Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

38265457 .. 38280288

Gene Structure 14832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG282400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAATTGTTATCAACTTTGGGTTGTAGCTCATAGTGGGTTGTCTCTGAAGGACCAATTACCGGGCATATCTGTTACCTTAGGTGAAGCTCTGATGGCCACCACAGTGATATATGTTAAGCGGGTGCTTGACATAATTAGCAATGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGATTTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAATCATTCATGGGAAGTCCAAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGACGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

123

Amino Acids

13.46

Weight (kDa)

6.9

Isoelectric Point (pI)

23.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	17 - 121	3.4e-19	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	2 cut(s)	268, 281
AcoI	YGGCCR	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	268
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	4 cut(s)	29, 89, 227, 260
AluI	AGCT	4 cut(s)	29, 89, 227, 260
Alw26I	GTCTC	2 cut(s)	48, 304
AlwI	GGATC	2 cut(s)	268, 281
AoxI	GGCC	2 cut(s)	96, 217
AspA2I	CCTAGG	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	3 cut(s)	95, 178, 191
AvaII	GGWCC	1 cut(s)	52
AvrII	CCTAGG	1 cut(s)	220
AxyI	CCTNAGG	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	273
BccI	CCATC	2 cut(s)	88, 331
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	48, 304
BfaI	CTAG	2 cut(s)	201, 221
BlnI	CCTAGG	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse21I	CCTNAGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	342, 362
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	98, 219
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	48, 304
BsmBI	CGTCTC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	98, 219
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	98, 219
BspLI	GGNNCC	1 cut(s)	275
BspPI	GGATC	2 cut(s)	268, 281
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	342, 362
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	2 cut(s)	48, 304
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	273
Bsu36I	CCTNAGG	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	98, 219
BtsCI	GGATG	2 cut(s)	342, 362
BtsIMutI	CAGTG	2 cut(s)	111, 367
Cfr13I	GGNCC	1 cut(s)	52
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	8 cut(s)	29, 89, 98, 164, 219, 227, 260, 284
CviKI_1	RGCY	8 cut(s)	29, 89, 98, 164, 219, 227, 260, 284
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	68
Eco81I	CCTNAGG	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	1 cut(s)	249
FaiI	YATR	9 cut(s)	33, 68, 112, 114, 134, 197, 237, 247, 326
FatI	CATG	1 cut(s)	245
FauI	CCCGC	1 cut(s)	114
FokI	GGATG	2 cut(s)	349, 349
FspBI	CTAG	2 cut(s)	201, 221
HaeIII	GGCC	2 cut(s)	98, 219
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	1 cut(s)	249
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	3 cut(s)	95, 178, 191
Hpy188I	TCNGA	2 cut(s)	48, 93
HpyAV	CCTTC	2 cut(s)	43, 148
HpyCH4III	ACNGT	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	3 cut(s)	75, 159, 270
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	201, 221
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	2 cut(s)	300, 308
MflI	RGATCY	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	3 cut(s)	4, 56, 135
MluNI	TGGCCA	1 cut(s)	98
MnlI	CCTC	4 cut(s)	140, 170, 274, 352
Mox20I	TGGCCA	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	2 cut(s)	117, 321
MslI	CAYNNNNRTG	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	98
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	95
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	1 cut(s)	275
OliI	CACNNNNGTG	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	117, 321
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	9 cut(s)	31, 80, 85, 91, 151, 181, 202, 229, 262
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	4, 56, 135
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	2 cut(s)	201, 221
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	106
TasI	AATT	3 cut(s)	4, 56, 135
Tru1I	TTAA	2 cut(s)	117, 321
Tru9I	TTAA	2 cut(s)	117, 321
TscAI	CASTG	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	17, 234
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	52
XmaJI	CCTAGG	1 cut(s)	220
XspI	CTAG	2 cut(s)	201, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.