Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

28831819 .. 28833819

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTCCACCGGCCTCAAAGCAAACGCAGAGCTTGCTCTTGGCTTTGCCTCTTCTTCAAGACCCTCTTGTTGGAAACCCAACTCCACCCATACCCAGCTATCCAGATTGCCGGCCGGGTCTCTCCCCAACAACTTCTCCGGCCTCTCTATGGCTTCGTCAAGTGGAGTTTCCCAGAGCAAACGCGTATTCTCACTTTCAAAGAATGATTCAGGTGAAAGCTCTCATCAAAATGATGGTCTGACGTATAAGGGTGCTGGTGTTGATATAGACGCCGGCTCGGAACTTGTTCGACGAATTGCTAAGATGGCTCCTGGGATTGGAGGCTTTGGAGGTCTTTTCCCTCTCGGTGATTCGTATCTCGTTGCTGGTACTGATGGTGTGGGAACTAAACTCAAGCTTGCGTTTGATACTGGAATTCATGAGACCATTGGTATTGATTTGGTTGCTATGAGTGTCAATGATATTATCACTTCGGGAGCAAAGCCATTATTTTTCCTTGATTACTTTGCTACTAGCCGCCTTGATGTTGATCTGGCTGAAAAGGTTATCAAGGGAATTGTCGATGGTTGCCAACAATCTGACTGTGCTCTTTTAGGTGGAGAGACTGCCGAGATGCCGGGTTTCTATGCAGAGGGTGAGTATGACCTCAGTGGTTTTGCGGTTGGAATTGTGAAGAAGGAATCAGTGATTGATGGGAAAAACATTTTGGCTGGAGATGTCCTCATTGGCCTACCATCCAGTGGGGTTCATTCCAATGGTTTTTCTCTTGTAAGAAGGGTTCTAGCTCATAGCGGGTTGTCTCTGAAGGACCAACTACCAGGTAGCTCTGTTACCGTGGGTGAAGCTTTGATGGCCCCCACAGTGATATATGTTAATCAGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTTTCACTGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCAGTCATCTATAAAGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGACCGGAAGAGTAGAAGATACTGAAATGAGAAGAACTTTTAATATGGGTATTGGGATGGTTCTTGTTGTGAGTAAGGAGGCATCCGACAGAATACTTGAAGATGGAAATGGAGCTTACTGCATTGGCGAGGTTATAACTGGTGAAGGAGTGAGTTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

400

Amino Acids

41.78

Weight (kDa)

