Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

14668339 .. 14669634

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0177200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGTTATTGATTTGGAGAAGCTTGGAGTGTCGGATATCGGTCCTCCAGTAGTGGAAGCACTGTCAAGGACAAAATTCATAGGGCTTTCCGAGGGTTTTAACTTCCTAAATGGGTTGCCACATTCATCAACTTTTCAGATTGTTAATGTGATTGGTACCGGGGAGAACGTGATGGGGTATTGGACACCTGAAAATGAATTTGTGAGAAACTTGAATTCCAAAACCGCAATGAACAGCTCATTCTCTACTTCCAATAGTAGTCTTGGGTATATTATATGGCCCGGAGACTCCACCTCTACTCCAAAAGGTTGGCAGATTCCTACAAGTGGGATGAAGTTGAAGATTTTACTACCAGTTCAGAGTGGGTTCAAGGAATTTACGAACGTGGCGGATGATTCTAACCTTGAGCAGCAGATTATGATGAAAGAGGAATTTTGCAATGAACAGTTGGCTCTGGTCTATCGATTTTGTAGGTCAGGTCATTTTGATAAGGCAAAAGAGGTGTTGGTGCAAATATTGGAGAGGTGGAAATCAAAAGTTATGGCTAAAATTGCAGGGGAGGAGAATACTAAGAAACCAAATTTTGTTCTTAAGGAATGCCTCAAGCTCGACAATAAGATGGCAGTCTACTCCATTGACACCCAATCTCGATCGCATCTATTGTCGTGGTTCATTCTTTTCTTTGAACTGGGTAATTGTGAGACATCGAAGGAAACACCACCCTATTGCAGAAAAGCATCGGCCGAAATTAGTCTAGTGACCCAAAGCTTAGTCTCTCAGGTATTCACTGCCATCATTTCCAGTCCCCAATACTTTCGAGCATCTTTTTATGGGGTATTGTATGACTTGATTAAGCTCTATGTTGTGATTTATATTGCTTTCATCGATAATGCTGGAAATTTGCTCCCTGATGACTCTTTTGGGATAATGATAAGAAATGGCAAGTTATTTTATGAATATATGAATGTGCTTGCCAAAATGATTTTAAGGAGTGTTAGTAAGGAGCGGCTGATGAGTTCAAATGTTAGTATAATGGATACAATTGTTGCTGCATTATGTGGAGAGAGCATCACGATGGATGGCGTTGGAAACTGCAAGAAAGAAGCTGCAAGTATATTACATATCTGGGCATATCATATTAATGATCAAATGGTGGACTGGGATGTTGTACATGCCTTGATGTATGAAGAGGGATTCATTAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

402

Amino Acids

45.3

Weight (kDa)

