Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

37334151 .. 37335548

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG335500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGTGTCAATGATATTGTCACTTCTGGAGCCAAGCCATTATTTTTCCTTGATTGCTTTGCTACAAGCCGCCTTGATGTTGATCTTGCTGAAAAGGTTATCAAGGGAATTGTCGATGGTTGCCAACAATCAGACTGTCCTCTTTTAGGTGGAGAGACTGCCGAGATGCGGGTTTCTATGCAGAGGGACTCAGTGATTGATGGTAAAAACATTGTGGCTGGAGATGTCCTCATTGGCCTACCATCCAGTGGGGTTCATTCCAATGGTTTTTCTCTTGTAAGAAGGGTTCTAGCTCATAGTGGGTTGTCTCTGAAGGACCAACTACCGGGTAAATCTGTTACCTTAGGTGAAGCTTTGATGGCCCCCACAGTGATATATGTTAAGCAGGTGCTTGACATAGTTAGCAAGGAAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTTTCACTGACAATATACCTAGAGTATTTCCAAAAGGCGTAGGAGCTGTCATCTATAATGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGACAAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACAGAATACTTGAAGATGGAAATGGAGCTTATTGCATTGGTGAGGTTGTAACTGGTGAAGGAGTGAGTTATAGACAAAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

238

Amino Acids

25.37

Weight (kDa)