5.36

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	116 - 224	7.5e-24	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	237 - 396	4.4e-35	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1172
AccB7I	CCANNNNNTGG	1 cut(s)	740
AccII	CGCG	1 cut(s)	183
AciI	CCGC	3 cut(s)	517, 659, 792
AclWI	GGATC	2 cut(s)	1024, 1037
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	824
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	4 cut(s)	69, 148, 317, 740
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	4 cut(s)	57, 198, 1024, 1136
AjnI	CCWGG	2 cut(s)	310, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	689, 721
AluBI	AGCT	9 cut(s)	31, 97, 219, 397, 785, 825, 845, 1016, 1151
AluI	AGCT	9 cut(s)	31, 97, 219, 397, 785, 825, 845, 1016, 1151
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	5 cut(s)	123, 416, 596, 804, 1031
AlwI	GGATC	2 cut(s)	1024, 1037
AoxI	GGCC	6 cut(s)	10, 111, 139, 727, 852, 973
ApoI	RAATTY	1 cut(s)	414
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	285
AspA2I	CCTAGG	1 cut(s)	976
AspS9I	GGNCC	2 cut(s)	808, 853
AsuC2I	CCSGG	2 cut(s)	115, 618
AsuHPI	GGTGA	5 cut(s)	224, 359, 647, 851, 1190
AvaII	GGWCC	1 cut(s)	808
AvrII	CCTAGG	1 cut(s)	976
BamHI	GGATCC	1 cut(s)	1029
Bbv12I	GWGCWC	1 cut(s)	589
BccI	CCATC	9 cut(s)	227, 298, 368, 557, 686, 742, 844, 1087, 1133
BciT130I	CCWGG	2 cut(s)	312, 819
BcnI	CCSGG	2 cut(s)	115, 618
BcoDI	GTCTC	5 cut(s)	123, 416, 596, 804, 1031
BfaI	CTAG	4 cut(s)	513, 782, 957, 977
BisI	GCNGC	1 cut(s)	517
BlnI	CCTAGG	1 cut(s)	976
BlsI	GCNGC	1 cut(s)	518
Bme1390I	CCNGG	4 cut(s)	115, 312, 618, 819
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	808, 853
BmiI	GGNNCC	3 cut(s)	309, 855, 1031
BmrFI	CCNGG	4 cut(s)	115, 312, 618, 819
BmsI	GCATC	2 cut(s)	603, 1127
BplI	GAGNNNNNCTC	2 cut(s)	705, 737
BpmI	CTGGAG	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	115, 618
BsaBI	GATNNNNATC	2 cut(s)	354, 528
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	3 cut(s)	123, 416, 1031
BsaJI	CCNNGG	3 cut(s)	311, 834, 976
BsaWI	WCCGGW	1 cut(s)	1040
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 148, 317, 740
Bse118I	RCCGGY	3 cut(s)	8, 109, 272
Bse1I	ACTGG	3 cut(s)	415, 738, 1180
Bse8I	GATNNNNATC	2 cut(s)	354, 528
BseBI	CCWGG	2 cut(s)	312, 819
BseDI	CCNNGG	3 cut(s)	311, 834, 976
BseGI	GGATG	3 cut(s)	734, 1098, 1118
BseJI	GATNNNNATC	2 cut(s)	354, 528
BseLI	CCNNNNNNNGG	4 cut(s)	69, 148, 317, 740
BseMII	CTCAG	1 cut(s)	661
BseNI	ACTGG	3 cut(s)	415, 738, 1180
BseX3I	CGGCCG	1 cut(s)	111
BseYI	CCCAGC	2 cut(s)	93, 1012
Bsh1236I	CGCG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	6 cut(s)	12, 113, 141, 729, 854, 975
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	7 cut(s)	9, 110, 114, 138, 273, 617, 1041
BslFI	GGGAC	1 cut(s)	995
BslI	CCNNNNNNNGG	4 cut(s)	69, 148, 317, 740
BsmAI	GTCTC	5 cut(s)	123, 416, 596, 804, 1031
BsmFI	GGGAC	1 cut(s)	995
BsnI	GGCC	6 cut(s)	12, 113, 141, 729, 854, 975
Bso31I	GGTCTC	3 cut(s)	123, 416, 1031
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	2 cut(s)	529, 1029
BspACI	CCGC	3 cut(s)	517, 659, 792
BspANI	GGCC	6 cut(s)	12, 113, 141, 729, 854, 975
BspCNI	CTCAG	1 cut(s)	660
