Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

66859430 .. 66862322

Gene Structure 2893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG386700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCCACCGGCCTCAAAGAAAACACAGAGCTTGCTCTTGTCTTTGCCTCTTCTTCTAGACCCTCTATTAGAAACCACTCCACCCATACCCAGCTATCCAGATTGCCATCGGGGTCTCTCCCTAACAACTTCTCCGGCCTCTCTATGGCTTCATCGAGTGGAATTTGTCAGAGCAAACGCGTATGCTCACTTTCGAAGGATGATTCTGGTGAAAGCTCTAGTCAAAACAATGGTATGACATATAAGGACGCTGGTGTTGATATAGACGCCGGGTCGGAACTTGTTCGACTAATTGCCAAGATGGCTCCTAGGATTAGAGGCTTTGGAGGTCTTTTCCTTCTCGCTGCTGAAAATGCTTTGTGCTTTTGCTTGCTGAAACAGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGTCCACATCACAAGAGGTGGTTTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAAAGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

178

Amino Acids

19.01

Weight (kDa)

9.33

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	128 - 178	2.1e-07	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	526
AhdI	GACNNNNNGTC	1 cut(s)	271
AluBI	AGCT	5 cut(s)	31, 94, 216, 485, 518
AluI	AGCT	5 cut(s)	31, 94, 216, 485, 518
Alw26I	GTCTC	1 cut(s)	120
AoxI	GGCC	3 cut(s)	10, 136, 475
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	282
AspA2I	CCTAGG	2 cut(s)	308, 478
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	221, 436
AsuII	TTCGAA	1 cut(s)	194
AvrII	CCTAGG	2 cut(s)	308, 478
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	2 cut(s)	115, 295
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	5 cut(s)	57, 219, 309, 459, 479
BglI	GCCNNNNNGGC	1 cut(s)	302
BisI	GCNGC	1 cut(s)	345
BlnI	CCTAGG	2 cut(s)	308, 478
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	271
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	271
Bpu14I	TTCGAA	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	308, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	308, 478
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	331
BseYI	CCCAGC	2 cut(s)	90, 514
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	12, 138, 477
BsiSI	CCGG	3 cut(s)	9, 135, 270
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	3 cut(s)	12, 138, 477
Bso31I	GGTCTC	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	531
BspANI	GGCC	3 cut(s)	12, 138, 477
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	308, 478
BssMI	GATC	1 cut(s)	531
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	308, 478
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	33, 371
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	531
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 353
BstSCI	CCNGG	1 cut(s)	269
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	12, 138, 477
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	33, 371
Cfr10I	RCCGGY	1 cut(s)	8
CseI	GACGC	2 cut(s)	257, 275
CviAII	CATG	1 cut(s)	504
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	55
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	308, 478
Eco147I	AGGCCT	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	308, 478
ErhI	CCWWGG	2 cut(s)	308, 478
FaeI	CATG	1 cut(s)	507
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	1 cut(s)	503
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	5 cut(s)	57, 219, 309, 459, 479
GluI	GCNGC	1 cut(s)	345
GsaI	CCCAGC	2 cut(s)	94, 518
HaeIII	GGCC	3 cut(s)	12, 138, 477
HapII	CCGG	3 cut(s)	9, 135, 270
HgaI	GACGC	2 cut(s)	257, 275
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	507
HinfI	GANTC	2 cut(s)	203, 500
HpaII	CCGG	3 cut(s)	9, 135, 270
HphI	GGTGA	2 cut(s)	221, 436
Hpy166II	GTNNAC	2 cut(s)	6, 424
Hpy188I	TCNGA	2 cut(s)	171, 277
Hpy188III	TCNNGA	2 cut(s)	57, 99
Hpy8I	GTNNAC	2 cut(s)	6, 424
HpyAV	CCTTC	3 cut(s)	190, 347, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 353
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	507
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	2 cut(s)	310, 482
LpnPI	CCDG	9 cut(s)	22, 104, 112, 148, 192, 237, 283, 365, 528
Lsp1109I	GCAGC	1 cut(s)	331
MaeI	CTAG	5 cut(s)	57, 219, 309, 459, 479
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	2 cut(s)	42, 45
MflI	RGATCY	1 cut(s)	531
MluCI	AATT	3 cut(s)	162, 291, 393
MluI	ACGCGT	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	8 cut(s)	23, 58, 73, 149, 311, 320, 398, 428
MroXI	GAANNNNTTC	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	3 cut(s)	9, 135, 270
MspR9I	CCNGG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	302, 353
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	1 cut(s)	531
NlaIII	CATG	1 cut(s)	507
NlaIV	GGNNCC	1 cut(s)	306
NspV	TTCGAA	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	203, 500
PkrI	GCNGC	1 cut(s)	346
PspFI	CCCAGC	2 cut(s)	90, 514
PspN4I	GGNNCC	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	531
PvuII	CAGCTG	1 cut(s)	518
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	1 cut(s)	531
ScrFI	CCNGG	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	194
Sse9I	AATT	3 cut(s)	162, 291, 393
SseBI	AGGCCT	1 cut(s)	477
SspMI	CTAG	5 cut(s)	57, 219, 309, 459, 479
StuI	AGGCCT	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	2 cut(s)	308, 478
TaqI	TCGA	3 cut(s)	155, 194, 286
TasI	AATT	3 cut(s)	162, 291, 393
TfiI	GAWTC	2 cut(s)	203, 500
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	141, 492
XapI	RAATTY	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	56
XmaJI	CCTAGG	2 cut(s)	308, 478
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	5 cut(s)	57, 219, 309, 459, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.