Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

25050748 .. 25054570

Gene Structure 3823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G020970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTTATCAAGGGAATTATGGATGGTTGCCAACAATCTGACTGTGCTCTTTTAGACTGCCGATATGCCGGTTTCTATGCAGAGGGTGAGTATGACCTCAATGGTTTTGCGGTTGGAATTGTGAAGAAGGAATCAGTGATTGATGGGAAAAATATTTTGGCTGGAGATGTCCTCATTGGCCTACCCTCTAGTGGGGTTCATTCCAATGGTTTTCTCTTCAGACGAGATTCCTCGTCGAGTGGGTCGAAGCTTCGTGCTGAGAAGCGGGGTTCAGGAGGGCCGATTCCGGAGGTTCGAGTTCGTATCGGTTCGTCGTCTGGTCATCTAGCTTGGACGCCGGAAGGCTTTCTGATCAGGACTCTTGCCAGGCGAGTCGTGGTCGAGGTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

130

Amino Acids

13.93

Weight (kDa)

8.91

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	2 cut(s)	110, 265
AcuI	CTGAAG	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	191, 192
AjnI	CCWGG	1 cut(s)	365
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	2 cut(s)	250, 329
AluI	AGCT	2 cut(s)	250, 329
Alw21I	GWGCWC	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	2 cut(s)	178, 278
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	49
BccI	CCATC	2 cut(s)	17, 137
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	1 cut(s)	351
BfaI	CTAG	2 cut(s)	189, 326
Bme1390I	CCNGG	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	367
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
BpmI	CTGGAG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 192
Bse118I	RCCGGY	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	367
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	191, 192
BseMII	CTCAG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	180, 280
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	3 cut(s)	69, 287, 338
BslI	CCNNNNNNNGG	2 cut(s)	191, 192
BsnI	GGCC	2 cut(s)	180, 280
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp13I	TCCGGA	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	351
BspACI	CCGC	2 cut(s)	110, 265
BspANI	GGCC	2 cut(s)	180, 280
BspCNI	CTCAG	1 cut(s)	250
BspEI	TCCGGA	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	1 cut(s)	351
BssNI	GRCGYC	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	351
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	180, 280
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	278
CseI	GACGC	1 cut(s)	343
CviJI	RGCY	6 cut(s)	161, 180, 250, 280, 329, 345
CviKI_1	RGCY	6 cut(s)	161, 180, 250, 280, 329, 345
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	365
FaiI	YATR	4 cut(s)	20, 66, 78, 93
FauI	CCCGC	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	351
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	2 cut(s)	189, 326
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	180, 280
HapII	CCGG	3 cut(s)	69, 287, 338
HgaI	GACGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	335
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	5 cut(s)	131, 227, 283, 358, 372
HpaII	CCGG	3 cut(s)	69, 287, 338
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	40, 221, 351
Hpy188III	TCNNGA	3 cut(s)	273, 287, 355
Hpy99I	CGWCG	2 cut(s)	238, 316
HpyAV	CCTTC	2 cut(s)	121, 335
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	351
LpnPI	CCDG	9 cut(s)	82, 147, 258, 300, 303, 340, 351, 352, 379
MaeI	CTAG	2 cut(s)	189, 326
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	2 cut(s)	136, 208
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	2 cut(s)	15, 117
MlyI	GAGTC	2 cut(s)	352, 381
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	8 cut(s)	76, 107, 182, 196, 241, 269, 283, 376
MroI	TCCGGA	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	3 cut(s)	69, 287, 338
MspR9I	CCNGG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	367
NdeII	GATC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	131, 227, 283
PleI	GAGTC	2 cut(s)	352, 380
PpsI	GAGTC	2 cut(s)	352, 380
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	352, 381
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	5 cut(s)	99, 252, 294, 331, 387
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	15, 117
SsiI	CCGC	2 cut(s)	110, 265
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	2 cut(s)	189, 326
StyD4I	CCNGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	4 cut(s)	236, 245, 295, 381
TasI	AATT	2 cut(s)	15, 117
TfiI	GAWTC	3 cut(s)	131, 227, 283
TscAI	CASTG	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	189, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.