Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

64155959 .. 64158983

Gene Structure 3025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33587

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCTTCATCGAGTGGAATTTGTCAGAGCAAACGCGTATGCTCACTTTCGAAGGATGATTCCTATGAAACCTCTGGTCAAAACGATGGTCTGACATATAAGGATGCTAGTGTTGATATAGACGCCGGTGATTCATATCTTGTTGCTGGTACTGATGGTGTGGGAACTAAACTTAAGCTTGCATTTGATACCAAAATTCATGAGACCATTGGTATTGATTTGGTAATACTAATACCCAAGATGAGTCATATGGTGGAGAGGACCAACTACTGGGTAACTCTTACCTTGGGTGAAGCTTTGATGGCCCCCACAGTGATATATGTTAAGCCGGTGCTTGACATAATTAGCAAGGGAGGTGTGAAGGGGGTAGCCCACATCACAGGAGGTGGTTTCATCGACAATATACCTAGAGTATTTCCAAAAGGCCTAAGAGCTGTCATCTATAAAGATTCATGGGAAGTCCCAGCTGTTTTCAAATGGATCCAAGAGGAGGCATCCCACAAAATACTTGAAGATGGAAATGGAGCTTACTGCATTGGTGAGGTTATAACTGGTGAAGGAGTGAGTTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

191

Amino Acids

20.62

Weight (kDa)

5.35

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS_C	PF02769	95 - 165	1.8e-13	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	548
AccB7I	CCANNNNNTGG	1 cut(s)	270
AccII	CGCG	1 cut(s)	36
AclWI	GGATC	2 cut(s)	475, 488
AcsI	RAATTY	2 cut(s)	18, 195
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	270, 490
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	475, 512
AluBI	AGCT	5 cut(s)	178, 296, 434, 467, 527
AluI	AGCT	5 cut(s)	178, 296, 434, 467, 527
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	2 cut(s)	475, 488
AoxI	GGCC	2 cut(s)	303, 424
ApoI	RAATTY	2 cut(s)	18, 195
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
AspS9I	GGNCC	2 cut(s)	261, 304
AsuHPI	GGTGA	4 cut(s)	140, 302, 551, 566
AsuII	TTCGAA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	480
BccI	CCATC	4 cut(s)	80, 149, 295, 509
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	2 cut(s)	108, 408
BfrI	CTTAAG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	261, 304
BmiI	GGNNCC	2 cut(s)	306, 482
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	2 cut(s)	94, 503
BmuI	ACTGGG	1 cut(s)	280
Bpu14I	TTCGAA	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 490
Bse118I	RCCGGY	2 cut(s)	125, 328
Bse1I	ACTGG	2 cut(s)	275, 556
Bse8I	GATNNNNATC	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	3 cut(s)	61, 109, 494
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	270, 490
BseNI	ACTGG	2 cut(s)	275, 556
BseRI	GAGGAG	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	463
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	305, 426
BsiSI	CCGG	2 cut(s)	126, 329
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	2 cut(s)	270, 490
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	305, 426
Bso31I	GGTCTC	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	305, 426
BspFNI	CGCG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	306, 482
BspPI	GGATC	2 cut(s)	475, 488
BspT104I	TTCGAA	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	197
BsrFI	RCCGGY	2 cut(s)	125, 328
BsrI	ACTGG	2 cut(s)	275, 556
BssAI	RCCGGY	2 cut(s)	125, 328
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	480
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	123
BstAFI	CTTAAG	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	428
BstF5I	GGATG	3 cut(s)	61, 109, 494
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	483
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstUI	CGCG	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	305, 426
BtsCI	GGATG	3 cut(s)	61, 109, 494
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	180
CciI	TCATGA	1 cut(s)	199
Cfr10I	RCCGGY	2 cut(s)	125, 328
Cfr13I	GGNCC	2 cut(s)	261, 304
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	2 cut(s)	200, 453
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	2 cut(s)	203, 456
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	2 cut(s)	199, 452
FauNDI	CATATG	1 cut(s)	249
FokI	GGATG	3 cut(s)	68, 116, 481
FspBI	CTAG	2 cut(s)	108, 408
GsaI	CCCAGC	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	305, 426
HapII	CCGG	2 cut(s)	126, 329
HgaI	GACGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	203, 456
HindIII	AAGCTT	2 cut(s)	176, 294
HinfI	GANTC	4 cut(s)	59, 131, 244, 449
HpaII	CCGG	2 cut(s)	126, 329
HphI	GGTGA	4 cut(s)	140, 302, 551, 566
Hpy188I	TCNGA	2 cut(s)	27, 93
Hpy188III	TCNNGA	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	46, 355, 551
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	182, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	428
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	203, 456
Kzo9I	GATC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	524
LpnPI	CCDG	8 cut(s)	60, 132, 139, 256, 342, 366, 477, 537
LweI	GCATC	2 cut(s)	94, 503
MaeI	CTAG	2 cut(s)	108, 408
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	1 cut(s)	524
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	3 cut(s)	18, 195, 342
MluI	ACGCGT	1 cut(s)	34
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	7 cut(s)	82, 252, 347, 377, 481, 484, 535
MseI	TTAA	2 cut(s)	174, 324
MspA1I	CMGCKG	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	2 cut(s)	126, 329
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	2 cut(s)	203, 456
NlaIV	GGNNCC	2 cut(s)	306, 482
NspV	TTCGAA	1 cut(s)	50
PagI	TCATGA	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	59, 131, 449
PflMI	CCANNNNNTGG	1 cut(s)	270
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	548
PspFI	CCCAGC	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	306, 482
PspPI	GGNCC	2 cut(s)	261, 304
PsuI	RGATCY	1 cut(s)	480
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	174, 324
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	2 cut(s)	261, 304
SchI	GAGTC	1 cut(s)	253
SfaNI	GCATC	2 cut(s)	94, 503
SfuI	TTCGAA	1 cut(s)	50
SgrAI	CRCCGGYG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	18, 195, 342
SseBI	AGGCCT	1 cut(s)	426
SspMI	CTAG	2 cut(s)	108, 408
StuI	AGGCCT	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	3 cut(s)	11, 50, 396
TasI	AATT	3 cut(s)	18, 195, 342
TfiI	GAWTC	3 cut(s)	59, 131, 449
Tru1I	TTAA	2 cut(s)	174, 324
Tru9I	TTAA	2 cut(s)	174, 324
TscAI	CASTG	1 cut(s)	318
TspDTI	ATGAA	5 cut(s)	81, 123, 188, 382, 441
TspRI	CASTG	1 cut(s)	318
Van91I	CCANNNNNTGG	1 cut(s)	270
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	2 cut(s)	18, 195
XspI	CTAG	2 cut(s)	108, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.