Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006359.1

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

5449 .. 8617

Gene Structure 3169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006359.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgggttattcgatctgggaaatagcgaaggccatcatcgacgaccactccgagctcaccgctgacctctacacccaggccatcgtcaccggcggtggggctagcgatgaagaggcggcggcgactccggatccgaaagattgggcatggtggcctggccaccagtgcggcgttcctttcaaagatgtggtctgctttgttagaactggcggtggccttggtgttggatgtgttaatcgaggcgttggattatgggtaggttgtcaacgcagcatcatcgatcgtggacttgcaggagcaatggtggagggcggcgacttccgaatgatggtgttcaaatccaatgttatcaagggaattatggatggttgccaacaatctgactgtgctcttttagagggtgagtatgacctcaatggttttgcggttggaattgtgaagaaggaatcagtgattgatgggaaaaatattttggctggagatgtcctcattggcctaccatctagtggggttcattccaatggttttctcttggataagtcaaggacagctcaaagatgcaaacctggcaaggttacacacacgcatgtgtggtttccttatcagtttggttttgtcgtgaaacaatctttgaagccttgcaaaggtggaatggaagagctccctctgatggcctactcctgggcttggcttgtgtccctattgtggctctccacttctctcatgtcttgcatgtcgacagacatgctgtcgacatggatgccgagttcttcagacgacagttctttaaatcatgtttcatcagacggcagcgagatatacgacagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

276

Amino Acids

29.78

Weight (kDa)

