Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

31372685 .. 31374730

Gene Structure 2046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG277500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTTTGTTTTCAATTTATTAAGTCCAGGTACACTAGACATGTCCACCGGCCTCAAAGCAAACGCAGAGCTTGCTCTTGGCTTTGCCTCTTCTTCAAGACCCTCTTATTTGAAACCCAACTACACCCATACCCAGCTATCCAGATTGCCGTCCGGGTCTCTCCGCAATGACTTCTCCGGCCTCTCTATGGCTTCGTCAAGTGGAGTTTCCCAGAGCAAACGCGTATGCTCACTTTCGAAGAATGATTCCGGTGAAAGCTCTCATCAAAATGATGGTCTGACGTATAAGGGTGCTGGTGTTGATATAGACGCCGGCTCGGAACTTGTTCGACGAATTGCCAAGATGGCTCCTGGGATTGGAGGCTTTGGAGGTCTTTTCCCTCTCGGTGATTCATATCTCGTTGCTGGTACTGATGGTGTGGGAACTAAACTTAAGCTTGCATTTGATACTGGAATTCATGAGACCATTGGTATTGATTTGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTTTCACTGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCAGTCATCTATAAAGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGCCGGAAGAGTAGAAGATGCTGAAATGAGAAGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACAGAATACTTGAAGATGGAAATGGAGCTTACTGCATTGGCGAGGTTATAACTGGTGAAGGAGTGAGTTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

266

Amino Acids

28.03

Weight (kDa)

