Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

34710128 .. 34710752

Gene Structure 625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCCCCCAGAGTGATATATGTTAAGCAGGTGCTTGACATAGTTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGCTTCACTGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAATGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGACGAACTTTTAATATTGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCCACAGAATACTTGAAGATGGAAATGGAGCTTATTGCATTGGTGAGGTTGTAACTGGTGAAGGAGTGAGTTATAGACAAAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

119

Amino Acids

12.91

Weight (kDa)

6.73

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	1 - 113	6e-21	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	1 cut(s)	19
AclWI	GGATC	2 cut(s)	175, 188
AgsI	TTSAA	2 cut(s)	175, 287
AluBI	AGCT	3 cut(s)	134, 167, 302
AluI	AGCT	3 cut(s)	134, 167, 302
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	2 cut(s)	175, 188
AoxI	GGCC	2 cut(s)	3, 124
AspA2I	CCTAGG	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	326, 341
AvrII	CCTAGG	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	180
BccI	CCATC	2 cut(s)	238, 284
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	108, 128
BfuAI	ACCTGC	1 cut(s)	19
BlnI	CCTAGG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 182
BmsI	GCATC	2 cut(s)	196, 278
BsaJI	CCNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	249, 269
BseNI	ACTGG	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	163
BshFI	GGCC	2 cut(s)	5, 126
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	5, 126
Bsp143I	GATC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	5, 126
BspLI	GGNNCC	2 cut(s)	6, 182
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	175, 188
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	249, 269
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	5, 126
BtsCI	GGATG	2 cut(s)	249, 269
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	8 cut(s)	5, 71, 90, 126, 134, 167, 191, 302
CviKI_1	RGCY	8 cut(s)	5, 71, 90, 126, 134, 167, 191, 302
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	1 cut(s)	156
FaiI	YATR	8 cut(s)	19, 21, 41, 104, 144, 154, 345, 358
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	152
FokI	GGATG	2 cut(s)	256, 256
FspBI	CTAG	2 cut(s)	108, 128
GsaI	CCCAGC	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	5, 126
Hin1II	CATG	1 cut(s)	156
HinfI	GANTC	1 cut(s)	149
HphI	GGTGA	2 cut(s)	326, 341
HpyAV	CCTTC	2 cut(s)	55, 326
HpyCH4V	TGCA	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	131, 299
LpnPI	CCDG	6 cut(s)	14, 22, 66, 177, 177, 312
LweI	GCATC	2 cut(s)	196, 278
MaeI	CTAG	2 cut(s)	108, 128
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	3 cut(s)	207, 215, 299
MflI	RGATCY	1 cut(s)	180
MnlI	CCTC	5 cut(s)	47, 77, 181, 259, 310
MseI	TTAA	2 cut(s)	24, 228
MspA1I	CMGCKG	1 cut(s)	167
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	2 cut(s)	6, 182
PaqCI	CACCTGC	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	149
PspFI	CCCAGC	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	6, 182
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	24, 228
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	8 cut(s)	33, 58, 88, 109, 136, 169, 304, 321
SfaNI	GCATC	2 cut(s)	196, 278
SseBI	AGGCCT	1 cut(s)	126
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	2 cut(s)	108, 128
StuI	AGGCCT	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	2 cut(s)	24, 228
Tru9I	TTAA	2 cut(s)	24, 228
TscAI	CASTG	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	100
XmaJI	CCTAGG	1 cut(s)	127
XspI	CTAG	2 cut(s)	108, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.