Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006959.1

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

7660 .. 10154

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006959.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgtccactggcctcaaagcaaacacagagcttgctcttggctttgcctcttcttctagacccttttattcgaaacccaactccacccatacccagctatccagattgccattggggtctctccctaacaacttctccagcctctctatggcttcatcgaatggaatttgtcagagcaaacgcgtatgctcactttcgaaggatgattccggtgaaagctctggtcaaaacgatggtctgacatataaggatgctggtgttgatatagactccgggtcgaaagttgttcgacgaattgccaagatggctcctgggattagaggctttggaggtcttttccttctcgcccaagtagccttgtacatggctacatccctaagtgtcaatgatattgtcacttctggagccaagccattatgttttcttgattacttttctacaaaccgtcttgatgttgatcttgctgaaaagactgccgagacgccaggtttctatgcaaagggtgagtatgacctcagtagttttgcggttggatttgtgaacaaggaatcagtgattgatgggaaaaacatttttgctggagacgtcctcattggcctaccatctagtggggttcattccaatgtggctcggttccttggggctggaagggaggcggcttcctttttcttctactctacttggcggcgatggcaaatggtttcgtcagtgtcccatgatggtggttcgatgggctgcgcagactcgagatggtctctcatcggcgtcaagcggcgctgggctgttcgctctgggcgaggtcggatagggactggttgttggctgtggtcgaggatatctgggtttagatccgatcagggacagtttggaagtgatggagggctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

295

Amino Acids

31.55

Weight (kDa)