5.65

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	3 cut(s)	225, 389, 1006
AcoI	YGGCCR	1 cut(s)	741
AcsI	RAATTY	7 cut(s)	74, 197, 214, 374, 431, 580, 898
AfaI	GTAC	2 cut(s)	157, 1170
AfiI	CCNNNNNNNGG	1 cut(s)	326
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	5 cut(s)	214, 340, 370, 686, 1020
AluBI	AGCT	6 cut(s)	22, 237, 607, 768, 856, 1106
AluI	AGCT	6 cut(s)	22, 237, 607, 768, 856, 1106
Alw26I	GTCTC	3 cut(s)	279, 695, 778
AoxI	GGCC	2 cut(s)	278, 741
ApeKI	GCWGC	3 cut(s)	409, 1049, 1106
ApoI	RAATTY	7 cut(s)	74, 197, 214, 374, 431, 580, 898
AseI	ATTAAT	2 cut(s)	1140, 1200
Asp718I	GGTACC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	41, 279
AsuC2I	CCSGG	2 cut(s)	160, 282
AvaII	GGWCC	1 cut(s)	41
BaeI	ACNNNNGTAYC	2 cut(s)	1029, 1062
BanI	GGYRCC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	421, 1036, 1093
BccI	CCATC	5 cut(s)	166, 613, 800, 1069, 1073
BciVI	GTATCC	1 cut(s)	1030
BclI	TGATCA	1 cut(s)	1144
BcnI	CCSGG	2 cut(s)	160, 282
BcoDI	GTCTC	3 cut(s)	279, 695, 778
BfaI	CTAG	1 cut(s)	755
BfrI	CTTAAG	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	1030
BisI	GCNGC	4 cut(s)	410, 1007, 1050, 1107
BlsI	GCNGC	4 cut(s)	411, 1008, 1051, 1108
Bme1390I	CCNGG	2 cut(s)	160, 282
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 279
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	160, 282
BmrI	ACTGGG	2 cut(s)	698, 1168
BmsI	GCATC	4 cut(s)	664, 746, 830, 1077
BmuI	ACTGGG	2 cut(s)	698, 1168
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	425, 587
BpuMI	CCSGG	2 cut(s)	160, 282
Bsa29I	ATCGAT	2 cut(s)	463, 885
BsaJI	CCNNGG	2 cut(s)	90, 159
BsaXI	ACNNNNNCTCC	4 cut(s)	283, 313, 982, 1012
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	5 cut(s)	47, 353, 693, 801, 1163
Bse3DI	GCAATG	2 cut(s)	234, 445
BseCI	ATCGAT	2 cut(s)	463, 885
BseDI	CCNNGG	2 cut(s)	90, 159
BseGI	GGATG	4 cut(s)	336, 397, 1084, 1168
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	2 cut(s)	234, 445
BseMII	CTCAG	1 cut(s)	791
BseNI	ACTGG	5 cut(s)	47, 353, 693, 801, 1163
BseRI	GAGGAG	1 cut(s)	575
BseX3I	CGGCCG	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	421, 1036, 1093
Bsh1285I	CGRYCG	2 cut(s)	653, 744
BshFI	GGCC	2 cut(s)	280, 743
BshNI	GGYRCC	1 cut(s)	155
BshVI	ATCGAT	2 cut(s)	463, 885
BsiEI	CGRYCG	2 cut(s)	653, 744
BsiSI	CCGG	2 cut(s)	159, 282
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	3 cut(s)	279, 695, 778
BsmFI	GGGAC	1 cut(s)	789
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	280, 743
Bsp1407I	TGTACA	1 cut(s)	1168
Bsp143I	GATC	2 cut(s)	650, 1144
BspACI	CCGC	3 cut(s)	225, 389, 1006
BspANI	GGCC	2 cut(s)	280, 743
BspCNI	CTCAG	1 cut(s)	790
BspDI	ATCGAT	2 cut(s)	463, 885
BspLI	GGNNCC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	155
BspTI	CTTAAG	1 cut(s)	590
BsrBI	CCGCTC	1 cut(s)	1006
BsrDI	GCAATG	2 cut(s)	234, 445
BsrGI	TGTACA	1 cut(s)	1168
BsrI	ACTGG	5 cut(s)	47, 353, 693, 801, 1163
BssECI	CCNNGG	2 cut(s)	90, 159
BssMI	GATC	2 cut(s)	650, 1144
Bst4CI	ACNGT	2 cut(s)	63, 447
Bst6I	CTCTTC	1 cut(s)	1182
BstAFI	CTTAAG	1 cut(s)	590
BstAUI	TGTACA	1 cut(s)	1168
BstC8I	GCNNGC	1 cut(s)	972
BstDEI	CTNAG	3 cut(s)	570, 769, 777
BstF5I	GGATG	4 cut(s)	336, 397, 1084, 1168
BstKTI	GATC	2 cut(s)	653, 1147
BstMAI	GTCTC	3 cut(s)	279, 695, 778
BstMBI	GATC	2 cut(s)	650, 1144
BstMCI	CGRYCG	2 cut(s)	653, 744
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNSI	RCATGY	1 cut(s)	1175
BstSCI	CCNGG	2 cut(s)	158, 280
BstV1I	GCAGC	3 cut(s)	421, 1036, 1093
BstXI	CCANNNNNNTGG	1 cut(s)	309
BstZI	CGGCCG	1 cut(s)	741
Bsu15I	ATCGAT	2 cut(s)	463, 885
BsuI	GTATCC	1 cut(s)	1030
BsuRI	GGCC	2 cut(s)	280, 743
BsuTUI	ATCGAT	2 cut(s)	463, 885
BtsCI	GGATG	4 cut(s)	336, 397, 1084, 1168
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	2 cut(s)	59, 786
Cac8I	GCNNGC	1 cut(s)	972
Cfr13I	GGNCC	2 cut(s)	41, 279
ClaI	ATCGAT	2 cut(s)	463, 885
Csp6I	GTAC	2 cut(s)	156, 1169
CviAII	CATG	1 cut(s)	1172
CviQI	GTAC	2 cut(s)	156, 1169
DdeI	CTNAG	3 cut(s)	570, 769, 777
DpnI	GATC	2 cut(s)	652, 1146