4.99

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccI	GTMKAC	2 cut(s)	737, 752
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	8 cut(s)	60, 93, 116, 119, 168, 210, 312, 425
AclWI	GGATC	2 cut(s)	125, 138
AcoI	YGGCCR	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	756
AfiI	CCNNNNNNNGG	8 cut(s)	96, 328, 506, 644, 670, 681, 687, 705
AgsI	TTSAA	3 cut(s)	181, 337, 634
AhdI	GACNNNNNGTC	1 cut(s)	748
AjnI	CCWGG	4 cut(s)	75, 154, 565, 680
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AleI	CACNNNNGTG	1 cut(s)	587
AloI	GAACNNNNNNTCC	2 cut(s)	751, 783
AluBI	AGCT	3 cut(s)	55, 551, 661
AluI	AGCT	3 cut(s)	55, 551, 661
Alw21I	GWGCWC	3 cut(s)	57, 391, 663
AlwI	GGATC	2 cut(s)	125, 138
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	7 cut(s)	30, 78, 152, 157, 214, 493, 672
ApeKI	GCWGC	2 cut(s)	270, 810
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AsuHPI	GGTGA	3 cut(s)	49, 79, 413
AsuNHI	GCTAGC	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	57, 663
Bbv12I	GWGCWC	3 cut(s)	57, 391, 663
BbvI	GCAGC	2 cut(s)	282, 822
BccI	CCATC	7 cut(s)	41, 89, 322, 359, 452, 508, 664
BceAI	ACGGC	1 cut(s)	823
BcgI	CGANNNNNNTGC	6 cut(s)	259, 293, 727, 742, 761, 776
BciT130I	CCWGG	4 cut(s)	77, 156, 567, 682
BfaI	CTAG	2 cut(s)	102, 504
BisI	GCNGC	6 cut(s)	117, 120, 169, 271, 313, 811
BlsI	GCNGC	6 cut(s)	118, 121, 170, 272, 314, 812
Bme1390I	CCNGG	4 cut(s)	77, 156, 567, 682
BmeRI	GACNNNNNGTC	1 cut(s)	748
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	4 cut(s)	77, 156, 567, 682
BmsI	GCATC	3 cut(s)	282, 548, 750
BmtI	GCTAGC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
BpmI	CTGGAG	1 cut(s)	498
Bsa29I	ATCGAT	1 cut(s)	279
BsaJI	CCNNGG	3 cut(s)	75, 217, 681
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 288, 318
Bsc4I	CCNNNNNNNGG	8 cut(s)	96, 328, 506, 644, 670, 681, 687, 705
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	163, 211
Bse3DI	GCAATG	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	4 cut(s)	77, 156, 567, 682
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	3 cut(s)	75, 217, 681
BseGI	GGATG	3 cut(s)	233, 370, 765
BseLI	CCNNNNNNNGG	8 cut(s)	96, 328, 506, 644, 670, 681, 687, 705
BseMI	GCAATG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	163, 211
BseXI	GCAGC	2 cut(s)	282, 822
Bsh1285I	CGRYCG	1 cut(s)	283
BshFI	GGCC	7 cut(s)	32, 80, 154, 159, 216, 495, 674
BshVI	ATCGAT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	283
BsiHKAI	GWGCWC	3 cut(s)	57, 391, 663
BsiSI	CCGG	2 cut(s)	90, 128
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	8 cut(s)	96, 328, 506, 644, 670, 681, 687, 705
BsmFI	GGGAC	1 cut(s)	682
BsnI	GGCC	7 cut(s)	32, 80, 154, 159, 216, 495, 674
Bsp1286I	GDGCHC	3 cut(s)	57, 391, 663
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	12, 130, 280
BspACI	CCGC	8 cut(s)	60, 93, 116, 119, 168, 210, 312, 425
BspANI	GGCC	7 cut(s)	32, 80, 154, 159, 216, 495, 674
BspDI	ATCGAT	1 cut(s)	279
BspEI	TCCGGA	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	132
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	2 cut(s)	125, 138
BspQI	GCTCTTC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	163, 211
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	75, 217, 681
BssMI	GATC	3 cut(s)	12, 130, 280
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	4 cut(s)	77, 156, 567, 682
Bst4CI	ACNGT	3 cut(s)	386, 782, 827
Bst6I	CTCTTC	2 cut(s)	105, 651
BstC8I	GCNNGC	1 cut(s)	103
BstENI	CCTNNNNNAGG	1 cut(s)	642
BstF5I	GGATG	3 cut(s)	233, 370, 765
BstKTI	GATC	3 cut(s)	15, 133, 283
BstMBI	GATC	3 cut(s)	12, 130, 280
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 567
BstNI	CCWGG	4 cut(s)	77, 156, 567, 682
BstNSI	RCATGY	3 cut(s)	590, 736, 748
BstSCI	CCNGG	4 cut(s)	75, 154, 565, 680
BstV1I	GCAGC	2 cut(s)	282, 822
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	7 cut(s)	32, 80, 154, 159, 216, 495, 674
BsuTUI	ATCGAT	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	3 cut(s)	233, 370, 765
BtsIMutI	CAGTG	2 cut(s)	170, 456
Cac8I	GCNNGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	279
CviAII	CATG	7 cut(s)	147, 587, 724, 733, 745, 756, 794
DpnI	GATC	3 cut(s)	14, 132, 282
DpnII	GATC	3 cut(s)	12, 130, 280
DraI	TTTAAA	1 cut(s)	789
DriI	GACNNNNNGTC	1 cut(s)	748
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	105, 651
Eam1105I	GACNNNNNGTC	1 cut(s)	748
EarI	CTCTTC	2 cut(s)	105, 651
Ecl136II	GAGCTC	2 cut(s)	55, 661
Eco130I	CCWWGG	1 cut(s)	217
Eco24I	GRGCYC	2 cut(s)	57, 663
Eco53kI	GAGCTC	2 cut(s)	55, 661
Eco57I	CTGAAG	1 cut(s)	756
EcoICRI	GAGCTC	2 cut(s)	55, 661