9.33

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	588
Acc16I	TGCGCA	1 cut(s)	739
AccB7I	CCANNNNNTGG	1 cut(s)	608
AccII	CGCG	1 cut(s)	183
AciI	CCGC	4 cut(s)	527, 656, 685, 772
AclWI	GGATC	1 cut(s)	843
AcsI	RAATTY	1 cut(s)	165
AcyI	GRCGYC	3 cut(s)	482, 585, 765
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	148, 608
AflIII	ACRYGT	1 cut(s)	181
AhdI	GACNNNNNGTC	1 cut(s)	274
AjnI	CCWGG	2 cut(s)	310, 484
AluBI	AGCT	3 cut(s)	31, 97, 219
AluI	AGCT	3 cut(s)	31, 97, 219
Alw26I	GTCTC	4 cut(s)	123, 473, 576, 759
AlwI	GGATC	1 cut(s)	843
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	2 cut(s)	10, 595
ApeKI	GCWGC	1 cut(s)	735
ApoI	RAATTY	1 cut(s)	165
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
AspLEI	GCGC	2 cut(s)	740, 777
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	224, 515
AsuII	TTCGAA	2 cut(s)	71, 197
AvaI	CYCGRG	1 cut(s)	745
BbvI	GCAGC	1 cut(s)	722
BccI	CCATC	9 cut(s)	227, 298, 554, 610, 684, 713, 724, 744, 869
BciT130I	CCWGG	2 cut(s)	312, 486
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	4 cut(s)	123, 473, 576, 759
BfaI	CTAG	2 cut(s)	57, 606
BfoI	RGCGCY	1 cut(s)	778
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	4 cut(s)	657, 686, 736, 773
BlsI	GCNGC	4 cut(s)	658, 687, 737, 774
Bme1390I	CCNGG	3 cut(s)	274, 312, 486
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	745
BmiI	GGNNCC	3 cut(s)	309, 406, 635
BmrFI	CCNGG	3 cut(s)	274, 312, 486
BmsI	GCATC	1 cut(s)	241
BplI	GAGNNNNNCTC	4 cut(s)	573, 605, 739, 771
BpmI	CTGGAG	3 cut(s)	121, 423, 600
Bpu14I	TTCGAA	2 cut(s)	71, 197
BpuMI	CCSGG	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	456
BsaHI	GRCGYC	3 cut(s)	482, 585, 765
BsaI	GGTCTC	2 cut(s)	123, 759
BsaJI	CCNNGG	2 cut(s)	311, 637
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 608
Bse1I	ACTGG	2 cut(s)	13, 817
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	312, 486
BseDI	CCNNGG	2 cut(s)	311, 637
BseGI	GGATG	3 cut(s)	208, 256, 371
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	148, 608
BseMII	CTCAG	1 cut(s)	529
BseNI	ACTGG	2 cut(s)	13, 817
BseXI	GCAGC	1 cut(s)	722
BseYI	CCCAGC	2 cut(s)	93, 777
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	12, 597
BsiHKCI	CYCGRG	1 cut(s)	745
BsiSI	CCGG	2 cut(s)	210, 273
BslFI	GGGAC	3 cut(s)	697, 823, 873
BslI	CCNNNNNNNGG	2 cut(s)	148, 608
BsmAI	GTCTC	4 cut(s)	123, 473, 576, 759
BsmBI	CGTCTC	2 cut(s)	473, 576
BsmFI	GGGAC	3 cut(s)	697, 823, 873
BsnI	GGCC	2 cut(s)	12, 597
Bso31I	GGTCTC	2 cut(s)	123, 759
BsoBI	CYCGRG	1 cut(s)	745
Bsp119I	TTCGAA	2 cut(s)	71, 197
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	457, 848, 853
BspACI	CCGC	4 cut(s)	527, 656, 685, 772
BspANI	GGCC	2 cut(s)	12, 597
BspCNI	CTCAG	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	309, 406, 635
BspPI	GGATC	1 cut(s)	843
BspT104I	TTCGAA	2 cut(s)	71, 197
BspTNI	GGTCTC	2 cut(s)	123, 759
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	13, 817
BssECI	CCNNGG	2 cut(s)	311, 637
BssMI	GATC	3 cut(s)	457, 848, 853
BssNI	GRCGYC	3 cut(s)	482, 585, 765
BssT1I	CCWWGG	1 cut(s)	637
Bst2UI	CCWGG	2 cut(s)	312, 486
Bst4CI	ACNGT	2 cut(s)	446, 864
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	3 cut(s)	482, 585, 765
BstAUI	TGTACA	1 cut(s)	360
BstBI	TTCGAA	2 cut(s)	71, 197
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	377, 515
BstF5I	GGATG	3 cut(s)	208, 256, 371
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	778
BstHHI	GCGC	2 cut(s)	740, 777
BstKTI	GATC	3 cut(s)	460, 851, 856
BstMAI	GTCTC	4 cut(s)	123, 473, 576, 759
BstMBI	GATC	3 cut(s)	457, 848, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 353, 691
BstNI	CCWGG	2 cut(s)	312, 486
BstSCI	CCNGG	3 cut(s)	272, 310, 484
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	722
BstX2I	RGATCY	1 cut(s)	848
BstXI	CCANNNNNNTGG	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	848
BsuRI	GGCC	2 cut(s)	12, 597
BtgZI	GCGATG	1 cut(s)	703
BtsCI	GGATG	3 cut(s)	208, 256, 371
BtsIMutI	CAGTG	3 cut(s)	6, 558, 714
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	2 cut(s)	740, 777
CseI	GACGC	2 cut(s)	490, 754
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	364, 716
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	377, 515
DpnI	GATC	3 cut(s)	459, 850, 855
DpnII	GATC	3 cut(s)	457, 848, 853