6.52

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	160 - 263	4.1e-19	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	773
AccII	CGCG	1 cut(s)	222
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	2 cut(s)	625, 638
AcsI	RAATTY	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	2 cut(s)	31, 409
AfiI	CCNNNNNNNGG	2 cut(s)	187, 356
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	2 cut(s)	39, 220
AgsI	TTSAA	5 cut(s)	13, 96, 112, 625, 737
AjnI	CCWGG	2 cut(s)	25, 349
AluBI	AGCT	6 cut(s)	70, 136, 258, 436, 617, 752
AluI	AGCT	6 cut(s)	70, 136, 258, 436, 617, 752
Alw26I	GTCTC	2 cut(s)	162, 455
AlwI	GGATC	2 cut(s)	625, 638
AoxI	GGCC	4 cut(s)	49, 178, 574, 639
ApoI	RAATTY	1 cut(s)	453
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
Asp700I	GAANNNNTTC	1 cut(s)	324
AspA2I	CCTAGG	1 cut(s)	577
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	3 cut(s)	263, 398, 791
AsuII	TTCGAA	1 cut(s)	236
AvrII	CCTAGG	1 cut(s)	577
BamHI	GGATCC	1 cut(s)	630
BccI	CCATC	5 cut(s)	266, 337, 407, 688, 734
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	27, 351
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	162, 455
BfaI	CTAG	3 cut(s)	35, 558, 578
BfrI	CTTAAG	1 cut(s)	431
BglI	GCCNNNNNGGC	1 cut(s)	344
BlnI	CCTAGG	1 cut(s)	577
Bme1390I	CCNGG	3 cut(s)	27, 154, 351
BmiI	GGNNCC	2 cut(s)	348, 632
BmrFI	CCNGG	3 cut(s)	27, 154, 351
BmsI	GCATC	2 cut(s)	646, 728
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	2 cut(s)	162, 455
BsaJI	CCNNGG	2 cut(s)	350, 577
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 356
Bse118I	RCCGGY	2 cut(s)	47, 311
Bse1I	ACTGG	2 cut(s)	454, 781
Bse3DI	GCAATG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	27, 351
BseDI	CCNNGG	2 cut(s)	350, 577
BseGI	GGATG	2 cut(s)	699, 719
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	187, 356
BseMI	GCAATG	1 cut(s)	172
BseNI	ACTGG	2 cut(s)	454, 781
BseYI	CCCAGC	2 cut(s)	132, 613
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	4 cut(s)	51, 180, 576, 641
BsiSI	CCGG	6 cut(s)	48, 153, 177, 249, 312, 642
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	187, 356
BsmAI	GTCTC	2 cut(s)	162, 455
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	4 cut(s)	51, 180, 576, 641
Bso31I	GGTCTC	2 cut(s)	162, 455
Bsp119I	TTCGAA	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	630
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	4 cut(s)	51, 180, 576, 641
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	348, 632
BspPI	GGATC	2 cut(s)	625, 638
BspT104I	TTCGAA	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	162, 455
BsrDI	GCAATG	1 cut(s)	172
BsrFI	RCCGGY	2 cut(s)	47, 311
BsrI	ACTGG	2 cut(s)	454, 781
BssAI	RCCGGY	2 cut(s)	47, 311
BssECI	CCNNGG	2 cut(s)	350, 577
BssMI	GATC	1 cut(s)	630
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	2 cut(s)	27, 351
Bst6I	CTCTTC	2 cut(s)	94, 640
BstACI	GRCGYC	1 cut(s)	309
BstAFI	CTTAAG	1 cut(s)	431
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	72, 313, 438
BstF5I	GGATG	2 cut(s)	699, 719
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	633
BstMAI	GTCTC	2 cut(s)	162, 455
BstMBI	GATC	1 cut(s)	630
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 344
BstNI	CCWGG	2 cut(s)	27, 351
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	25, 152, 349
BstUI	CGCG	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	630
BstYI	RGATCY	1 cut(s)	630
BsuRI	GGCC	4 cut(s)	51, 180, 576, 641
BtsCI	GGATG	2 cut(s)	699, 719
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	3 cut(s)	72, 313, 438
CciI	TCATGA	1 cut(s)	457
Cfr10I	RCCGGY	2 cut(s)	47, 311
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	30, 408
CviAII	CATG	3 cut(s)	40, 458, 603
CviQI	GTAC	2 cut(s)	30, 408
DpnI	GATC	1 cut(s)	632
DpnII	GATC	1 cut(s)	630
Eam1104I	CTCTTC	2 cut(s)	94, 640
EarI	CTCTTC	2 cut(s)	94, 640
Eco130I	CCWWGG	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	576
Eco31I	GGTCTC	2 cut(s)	162, 455
EcoRI	GAATTC	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	25, 349
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	3 cut(s)	43, 461, 606
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	3 cut(s)	39, 457, 602
FokI	GGATG	2 cut(s)	706, 706
FspBI	CTAG	3 cut(s)	35, 558, 578
GsaI	CCCAGC	2 cut(s)	136, 617
HaeIII	GGCC	4 cut(s)	51, 180, 576, 641
HapII	CCGG	6 cut(s)	48, 153, 177, 249, 312, 642
HgaI	GACGC	1 cut(s)	317
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	43, 461, 606
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	3 cut(s)	245, 389, 599
HpaII	CCGG	6 cut(s)	48, 153, 177, 249, 312, 642
HphI	GGTGA	3 cut(s)	263, 398, 791
Hpy166II	GTNNAC	2 cut(s)	32, 45
Hpy188I	TCNGA	2 cut(s)	279, 319
Hpy188III	TCNNGA	3 cut(s)	96, 141, 458
Hpy8I	GTNNAC	2 cut(s)	32, 45
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	2 cut(s)	505, 776
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	2 cut(s)	440, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 344
HpySE526I	ACGT	1 cut(s)	281
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	43, 461, 606
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	630
LmnI	GCTCC	3 cut(s)	352, 581, 749
LweI	GCATC	2 cut(s)	646, 728
MaeI	CTAG	3 cut(s)	35, 558, 578
MaeII	ACGT	1 cut(s)	281
MalI	GATC	1 cut(s)	632
MboI	GATC	1 cut(s)	630
MboII	GAAGA	7 cut(s)	81, 84, 250, 657, 665, 681, 749
MflI	RGATCY	1 cut(s)	630
MluCI	AATT	4 cut(s)	13, 333, 453, 492
MluI	ACGCGT	1 cut(s)	220
MroNI	GCCGGC	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	3 cut(s)	20, 432, 678
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	6 cut(s)	48, 153, 177, 249, 312, 642
MspR9I	CCNGG	3 cut(s)	27, 154, 351
MvaI	CCWGG	2 cut(s)	27, 351
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	71, 344
NaeI	GCCGGC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	630
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	3 cut(s)	43, 461, 606
NlaIV	GGNNCC	2 cut(s)	348, 632
NspI	RCATGY	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	236
PagI	TCATGA	1 cut(s)	457
PceI	AGGCCT	1 cut(s)	576
PciI	ACATGT	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	245, 389, 599
PscI	ACATGT	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	773
Psp6I	CCWGG	2 cut(s)	25, 349
PspFI	CCCAGC	2 cut(s)	132, 613
PspGI	CCWGG	2 cut(s)	25, 349
PspN4I	GGNNCC	2 cut(s)	348, 632
PsuI	RGATCY	1 cut(s)	630
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	2 cut(s)	31, 409
RsaNI	GTAC	2 cut(s)	30, 408
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	20, 432, 678
Sau3AI	GATC	1 cut(s)	630
ScrFI	CCNGG	3 cut(s)	27, 154, 351
SfaNI	GCATC	2 cut(s)	646, 728
SfuI	TTCGAA	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	4 cut(s)	13, 333, 453, 492
SseBI	AGGCCT	1 cut(s)	576
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	3 cut(s)	35, 558, 578
StuI	AGGCCT	1 cut(s)	576
StyD4I	CCNGG	3 cut(s)	25, 152, 349
StyI	CCWWGG	1 cut(s)	577
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	2 cut(s)	236, 328
TasI	AATT	4 cut(s)	13, 333, 453, 492
TfiI	GAWTC	3 cut(s)	245, 389, 599
Tru1I	TTAA	3 cut(s)	20, 432, 678
Tru9I	TTAA	3 cut(s)	20, 432, 678
TscAI	CASTG	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	381, 446, 591
TspRI	CASTG	1 cut(s)	550
Vha464I	CTTAAG	1 cut(s)	431
XapI	RAATTY	1 cut(s)	453
XceI	RCATGY	1 cut(s)	43
XmaJI	CCTAGG	1 cut(s)	577
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	3 cut(s)	35, 558, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.