Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

3033210 .. 3036636

Gene Structure 3427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAAGATTTCAGTGGATTGTTGTTGGACGAGAACCTGGTGGCACAAGCTATCAAGCTACTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCTATCGGAAATGGAACGCCTGAAGAATTAGTAGAACAGTTCTGGTTTTCCATTGTGGATTTCTTTAAGGAGCTTCCACAGTTTATTGTTAAGGCCGGCCCAATTTTAAGTAATCTGTATGGTGTAGATTGGGAGAGCAAACTTGAGGTATTGTTTAAGGCAGACCGCATCAAGAAAGGACGAGGTTCTGTTGAATGGAAGAACATGGCAACTGCCAAGATGCCGGGTTTCTATGCAGAGGGTGAGTATGACCTCAGTGGTTTTGCAGTTGTAATTGTGAACAAGGAATCAGTGATTAAAATGATAAGAATATTGTGGCTGGAGATGTCCTCATCGGCCTACCATCCAATGGAGTTCATTCCAATGGACCAATTACCAGGTATATCTGTTACCTTAGGTGAAGCTCTGATAGCCCCCACAGTGATATATGTTAAGCAGGGAGTTGTGAAGGGGGTAGTCCACATCACAGGAGGTGGTTTCACCGACAATATACCTAGAGTATTTCCAAAAGGCCTAGGAGCTGTCATCTATAATCACTCATGGGAAGTCCAAGTTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

236

Amino Acids

26.26

Weight (kDa)

