Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

58208322 .. 58208799

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG421800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCCCCCACAGTGATATATGTTAAGCCGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTTTCATCGACAATATACCTAGAGTATTTCCAAAAGGCCTAAGAGCTGTCATCTATAAAGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGCTGGAAGAGTAGAAGATGCTGAAATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

73

Amino Acids

8.04

Weight (kDa)

9.16

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	1 - 68	1.8e-12	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	175, 188
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	2 cut(s)	134, 167
AluI	AGCT	2 cut(s)	134, 167
AlwI	GGATC	2 cut(s)	175, 188
AoxI	GGCC	2 cut(s)	3, 124
AspS9I	GGNCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 182
BmsI	GCATC	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	28
BseYI	CCCAGC	1 cut(s)	163
BshFI	GGCC	2 cut(s)	5, 126
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	5, 126
Bsp143I	GATC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	5, 126
BspLI	GGNNCC	2 cut(s)	6, 182
BspPI	GGATC	2 cut(s)	175, 188
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssMI	GATC	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	128
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	5, 126
BtsIMutI	CAGTG	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	7 cut(s)	5, 28, 71, 126, 134, 167, 191
CviKI_1	RGCY	7 cut(s)	5, 28, 71, 126, 134, 167, 191
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco147I	AGGCCT	1 cut(s)	126
FaeI	CATG	1 cut(s)	156
FaiI	YATR	6 cut(s)	19, 21, 41, 104, 144, 154
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	152
FspBI	CTAG	1 cut(s)	108
GsaI	CCCAGC	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	5, 126
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	1 cut(s)	156
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	4 cut(s)	42, 66, 177, 177
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	108
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	207, 215
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	3 cut(s)	47, 77, 181
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	29
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	2 cut(s)	6, 182
PceI	AGGCCT	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	149
PspFI	CCCAGC	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	6, 182
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	5 cut(s)	58, 88, 109, 136, 169
SfaNI	GCATC	1 cut(s)	196
SgeI	CNNG	9 cut(s)	41, 47, 61, 93, 120, 165, 176, 197, 204
Sse9I	AATT	1 cut(s)	42
SseBI	AGGCCT	1 cut(s)	126
SspMI	CTAG	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	82, 141
TspRI	CASTG	1 cut(s)	18
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.