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	309, 855, 1031
BspPI	GGATC	2 cut(s)	1024, 1037
BspTNI	GGTCTC	3 cut(s)	123, 416, 1031
BsrFI	RCCGGY	3 cut(s)	8, 109, 272
BsrI	ACTGG	3 cut(s)	415, 738, 1180
BssAI	RCCGGY	3 cut(s)	8, 109, 272
BssECI	CCNNGG	3 cut(s)	311, 834, 976
BssMI	GATC	2 cut(s)	529, 1029
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	976
Bst2UI	CCWGG	2 cut(s)	312, 819
Bst4CI	ACNGT	3 cut(s)	584, 835, 862
Bst6I	CTCTTC	2 cut(s)	55, 1039
BstACI	GRCGYC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	4 cut(s)	33, 111, 274, 399
BstDEI	CTNAG	2 cut(s)	300, 647
BstDSI	CCRYGG	1 cut(s)	834
BstF5I	GGATG	3 cut(s)	734, 1098, 1118
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	2 cut(s)	532, 1032
BstMAI	GTCTC	5 cut(s)	123, 416, 596, 804, 1031
BstMBI	GATC	2 cut(s)	529, 1029
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 305, 851
BstNI	CCWGG	2 cut(s)	312, 819
BstSCI	CCNGG	4 cut(s)	113, 310, 616, 817
BstUI	CGCG	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	1029
BstYI	RGATCY	1 cut(s)	1029
BstZI	CGGCCG	1 cut(s)	111
BsuRI	GGCC	6 cut(s)	12, 113, 141, 729, 854, 975
BtgI	CCRYGG	1 cut(s)	834
BtsCI	GGATG	3 cut(s)	734, 1098, 1118
BtsIMutI	CAGTG	5 cut(s)	655, 690, 745, 867, 942
Cac8I	GCNNGC	4 cut(s)	33, 111, 274, 399
CciI	TCATGA	1 cut(s)	418
Cfr10I	RCCGGY	3 cut(s)	8, 109, 272
Cfr13I	GGNCC	2 cut(s)	808, 853
CseI	GACGC	1 cut(s)	278
CsiI	ACCWGGT	1 cut(s)	817
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	2 cut(s)	419, 1002
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	2 cut(s)	300, 647
DpnI	GATC	2 cut(s)	531, 1031
DpnII	GATC	2 cut(s)	529, 1029
EaeI	YGGCCR	1 cut(s)	111
EagI	CGGCCG	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	55, 1039
EarI	CTCTTC	2 cut(s)	55, 1039
EclXI	CGGCCG	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	976
Eco147I	AGGCCT	1 cut(s)	975
Eco31I	GGTCTC	3 cut(s)	123, 416, 1031
Eco47I	GGWCC	1 cut(s)	808
Eco52I	CGGCCG	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	824
EcoRI	GAATTC	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	310, 817
EcoT14I	CCWWGG	1 cut(s)	976
ErhI	CCWWGG	1 cut(s)	976
FaeI	CATG	2 cut(s)	422, 1005
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	1 cut(s)	995
FatI	CATG	2 cut(s)	418, 1001
FauI	CCCGC	1 cut(s)	785
Fnu4HI	GCNGC	1 cut(s)	517
FokI	GGATG	3 cut(s)	721, 1105, 1105
Fsp4HI	GCNGC	1 cut(s)	517
FspBI	CTAG	4 cut(s)	513, 782, 957, 977
GluI	GCNGC	1 cut(s)	517
GsaI	CCCAGC	2 cut(s)	97, 1016
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	6 cut(s)	12, 113, 141, 729, 854, 975
HapII	CCGG	7 cut(s)	9, 110, 114, 138, 273, 617, 1041
HgaI	GACGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	422, 1005
HindIII	AAGCTT	2 cut(s)	395, 843
HinfI	GANTC	4 cut(s)	206, 350, 680, 998
HpaII	CCGG	7 cut(s)	9, 110, 114, 138, 273, 617, 1041
HphI	GGTGA	5 cut(s)	224, 359, 647, 851, 1190
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	5 cut(s)	240, 280, 580, 804, 1123
Hpy188III	TCNNGA	4 cut(s)	57, 102, 419, 474
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	5 cut(s)	670, 768, 799, 904, 1175
HpyCH4III	ACNGT	3 cut(s)	584, 835, 862
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	629, 1158