5.21

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	157 - 228	3.4e-08	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	448
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	2 cut(s)	661, 674
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	293, 661
AjnI	CCWGG	2 cut(s)	36, 475
AluBI	AGCT	6 cut(s)	50, 58, 101, 172, 503, 620
AluI	AGCT	6 cut(s)	50, 58, 101, 172, 503, 620
AlwI	GGATC	2 cut(s)	661, 674
AoxI	GGCC	4 cut(s)	192, 196, 435, 610
ApoI	RAATTY	1 cut(s)	91
AspA2I	CCTAGG	1 cut(s)	613
AspS9I	GGNCC	2 cut(s)	197, 466
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	3 cut(s)	353, 509, 571
AvaII	GGWCC	1 cut(s)	466
AvrII	CCTAGG	1 cut(s)	613
AxyI	CCTNAGG	1 cut(s)	493
BamHI	GGATCC	1 cut(s)	666
BccI	CCATC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	38, 477
BcnI	CCSGG	1 cut(s)	324
BfaI	CTAG	2 cut(s)	594, 614
BlnI	CCTAGG	1 cut(s)	613
Bme1390I	CCNGG	3 cut(s)	38, 324, 477
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	197, 466
BmiI	GGNNCC	1 cut(s)	668
BmrFI	CCNGG	3 cut(s)	38, 324, 477
BmsI	GCATC	3 cut(s)	276, 309, 682
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	1 cut(s)	194
Bse21I	CCTNAGG	1 cut(s)	493
BseBI	CCWGG	2 cut(s)	38, 477
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	367
BshFI	GGCC	4 cut(s)	194, 198, 437, 612
BsiSI	CCGG	2 cut(s)	195, 323
BslI	CCNNNNNNNGG	1 cut(s)	448
BsnI	GGCC	4 cut(s)	194, 198, 437, 612
Bsp143I	GATC	1 cut(s)	666
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	4 cut(s)	194, 198, 437, 612
BspCNI	CTCAG	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	668
BspPI	GGATC	2 cut(s)	661, 674
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	1 cut(s)	666
BssT1I	CCWWGG	1 cut(s)	613
Bst2UI	CCWGG	2 cut(s)	38, 477
Bst4CI	ACNGT	3 cut(s)	138, 180, 520
Bst6I	CTCTTC	1 cut(s)	676
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	353, 493
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	1 cut(s)	669
BstMBI	GATC	1 cut(s)	666
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	2 cut(s)	38, 477
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	3 cut(s)	36, 322, 475
BstX2I	RGATCY	1 cut(s)	666
BstXI	CCANNNNNNTGG	1 cut(s)	677
BstYI	RGATCY	1 cut(s)	666
Bsu36I	CCTNAGG	1 cut(s)	493
BsuRI	GGCC	4 cut(s)	194, 198, 437, 612
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	4 cut(s)	19, 361, 396, 525
Cac8I	GCNNGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	197, 466
CsiI	ACCWGGT	2 cut(s)	36, 475
CviAII	CATG	3 cut(s)	77, 304, 639
DdeI	CTNAG	2 cut(s)	353, 493
DpnI	GATC	1 cut(s)	668
DpnII	GATC	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	676
EarI	CTCTTC	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	613
Eco147I	AGGCCT	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	141
Eco81I	CCTNAGG	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	36, 475
EcoT14I	CCWWGG	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	3 cut(s)	80, 307, 642
FatI	CATG	3 cut(s)	76, 303, 638
FokI	GGATG	1 cut(s)	429
FseI	GGCCGGCC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	594, 614
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	4 cut(s)	194, 198, 437, 612
HapII	CCGG	2 cut(s)	195, 323
Hin1II	CATG	3 cut(s)	80, 307, 642
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	2 cut(s)	195, 323
HphI	GGTGA	3 cut(s)	353, 509, 571
Hpy166II	GTNNAC	2 cut(s)	379, 559
Hpy188I	TCNGA	2 cut(s)	107, 507
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	2 cut(s)	379, 559
HpyAV	CCTTC	1 cut(s)	541
HpyCH4III	ACNGT	3 cut(s)	138, 180, 520
HpyCH4V	TGCA	2 cut(s)	335, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	2 cut(s)	353, 493
Hsp92II	CATG	3 cut(s)	80, 307, 642
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	169, 617
LweI	GCATC	3 cut(s)	276, 309, 682
MabI	ACCWGGT	2 cut(s)	36, 475
MaeI	CTAG	2 cut(s)	594, 614
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	1 cut(s)	668
MboI	GATC	1 cut(s)	666
MboII	GAAGA	5 cut(s)	17, 134, 310, 693, 701
MflI	RGATCY	1 cut(s)	666
MluCI	AATT	5 cut(s)	91, 125, 201, 372, 470
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	7 cut(s)	238, 275, 331, 362, 439, 563, 667
MroNI	GCCGGC	1 cut(s)	194
MseI	TTAA	6 cut(s)	165, 189, 206, 255, 396, 531
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	2 cut(s)	195, 323
MspR9I	CCNGG	3 cut(s)	38, 324, 477
MvaI	CCWGG	2 cut(s)	38, 477
MwoI	GCNNNNNNNGC	1 cut(s)	509
NaeI	GCCGGC	1 cut(s)	196
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	1 cut(s)	666
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	3 cut(s)	80, 307, 642
NlaIV	GGNNCC	1 cut(s)	668
NspI	RCATGY	1 cut(s)	80
PceI	AGGCCT	1 cut(s)	612
PciI	ACATGT	1 cut(s)	76
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	448
PscI	ACATGT	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	36, 475
PspGI	CCWGG	2 cut(s)	36, 475
PspN4I	GGNNCC	1 cut(s)	668
PspPI	GGNCC	2 cut(s)	197, 466
PsuI	RGATCY	1 cut(s)	666
RigI	GGCCGGCC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	6 cut(s)	165, 189, 206, 255, 396, 531
Sau3AI	GATC	1 cut(s)	666
Sau96I	GGNCC	2 cut(s)	197, 466
ScrFI	CCNGG	3 cut(s)	38, 324, 477
SexAI	ACCWGGT	2 cut(s)	36, 475
SfaNI	GCATC	3 cut(s)	276, 309, 682
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	5 cut(s)	91, 125, 201, 372, 470
SseBI	AGGCCT	1 cut(s)	612
SsiI	CCGC	1 cut(s)	265
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	2 cut(s)	594, 614
StuI	AGGCCT	1 cut(s)	612
StyD4I	CCNGG	3 cut(s)	36, 322, 475
StyI	CCWWGG	1 cut(s)	613
TaaI	ACNGT	3 cut(s)	138, 180, 520
TasI	AATT	5 cut(s)	91, 125, 201, 372, 470
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	6 cut(s)	165, 189, 206, 255, 396, 531
Tru9I	TTAA	6 cut(s)	165, 189, 206, 255, 396, 531
TscAI	CASTG	4 cut(s)	19, 361, 396, 525
TspDTI	ATGAA	1 cut(s)	445
TspRI	CASTG	4 cut(s)	19, 361, 396, 525
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	80
XmaJI	CCTAGG	1 cut(s)	613
XspI	CTAG	2 cut(s)	594, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.