Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

31197982 .. 31198341

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG277100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCCACCGGCCTCAAAGCAAACGCAGAGCTTGCTCTTGGCTTTGCCTCTTCTTCAAGACCCTCTTATTGGAAACCCAACTCCACCCATACCCAGCTATCCAGCTTGCCGTCGGGGTCTCTCTCCAACAACTTCTCCGGCCTCTCTATGGCTTCGTCAAGTGGAGTTTCCCAGAGCAAACGCGTATGCTCACTTTCGAAGAATGATTCCGGTGAAAGCTCTGATAAAAATGATGGTCTGACGTATAAGGGTGCTGGTGTTGATATAGATGCCGGATCGGAACTTGTTCGACGAATTGCCAAGATGGCTCCTGGGATTGGAGGCTTTGGAGGTCTTTTCCCTCTCGGTATGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

119

Amino Acids

12.21

Weight (kDa)

9.46

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	183
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	69, 148, 317
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	4 cut(s)	31, 97, 105, 219
AluI	AGCT	4 cut(s)	31, 97, 105, 219
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	2 cut(s)	10, 139
ApoI	RAATTY	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	197
BccI	CCATC	2 cut(s)	227, 298
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 148, 317
Bse118I	RCCGGY	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	311
BseLI	CCNNNNNNNGG	3 cut(s)	69, 148, 317
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	12, 141
BsiSI	CCGG	4 cut(s)	9, 138, 210, 273
BslI	CCNNNNNNNGG	3 cut(s)	69, 148, 317
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	12, 141
Bso31I	GGTCTC	1 cut(s)	123
Bsp119I	TTCGAA	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	275
BspANI	GGCC	2 cut(s)	12, 141
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	33, 107
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 305
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstUI	CGCG	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	12, 141
Cac8I	GCNNGC	2 cut(s)	33, 107
Cfr10I	RCCGGY	1 cut(s)	8
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	310
FaiI	YATR	6 cut(s)	90, 149, 187, 246, 266, 350
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	12, 141
HapII	CCGG	4 cut(s)	9, 138, 210, 273
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	4 cut(s)	9, 138, 210, 273
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	223, 240, 280
Hpy188III	TCNNGA	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	115, 294
HpyCH4IV	ACGT	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 305
HpySE526I	ACGT	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	313
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	242
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	3 cut(s)	42, 45, 211
MluCI	AATT	2 cut(s)	294, 353
MluI	ACGCGT	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	7 cut(s)	23, 58, 73, 152, 314, 323, 351
MroXI	GAANNNNTTC	1 cut(s)	285
MspI	CCGG	4 cut(s)	9, 138, 210, 273
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	32, 305
NdeII	GATC	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	309
NspV	TTCGAA	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	6 cut(s)	33, 99, 107, 221, 245, 334
SfaNI	GCATC	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	197
Sse9I	AATT	2 cut(s)	294, 353
StyD4I	CCNGG	1 cut(s)	310
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	197, 289
TasI	AATT	2 cut(s)	294, 353
TfiI	GAWTC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.