EcoNI	CCTNNNNNAGG	1 cut(s)	642
EcoRII	CCWGG	4 cut(s)	75, 154, 565, 680
EcoT14I	CCWWGG	1 cut(s)	217
EcoT38I	GRGCYC	2 cut(s)	57, 663
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	7 cut(s)	150, 590, 727, 736, 748, 759, 797
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	7 cut(s)	146, 586, 723, 732, 744, 755, 793
FblI	GTMKAC	2 cut(s)	737, 752
Fnu4HI	GCNGC	6 cut(s)	117, 120, 169, 271, 313, 811
FokI	GGATG	3 cut(s)	240, 377, 772
FriOI	GRGCYC	2 cut(s)	57, 663
Fsp4HI	GCNGC	6 cut(s)	117, 120, 169, 271, 313, 811
FspBI	CTAG	2 cut(s)	102, 504
GluI	GCNGC	6 cut(s)	117, 120, 169, 271, 313, 811
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	7 cut(s)	32, 80, 154, 159, 216, 495, 674
HapII	CCGG	2 cut(s)	90, 128
Hin1II	CATG	7 cut(s)	150, 590, 727, 736, 748, 759, 797
HincII	GTYRAC	3 cut(s)	266, 738, 753
HindII	GTYRAC	3 cut(s)	266, 738, 753
HinfI	GANTC	2 cut(s)	124, 446
HpaII	CCGG	2 cut(s)	90, 128
HphI	GGTGA	3 cut(s)	49, 79, 413
Hpy166II	GTNNAC	4 cut(s)	266, 287, 738, 753
Hpy188I	TCNGA	7 cut(s)	52, 135, 323, 382, 669, 775, 805
Hpy188III	TCNNGA	2 cut(s)	128, 619
Hpy8I	GTNNAC	4 cut(s)	266, 287, 738, 753
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	22, 436
HpyCH4III	ACNGT	3 cut(s)	386, 782, 827
HpyCH4V	TGCA	4 cut(s)	293, 561, 642, 732
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 567
Hsp92II	CATG	7 cut(s)	150, 590, 727, 736, 748, 759, 797
Kpn2I	TCCGGA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	12, 130, 280
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	2 cut(s)	296, 666
Lsp1109I	GCAGC	2 cut(s)	282, 822
LweI	GCATC	3 cut(s)	282, 548, 750
MaeI	CTAG	2 cut(s)	102, 504
MaeIII	GTNAC	2 cut(s)	85, 574
MalI	GATC	3 cut(s)	14, 132, 282
MboI	GATC	3 cut(s)	12, 130, 280
MboII	GAAGA	4 cut(s)	122, 451, 668, 762
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	3 cut(s)	57, 391, 663
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	2 cut(s)	357, 432
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	3 cut(s)	205, 226, 409
MnlI	CCTC	8 cut(s)	77, 106, 233, 301, 391, 422, 497, 675
Mox20I	TGGCCA	1 cut(s)	159
MroI	TCCGGA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	2 cut(s)	234, 788
MslI	CAYNNNNRTG	3 cut(s)	519, 585, 587
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	2 cut(s)	90, 128
MspR9I	CCNGG	4 cut(s)	77, 156, 567, 682
MvaI	CCWGG	4 cut(s)	77, 156, 567, 682
MwoI	GCNNNNNNNGC	2 cut(s)	165, 567
NdeII	GATC	3 cut(s)	12, 130, 280
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	7 cut(s)	150, 590, 727, 736, 748, 759, 797
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	789
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	3 cut(s)	590, 736, 748
OliI	CACNNNNGTG	1 cut(s)	587
PciSI	GCTCTTC	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	6 cut(s)	118, 121, 170, 272, 314, 812
Ple19I	CGATCG	1 cut(s)	283
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp124BI	GAGCTC	2 cut(s)	57, 663
Psp6I	CCWGG	4 cut(s)	75, 154, 565, 680
PspGI	CCWGG	4 cut(s)	75, 154, 565, 680
PspN4I	GGNNCC	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	130
PvuI	CGATCG	1 cut(s)	283
RseI	CAYNNNNRTG	3 cut(s)	519, 585, 587
SacI	GAGCTC	2 cut(s)	57, 663
SalI	GTCGAC	2 cut(s)	736, 751
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	2 cut(s)	234, 788
SatI	GCNGC	6 cut(s)	117, 120, 169, 271, 313, 811
Sau3AI	GATC	3 cut(s)	12, 130, 280
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	4 cut(s)	77, 156, 567, 682
SduI	GDGCHC	3 cut(s)	57, 391, 663
SetI	ASST	9 cut(s)	57, 69, 262, 414, 553, 568, 576, 649, 663
SfaNI	GCATC	3 cut(s)	282, 548, 750
SgrAI	CRCCGGYG	1 cut(s)	89
SmiMI	CAYNNNNRTG	3 cut(s)	519, 585, 587
Sse9I	AATT	2 cut(s)	357, 432
SsiI	CCGC	8 cut(s)	60, 93, 116, 119, 168, 210, 312, 425
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	2 cut(s)	102, 504
SstI	GAGCTC	2 cut(s)	57, 663
StyD4I	CCNGG	4 cut(s)	75, 154, 565, 680
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	3 cut(s)	386, 782, 827
TaqI	TCGA	6 cut(s)	11, 39, 238, 279, 737, 752
TasI	AATT	2 cut(s)	357, 432
TauI	GCSGC	4 cut(s)	119, 122, 171, 315
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	2 cut(s)	234, 788
Tru9I	TTAA	2 cut(s)	234, 788
TscAI	CASTG	2 cut(s)	170, 456
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	270, 810
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	123, 503, 789
TspRI	CASTG	2 cut(s)	170, 456
Van91I	CCANNNNNTGG	1 cut(s)	506
XagI	CCTNNNNNAGG	1 cut(s)	642
XceI	RCATGY	3 cut(s)	590, 736, 748
XmiI	GTMKAC	2 cut(s)	737, 752
XspI	CTAG	2 cut(s)	102, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.