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 305, 851
HpyF3I	CTNAG	2 cut(s)	300, 647
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	422, 1005
KroI	GCCGGC	2 cut(s)	109, 272
KroNI	GCCGGC	2 cut(s)	111, 274
Kzo9I	GATC	2 cut(s)	529, 1029
LmnI	GCTCC	4 cut(s)	313, 476, 980, 1148
LweI	GCATC	2 cut(s)	603, 1127
MabI	ACCWGGT	1 cut(s)	817
MaeI	CTAG	4 cut(s)	513, 782, 957, 977
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	2 cut(s)	531, 1031
MboI	GATC	2 cut(s)	529, 1029
MboII	GAAGA	7 cut(s)	42, 45, 685, 1056, 1064, 1080, 1148
MflI	RGATCY	1 cut(s)	1029
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	5 cut(s)	294, 414, 555, 666, 891
MluI	ACGCGT	1 cut(s)	181
MmeI	TCCRAC	3 cut(s)	50, 643, 1146
MroNI	GCCGGC	2 cut(s)	109, 272
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	2 cut(s)	873, 1077
MslI	CAYNNNNRTG	2 cut(s)	228, 753
MspA1I	CMGCKG	1 cut(s)	1016
MspI	CCGG	7 cut(s)	9, 110, 114, 138, 273, 617, 1041
MspR9I	CCNGG	4 cut(s)	115, 312, 618, 819
MvaI	CCWGG	2 cut(s)	312, 819
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	3 cut(s)	32, 305, 851
NaeI	GCCGGC	2 cut(s)	111, 274
NciI	CCSGG	2 cut(s)	115, 618
NdeII	GATC	2 cut(s)	529, 1029
NgoMIV	GCCGGC	2 cut(s)	109, 272
NlaIII	CATG	2 cut(s)	422, 1005
NlaIV	GGNNCC	3 cut(s)	309, 855, 1031
NmeAIII	GCCGAG	1 cut(s)	634
PagI	TCATGA	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	975
PdiI	GCCGGC	2 cut(s)	111, 274
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	4 cut(s)	206, 350, 680, 998
PflMI	CCANNNNNTGG	1 cut(s)	740
PkrI	GCNGC	1 cut(s)	518
PsiI	TTATAA	1 cut(s)	1172
Psp6I	CCWGG	2 cut(s)	310, 817
PspFI	CCCAGC	2 cut(s)	93, 1012
PspGI	CCWGG	2 cut(s)	310, 817
PspN4I	GGNNCC	3 cut(s)	309, 855, 1031
PspPI	GGNCC	2 cut(s)	808, 853
PsrI	GAACNNNNNNTAC	2 cut(s)	762, 794
PsuI	RGATCY	1 cut(s)	1029
PvuII	CAGCTG	1 cut(s)	1016
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	2 cut(s)	228, 753
SaqAI	TTAA	2 cut(s)	873, 1077
SatI	GCNGC	1 cut(s)	517
Sau3AI	GATC	2 cut(s)	529, 1029
Sau96I	GGNCC	2 cut(s)	808, 853
ScrFI	CCNGG	4 cut(s)	115, 312, 618, 819
SduI	GDGCHC	1 cut(s)	589
SexAI	ACCWGGT	1 cut(s)	817
SfaNI	GCATC	2 cut(s)	603, 1127
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	2 cut(s)	228, 753
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	5 cut(s)	294, 414, 555, 666, 891
SseBI	AGGCCT	1 cut(s)	975
SsiI	CCGC	3 cut(s)	517, 659, 792
SspMI	CTAG	4 cut(s)	513, 782, 957, 977
StuI	AGGCCT	1 cut(s)	975
StyD4I	CCNGG	4 cut(s)	113, 310, 616, 817
StyI	CCWWGG	1 cut(s)	976
TaaI	ACNGT	3 cut(s)	584, 835, 862
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	289, 561
TasI	AATT	5 cut(s)	294, 414, 555, 666, 891
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	4 cut(s)	206, 350, 680, 998
Tru1I	TTAA	2 cut(s)	873, 1077
Tru9I	TTAA	2 cut(s)	873, 1077
TscAI	CASTG	5 cut(s)	655, 690, 745, 867, 949
TspDTI	ATGAA	3 cut(s)	407, 737, 990
TspRI	CASTG	5 cut(s)	655, 690, 745, 867, 949
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	1 cut(s)	808
XapI	RAATTY	1 cut(s)	414
XmaJI	CCTAGG	1 cut(s)	976
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	4 cut(s)	513, 782, 957, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.