Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

30857633 .. 30859631

Gene Structure 1999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG276100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCCACCGGCCTCAAAGCAAACACAGAGCTTGCTCTTGGCTTTGCCTCTTCTTCAAGACCCTCTTATTGGAAACCCAACTCCACCCATACCCAGCTATCCAGTTTGCCGTCGGGGTCTCTCTCCAACAACTTCTCCGGCCTCTCTATGGCTTCGTCAAGTGGAGTTTCCCAGAGCAAACGCGTATGCTCACTTTCGAAGGATGGTTCCGGTGAAAGCTCTGATCAAAATGATGGTCTGACGTATAAGGGTGCTGGTGTTGATATAGACGCCGGCTCGGAACTTGTTCGACGAATTGCCAAGATGGCTCCTGGGATTGGAGGCTTTGGAGGTCTTTTCCCTCTCGGTGATTCATATCTTGTTGCTGGTACTGATGGTGTGGGAACTAAACTTAAGCTTGCATTTGATACTGGAATTCATGAGACCATTGGTATTGATTTGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTTTCACTGACAATATACCTAGAGTATTTCCTAAAGGCCTAGGAGCAGTCATCTATAAAGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGAAGAACTTTCAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACAGAATACTTGAAGATGGAAATGGAGCTTACTGCATTGGCGAGGTTATAACTGGTGAAGGAGTGCGTTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

253

Amino Acids

26.47

Weight (kDa)