DpnII	GATC	2 cut(s)	650, 1144
EaeI	YGGCCR	1 cut(s)	741
EagI	CGGCCG	1 cut(s)	741
Eam1104I	CTCTTC	1 cut(s)	1182
EarI	CTCTTC	1 cut(s)	1182
EciI	GGCGGA	1 cut(s)	404
EclXI	CGGCCG	1 cut(s)	741
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	741
EcoRI	GAATTC	1 cut(s)	214
EcoRV	GATATC	1 cut(s)	37
FaeI	CATG	1 cut(s)	1175
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	1 cut(s)	1171
FbaI	TGATCA	1 cut(s)	1144
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	4 cut(s)	410, 1007, 1050, 1107
FokI	GGATG	4 cut(s)	343, 404, 1091, 1175
Fsp4HI	GCNGC	4 cut(s)	410, 1007, 1050, 1107
FspBI	CTAG	1 cut(s)	755
GluI	GCNGC	4 cut(s)	410, 1007, 1050, 1107
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	280, 743
HapII	CCGG	2 cut(s)	159, 282
Hin1II	CATG	1 cut(s)	1175
HindIII	AAGCTT	2 cut(s)	20, 766
HinfI	GANTC	5 cut(s)	287, 316, 395, 914, 1194
HpaII	CCGG	2 cut(s)	159, 282
Hpy166II	GTNNAC	2 cut(s)	628, 1156
Hpy188I	TCNGA	4 cut(s)	34, 91, 138, 360
Hpy188III	TCNNGA	2 cut(s)	648, 1072
Hpy8I	GTNNAC	2 cut(s)	628, 1156
HpyAV	CCTTC	1 cut(s)	703
HpyCH4III	ACNGT	2 cut(s)	63, 447
HpyCH4IV	ACGT	2 cut(s)	168, 384
HpyCH4V	TGCA	7 cut(s)	438, 511, 554, 729, 1052, 1095, 1109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	3 cut(s)	570, 769, 777
HpySE526I	ACGT	2 cut(s)	168, 384
Hsp92II	CATG	1 cut(s)	1175
KpnI	GGTACC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	1144
Kzo9I	GATC	2 cut(s)	650, 1144
LmnI	GCTCC	2 cut(s)	909, 1003
Lsp1109I	GCAGC	3 cut(s)	421, 1036, 1093
LweI	GCATC	4 cut(s)	664, 746, 830, 1077
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	2 cut(s)	168, 384
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	2 cut(s)	652, 1146
MbiI	CCGCTC	1 cut(s)	1006
MboI	GATC	2 cut(s)	650, 1144
MboII	GAAGA	2 cut(s)	352, 1199
MfeI	CAATTG	1 cut(s)	1041
MlyI	GAGTC	2 cut(s)	281, 908
MmeI	TCCRAC	2 cut(s)	12, 1066
MnlI	CCTC	9 cut(s)	54, 85, 304, 421, 493, 516, 553, 611, 1183
MseI	TTAA	7 cut(s)	99, 144, 591, 852, 986, 1140, 1200
MslI	CAYNNNNRTG	2 cut(s)	1073, 1140
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	2 cut(s)	159, 282
MspR9I	CCNGG	2 cut(s)	160, 282
MunI	CAATTG	1 cut(s)	1041
Mva1269I	GAATGC	1 cut(s)	602
MwoI	GCNNNNNNNGC	1 cut(s)	551
NciI	CCSGG	2 cut(s)	160, 282
NdeII	GATC	2 cut(s)	650, 1144
NlaIII	CATG	1 cut(s)	1175
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	757
NspI	RCATGY	1 cut(s)	1175
PctI	GAATGC	1 cut(s)	602
PfeI	GAWTC	3 cut(s)	316, 395, 1194
PkrI	GCNGC	4 cut(s)	411, 1008, 1051, 1108
Ple19I	CGATCG	1 cut(s)	653
PleI	GAGTC	2 cut(s)	281, 908
PpsI	GAGTC	2 cut(s)	281, 908
PshBI	ATTAAT	2 cut(s)	1140, 1200
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	2 cut(s)	41, 279
PvuI	CGATCG	1 cut(s)	653
RsaI	GTAC	2 cut(s)	157, 1170
RsaNI	GTAC	2 cut(s)	156, 1169
RseI	CAYNNNNRTG	2 cut(s)	1073, 1140
SaqAI	TTAA	7 cut(s)	99, 144, 591, 852, 986, 1140, 1200
SatI	GCNGC	4 cut(s)	410, 1007, 1050, 1107
Sau3AI	GATC	2 cut(s)	650, 1144
Sau96I	GGNCC	2 cut(s)	41, 279
SchI	GAGTC	2 cut(s)	281, 908
ScrFI	CCNGG	2 cut(s)	160, 282
SfaNI	GCATC	4 cut(s)	664, 746, 830, 1077
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	1073, 1140
SmlI	CTYRAG	3 cut(s)	404, 590, 602
SmoI	CTYRAG	3 cut(s)	404, 590, 602
SsiI	CCGC	3 cut(s)	225, 389, 1006
SspI	AATATT	1 cut(s)	516
SspMI	CTAG	1 cut(s)	755
StyD4I	CCNGG	2 cut(s)	158, 280
TaaI	ACNGT	2 cut(s)	63, 447
TaiI	ACGT	2 cut(s)	171, 387
TaqI	TCGA	6 cut(s)	463, 609, 649, 707, 817, 885
TaqII	GACCGA	1 cut(s)	29
TatI	WGTACW	1 cut(s)	1168
TauI	GCSGC	1 cut(s)	1009
TfiI	GAWTC	3 cut(s)	316, 395, 1194
Tru1I	TTAA	7 cut(s)	99, 144, 591, 852, 986, 1140, 1200
Tru9I	TTAA	7 cut(s)	99, 144, 591, 852, 986, 1140, 1200
TscAI	CASTG	2 cut(s)	66, 793
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	3 cut(s)	409, 1049, 1106
Tsp45I	GTSAC	1 cut(s)	757
TspRI	CASTG	2 cut(s)	66, 793
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	41
VspI	ATTAAT	2 cut(s)	1140, 1200
XapI	RAATTY	7 cut(s)	74, 197, 214, 374, 431, 580, 898
XceI	RCATGY	1 cut(s)	1175
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.