5.26

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	1 - 58	5.8e-14	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	73 - 232	7.4e-35	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	248
AciI	CCGC	2 cut(s)	70, 169
AclWI	GGATC	2 cut(s)	532, 545
AcuI	CTGAAG	1 cut(s)	332
AfiI	CCNNNNNNNGG	4 cut(s)	146, 168, 248, 325
AgsI	TTSAA	2 cut(s)	532, 644
AluBI	AGCT	5 cut(s)	293, 353, 491, 524, 659
AluI	AGCT	5 cut(s)	293, 353, 491, 524, 659
Alw26I	GTCTC	3 cut(s)	149, 312, 568
AlwI	GGATC	2 cut(s)	532, 545
AoxI	GGCC	2 cut(s)	235, 360
AspS9I	GGNCC	2 cut(s)	316, 361
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	3 cut(s)	359, 683, 698
AvaII	GGWCC	1 cut(s)	316
AxyI	CCTNAGG	1 cut(s)	343
BamHI	GGATCC	1 cut(s)	537
BccI	CCATC	6 cut(s)	110, 194, 250, 352, 595, 641
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	149, 312, 568
BfaI	CTAG	2 cut(s)	290, 465
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	316, 361
BmiI	GGNNCC	3 cut(s)	31, 363, 539
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	3 cut(s)	156, 553, 635
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpmI	CTGGAG	2 cut(s)	48, 240
BpuMI	CCSGG	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 168, 248, 325
Bse1I	ACTGG	2 cut(s)	246, 688
Bse21I	CCTNAGG	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	81
BseGI	GGATG	3 cut(s)	242, 606, 626
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	4 cut(s)	146, 168, 248, 325
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	246, 688
BseYI	CCCAGC	1 cut(s)	520
BshFI	GGCC	2 cut(s)	237, 362
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	2 cut(s)	200, 503
BslI	CCNNNNNNNGG	4 cut(s)	146, 168, 248, 325
BsmAI	GTCTC	3 cut(s)	149, 312, 568
BsmFI	GGGAC	2 cut(s)	200, 503
BsnI	GGCC	2 cut(s)	237, 362
Bsp143I	GATC	2 cut(s)	82, 537
BspACI	CCGC	2 cut(s)	70, 169
BspANI	GGCC	2 cut(s)	237, 362
BspCNI	CTCAG	1 cut(s)	203
BspLI	GGNNCC	3 cut(s)	31, 363, 539
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	532, 545
BsrI	ACTGG	2 cut(s)	246, 688
BssMI	GATC	2 cut(s)	82, 537
Bst4CI	ACNGT	2 cut(s)	137, 370
Bst6I	CTCTTC	1 cut(s)	547
BstDEI	CTNAG	2 cut(s)	190, 343
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	242, 606, 626
BstKTI	GATC	2 cut(s)	85, 540
BstMAI	GTCTC	3 cut(s)	149, 312, 568
BstMBI	GATC	2 cut(s)	82, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	537
Bsu36I	CCTNAGG	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	237, 362
BtsCI	GGATG	3 cut(s)	242, 606, 626
BtsIMutI	CAGTG	4 cut(s)	198, 253, 375, 450
BveI	ACCTGC	1 cut(s)	376
Cfr13I	GGNCC	2 cut(s)	316, 361
CviAII	CATG	1 cut(s)	510
DdeI	CTNAG	2 cut(s)	190, 343
DpnI	GATC	2 cut(s)	84, 539
DpnII	GATC	2 cut(s)	82, 537
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	513
FaqI	GGGAC	2 cut(s)	200, 503
FatI	CATG	1 cut(s)	509
FauI	CCCGC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	3 cut(s)	229, 613, 613
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	2 cut(s)	290, 465
GluI	GCNGC	1 cut(s)	70
GsaI	CCCAGC	1 cut(s)	524
GsuI	CTGGAG	2 cut(s)	48, 240
HaeIII	GGCC	2 cut(s)	237, 362
HapII	CCGG	1 cut(s)	326
Hin1II	CATG	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	2 cut(s)	188, 506
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	3 cut(s)	359, 683, 698
Hpy188I	TCNGA	2 cut(s)	133, 312
Hpy188III	TCNNGA	1 cut(s)	27
HpyAV	CCTTC	5 cut(s)	276, 307, 404, 412, 683
HpyCH4III	ACNGT	2 cut(s)	137, 370
HpyCH4V	TGCA	2 cut(s)	181, 666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	190, 343
Hsp92II	CATG	1 cut(s)	513
Kzo9I	GATC	2 cut(s)	82, 537
LmnI	GCTCC	3 cut(s)	29, 488, 656
LpnPI	CCDG	9 cut(s)	12, 204, 259, 339, 371, 423, 534, 534, 669
LweI	GCATC	3 cut(s)	156, 553, 635
MaeI	CTAG	2 cut(s)	290, 465
MaeIII	GTNAC	3 cut(s)	19, 337, 679
MalI	GATC	2 cut(s)	84, 539
MboI	GATC	2 cut(s)	82, 537
MboII	GAAGA	3 cut(s)	564, 572, 656
MflI	RGATCY	1 cut(s)	537
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	7 cut(s)	150, 177, 239, 434, 538, 616, 667
MseI	TTAA	2 cut(s)	381, 585
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	82, 537
NlaIII	CATG	1 cut(s)	513
NlaIV	GGNNCC	3 cut(s)	31, 363, 539
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	19
PaqCI	CACCTGC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	71
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	520
PspN4I	GGNNCC	3 cut(s)	31, 363, 539
PspPI	GGNCC	2 cut(s)	316, 361
PsrI	GAACNNNNNNTAC	2 cut(s)	270, 302
PsuI	RGATCY	1 cut(s)	537
PvuII	CAGCTG	1 cut(s)	524
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	381, 585
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	2 cut(s)	82, 537
Sau96I	GGNCC	2 cut(s)	316, 361
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	327
SfaNI	GCATC	3 cut(s)	156, 553, 635
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	70, 169
SspMI	CTAG	2 cut(s)	290, 465
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	137, 370
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	108
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	381, 585
Tru9I	TTAA	2 cut(s)	381, 585
TscAI	CASTG	4 cut(s)	198, 253, 375, 457
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	245, 498
TspRI	CASTG	4 cut(s)	198, 253, 375, 457
Van91I	CCANNNNNTGG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	316
XagI	CCTNNNNNAGG	1 cut(s)	144
XspI	CTAG	2 cut(s)	290, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.