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	55
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	637
Eco31I	GGTCTC	2 cut(s)	123, 759
Eco32I	GATATC	1 cut(s)	837
Eco88I	CYCGRG	1 cut(s)	745
EcoRII	CCWGG	2 cut(s)	310, 484
EcoRV	GATATC	1 cut(s)	837
EcoT14I	CCWWGG	1 cut(s)	637
ErhI	CCWWGG	1 cut(s)	637
Esp3I	CGTCTC	2 cut(s)	473, 576
FaeI	CATG	2 cut(s)	367, 719
FaqI	GGGAC	3 cut(s)	697, 823, 873
FatI	CATG	2 cut(s)	363, 715
Fnu4HI	GCNGC	4 cut(s)	657, 686, 736, 773
FokI	GGATG	3 cut(s)	215, 263, 358
Fsp4HI	GCNGC	4 cut(s)	657, 686, 736, 773
FspBI	CTAG	2 cut(s)	57, 606
FspI	TGCGCA	1 cut(s)	739
GlaI	GCGC	2 cut(s)	739, 776
GluI	GCNGC	4 cut(s)	657, 686, 736, 773
GsaI	CCCAGC	2 cut(s)	97, 781
GsuI	CTGGAG	3 cut(s)	121, 423, 600
HaeII	RGCGCY	1 cut(s)	778
HaeIII	GGCC	2 cut(s)	12, 597
HapII	CCGG	2 cut(s)	210, 273
HgaI	GACGC	2 cut(s)	490, 754
HhaI	GCGC	2 cut(s)	740, 777
Hin1I	GRCGYC	3 cut(s)	482, 585, 765
Hin1II	CATG	2 cut(s)	367, 719
Hin6I	GCGC	2 cut(s)	738, 775
HinP1I	GCGC	2 cut(s)	738, 775
HinfI	GANTC	4 cut(s)	206, 269, 548, 743
HpaII	CCGG	2 cut(s)	210, 273
HphI	GGTGA	2 cut(s)	224, 515
Hpy166II	GTNNAC	2 cut(s)	6, 541
Hpy188I	TCNGA	4 cut(s)	174, 240, 804, 853
Hpy188III	TCNNGA	6 cut(s)	57, 102, 402, 425, 449, 747
Hpy8I	GTNNAC	2 cut(s)	6, 541
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	193, 350, 642
HpyCH4III	ACNGT	2 cut(s)	446, 864
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 353, 691
HpyF3I	CTNAG	2 cut(s)	377, 515
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	3 cut(s)	482, 585, 765
Hsp92II	CATG	2 cut(s)	367, 719
HspAI	GCGC	2 cut(s)	738, 775
Kzo9I	GATC	3 cut(s)	457, 848, 853
LmnI	GCTCC	2 cut(s)	313, 404
Lsp1109I	GCAGC	1 cut(s)	722
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	2 cut(s)	57, 606
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	3 cut(s)	459, 850, 855
MboI	GATC	3 cut(s)	457, 848, 853
MboII	GAAGA	3 cut(s)	42, 45, 661
MflI	RGATCY	1 cut(s)	848
MluCI	AATT	2 cut(s)	165, 294
MluI	ACGCGT	1 cut(s)	181
MlyI	GAGTC	2 cut(s)	263, 737
MmeI	TCCRAC	2 cut(s)	511, 782
MslI	CAYNNNNRTG	2 cut(s)	621, 720
MspI	CCGG	2 cut(s)	210, 273
MspR9I	CCNGG	3 cut(s)	274, 312, 486
MvaI	CCWGG	2 cut(s)	312, 486
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	3 cut(s)	305, 353, 691
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	3 cut(s)	457, 848, 853
NlaIII	CATG	2 cut(s)	367, 719
NlaIV	GGNNCC	3 cut(s)	309, 406, 635
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	394
NsbI	TGCGCA	1 cut(s)	739
NspV	TTCGAA	2 cut(s)	71, 197
PaeR7I	CTCGAG	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	206, 548
PflMI	CCANNNNNTGG	1 cut(s)	608
PkrI	GCNGC	4 cut(s)	658, 687, 737, 774
PleI	GAGTC	2 cut(s)	263, 737
PpsI	GAGTC	2 cut(s)	263, 737
Psp6I	CCWGG	2 cut(s)	310, 484
PspFI	CCCAGC	2 cut(s)	93, 777
PspGI	CCWGG	2 cut(s)	310, 484
PspN4I	GGNNCC	3 cut(s)	309, 406, 635
PsuI	RGATCY	1 cut(s)	848
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	2 cut(s)	621, 720
SatI	GCNGC	4 cut(s)	657, 686, 736, 773
Sau3AI	GATC	3 cut(s)	457, 848, 853
SchI	GAGTC	2 cut(s)	263, 737
ScrFI	CCNGG	3 cut(s)	274, 312, 486
SetI	ASST	8 cut(s)	33, 99, 221, 334, 490, 516, 588, 802
SfaNI	GCATC	1 cut(s)	241
Sfr274I	CTCGAG	1 cut(s)	745
SfuI	TTCGAA	2 cut(s)	71, 197
SlaI	CTCGAG	1 cut(s)	745
SmiMI	CAYNNNNRTG	2 cut(s)	621, 720
SmlI	CTYRAG	1 cut(s)	745
SmoI	CTYRAG	1 cut(s)	745
Sse9I	AATT	2 cut(s)	165, 294
SsiI	CCGC	4 cut(s)	527, 656, 685, 772
SspMI	CTAG	2 cut(s)	57, 606
StyD4I	CCNGG	3 cut(s)	272, 310, 484
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	2 cut(s)	446, 864
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	8 cut(s)	71, 158, 197, 278, 289, 728, 746, 830
TasI	AATT	2 cut(s)	165, 294
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	3 cut(s)	659, 688, 775
TfiI	GAWTC	2 cut(s)	206, 548
TscAI	CASTG	3 cut(s)	13, 558, 714
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	1 cut(s)	735
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	144, 605
TspRI	CASTG	3 cut(s)	13, 558, 714
Van91I	CCANNNNNTGG	1 cut(s)	608
XapI	RAATTY	1 cut(s)	165
XbaI	TCTAGA	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	2 cut(s)	109, 145
XhoI	CTCGAG	1 cut(s)	745
XspI	CTAG	2 cut(s)	57, 606
ZraI	GACGTC	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.