6.43

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	147 - 250	3.4e-19	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AccII	CGCG	1 cut(s)	183
AclWI	GGATC	2 cut(s)	586, 599
AcsI	RAATTY	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	69, 148, 317
AflII	CTTAAG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	4 cut(s)	57, 586, 640, 698
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	6 cut(s)	31, 97, 219, 397, 578, 713
AluI	AGCT	6 cut(s)	31, 97, 219, 397, 578, 713
Alw26I	GTCTC	2 cut(s)	123, 416
AlwI	GGATC	2 cut(s)	586, 599
AoxI	GGCC	3 cut(s)	10, 139, 535
ApoI	RAATTY	1 cut(s)	414
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	285
AspA2I	CCTAGG	1 cut(s)	538
AsuHPI	GGTGA	3 cut(s)	224, 359, 752
AsuII	TTCGAA	1 cut(s)	197
AvrII	CCTAGG	1 cut(s)	538
BamHI	GGATCC	1 cut(s)	591
BccI	CCATC	6 cut(s)	197, 227, 298, 368, 649, 695
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	123, 416
BfaI	CTAG	2 cut(s)	519, 539
BfrI	CTTAAG	1 cut(s)	392
BglI	GCCNNNNNGGC	1 cut(s)	305
BlnI	CCTAGG	1 cut(s)	538
Bme1390I	CCNGG	1 cut(s)	312
BmiI	GGNNCC	3 cut(s)	208, 309, 593
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	607, 689
Bpu14I	TTCGAA	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	2 cut(s)	123, 416
BsaJI	CCNNGG	2 cut(s)	311, 538
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 148, 317
Bse118I	RCCGGY	2 cut(s)	8, 272
Bse1I	ACTGG	3 cut(s)	102, 415, 742
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	311, 538
BseGI	GGATG	3 cut(s)	208, 660, 680
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	69, 148, 317
BseNI	ACTGG	3 cut(s)	102, 415, 742
BseYI	CCCAGC	2 cut(s)	93, 574
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	12, 141, 537
BsiSI	CCGG	4 cut(s)	9, 138, 210, 273
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	3 cut(s)	69, 148, 317
BsmAI	GTCTC	2 cut(s)	123, 416
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	3 cut(s)	12, 141, 537
Bso31I	GGTCTC	2 cut(s)	123, 416
Bsp119I	TTCGAA	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	223, 591
BspANI	GGCC	3 cut(s)	12, 141, 537
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	208, 309, 593
BspPI	GGATC	2 cut(s)	586, 599
BspT104I	TTCGAA	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	2 cut(s)	123, 416
BsrFI	RCCGGY	2 cut(s)	8, 272
BsrI	ACTGG	3 cut(s)	102, 415, 742
BssAI	RCCGGY	2 cut(s)	8, 272
BssECI	CCNNGG	2 cut(s)	311, 538
BssMI	GATC	2 cut(s)	223, 591
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	538
Bst2UI	CCWGG	1 cut(s)	312
Bst6I	CTCTTC	2 cut(s)	55, 601
BstACI	GRCGYC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	33, 274, 399
BstF5I	GGATG	3 cut(s)	208, 660, 680
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	2 cut(s)	226, 594
BstMAI	GTCTC	2 cut(s)	123, 416
BstMBI	GATC	2 cut(s)	223, 591
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstUI	CGCG	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	591
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	12, 141, 537
BtsCI	GGATG	3 cut(s)	208, 660, 680
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	3 cut(s)	33, 274, 399
CciI	TCATGA	1 cut(s)	418
Cfr10I	RCCGGY	2 cut(s)	8, 272
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	2 cut(s)	419, 564
CviQI	GTAC	1 cut(s)	369
DpnI	GATC	2 cut(s)	225, 593
DpnII	GATC	2 cut(s)	223, 591
Eam1104I	CTCTTC	2 cut(s)	55, 601
EarI	CTCTTC	2 cut(s)	55, 601
Eco130I	CCWWGG	1 cut(s)	538
Eco147I	AGGCCT	1 cut(s)	537
Eco31I	GGTCTC	2 cut(s)	123, 416
EcoRI	GAATTC	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	538
FaeI	CATG	2 cut(s)	422, 567
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	2 cut(s)	418, 563
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	3 cut(s)	215, 667, 667
FspBI	CTAG	2 cut(s)	519, 539
GsaI	CCCAGC	2 cut(s)	97, 578
HaeIII	GGCC	3 cut(s)	12, 141, 537
HapII	CCGG	4 cut(s)	9, 138, 210, 273
HgaI	GACGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	422, 567
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	350, 560
HpaII	CCGG	4 cut(s)	9, 138, 210, 273
HphI	GGTGA	3 cut(s)	224, 359, 752
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	223, 240, 280
Hpy188III	TCNNGA	2 cut(s)	57, 419
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	115, 294
HpyAV	CCTTC	3 cut(s)	193, 466, 737
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	401, 720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	422, 567
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	223, 591
LmnI	GCTCC	3 cut(s)	313, 542, 710
LweI	GCATC	2 cut(s)	607, 689
MaeI	CTAG	2 cut(s)	519, 539
MaeII	ACGT	1 cut(s)	242
MalI	GATC	2 cut(s)	225, 593
MboI	GATC	2 cut(s)	223, 591
MboII	GAAGA	6 cut(s)	42, 45, 618, 626, 642, 710
MflI	RGATCY	1 cut(s)	591
MluCI	AATT	3 cut(s)	294, 414, 453
MluI	ACGCGT	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	150
MroNI	GCCGGC	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	578
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	4 cut(s)	9, 138, 210, 273
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	305
NaeI	GCCGGC	1 cut(s)	274
NdeII	GATC	2 cut(s)	223, 591
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	422, 567
NlaIV	GGNNCC	3 cut(s)	208, 309, 593
NspV	TTCGAA	1 cut(s)	197
PagI	TCATGA	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	537
PdiI	GCCGGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	350, 560
PsiI	TTATAA	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	310
PspFI	CCCAGC	2 cut(s)	93, 574
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	208, 309, 593
PsuI	RGATCY	1 cut(s)	591
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	223, 591
ScrFI	CCNGG	1 cut(s)	312
SfaNI	GCATC	2 cut(s)	607, 689
SfuI	TTCGAA	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	294, 414, 453
SseBI	AGGCCT	1 cut(s)	537
SspMI	CTAG	2 cut(s)	519, 539
StuI	AGGCCT	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	538
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	197, 289
TasI	AATT	3 cut(s)	294, 414, 453
TfiI	GAWTC	2 cut(s)	350, 560
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	342, 407, 552
TspRI	CASTG	1 cut(s)	511
Vha464I	CTTAAG	1 cut(s)	392
XapI	RAATTY	1 cut(s)	414
XmaJI	CCTAGG	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	2 cut(s)	519, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.