Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

20409538 .. 20437169

Gene Structure 27632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0213700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCAAAGCTCCGGAGCATGAACACCCCAAGAAGGCCTTTGGATGGGCTGCCAGAGATTCATCTGGCCTTCTATCTCCCTTCAGTTTCTCAAGAAGGGAATCCGGAGAGAAAGATGTGACATTCAAAGTGTTGTACTGTGGGATTTGCCATTCGGACCTTCACATGGTCAAGAATGAATGGGGCTTCTCTACCTATCCTCTAGTTCCCGGGCATGAGATTGTCGGTGAAGTGACGGAAGTAGGGAGCAATGTACAAAAATTCAAAGTTGGAGACAAAGTCGGTGTTGGATCCATAGTGGGAGCTTGCCGATCTTGTGATAGTTGTACCGACCATCTTGAGAACTACTGCCCCAAACAAATACTCACGATCAGTGGCAAGTACTATGACGGAATCACCAACTATGGCGGTTACTCTGACATTATGGTTGCCGATGAACACTTCGTAGTCCGTATCCCGGACAGCCTACCCCTTGATGGTGCTGCTCCTCTCCTATGTGCCGGAATCACAACCTACAGCCCGTTGAGATATTTTGGACTTGACAAGCCCGGCATGCATGTGGGCGTGGTTGGCCTTGGTGGTTTAGGCCACGTCGCAGTGAAGTTTGCCAAGGCAATGGGAGTGAAGGTTACAGTGATCAGTACGTCCCCTAATAAGAAGGAGGAAGCAGTTAAACACCTAGGAGCTGATTCGTTTTTGGTTAGTCGTGACCAAGATCAAATGCAGGCTGCCATGGGAAAACTGGATGGCATCGTTGACACGGTTTCGGCTGCTTATCCTCTCTTTCCTTTGATCCGTTTGCTAAAGACGGATGGGAAGCTTGTAATAGTCGGTGCACCGGAGAAGGCTCTTGAGCTTCCAGTTTTTCCTCTGCTAATGGGAAGGAAGGTGGTAGCTGGTAGCAAAATTGGAGGTACGAAGGAGACACAAGAGATGATTGATTTTGCAGCCAATAAGCACAAGTTGTCAATGGTGAAGCACACCCTCCTTGACAAATCTATAGATTGCAATGCAGCTGTGGTATTATTGATAGAAAAGAAATATTTAGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

351

Amino Acids

37.87

Weight (kDa)

8.29

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 154	1.3e-27	Alcohol dehydrogenase GroES-like domain
2-Hacid_dh_C	PF02826	176 - 226	9.4e-06	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
ADH_zinc_N	PF00107	194 - 317	9.3e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	13, 104
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	3 cut(s)	285, 298, 787
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	6 cut(s)	137, 255, 328, 383, 643, 916
AfiI	CCNNNNNNNGG	5 cut(s)	34, 45, 166, 457, 476
AgsI	TTSAA	2 cut(s)	127, 265
AjiI	CACGTC	1 cut(s)	592
AluBI	AGCT	7 cut(s)	11, 305, 686, 820, 856, 896, 1016
AluI	AGCT	7 cut(s)	11, 305, 686, 820, 856, 896, 1016
Alw21I	GWGCWC	1 cut(s)	838
Alw26I	GTCTC	2 cut(s)	267, 917
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	3 cut(s)	285, 298, 787
Ama87I	CYCGRG	1 cut(s)	209
Aor13HI	TCCGGA	2 cut(s)	13, 104
AoxI	GGCC	5 cut(s)	3, 36, 67, 571, 586
ApaLI	GTGCAC	1 cut(s)	834
ApeKI	GCWGC	6 cut(s)	50, 482, 728, 770, 947, 1013
ApoI	RAATTY	1 cut(s)	260
AspA2I	CCTAGG	1 cut(s)	679
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	4 cut(s)	210, 211, 458, 549
AsuHPI	GGTGA	3 cut(s)	239, 388, 985
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	157
AvrII	CCTAGG	1 cut(s)	679
BaeGI	GKGCMC	1 cut(s)	838
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	838
BbvI	GCAGC	6 cut(s)	37, 469, 715, 757, 959, 1025
BccI	CCATC	5 cut(s)	39, 342, 470, 740, 806
BciVI	GTATCC	1 cut(s)	464
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	4 cut(s)	210, 211, 458, 549
BcoDI	GTCTC	2 cut(s)	267, 917
BfaI	CTAG	2 cut(s)	203, 680
BfmI	CTRYAG	2 cut(s)	514, 999
BfuI	GTATCC	1 cut(s)	464
BisI	GCNGC	6 cut(s)	51, 483, 729, 771, 948, 1014
BlnI	CCTAGG	1 cut(s)	679
BlsI	GCNGC	6 cut(s)	52, 484, 730, 772, 949, 1015
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	4 cut(s)	210, 211, 458, 549
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	4 cut(s)	210, 211, 458, 549
BmsI	GCATC	1 cut(s)	759
BpuEI	CTTGAG	3 cut(s)	76, 359, 872
BpuMI	CCSGG	4 cut(s)	210, 211, 458, 549
BsaJI	CCNNGG	5 cut(s)	209, 574, 609, 679, 732
BsaWI	WCCGGW	3 cut(s)	13, 104, 838
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 612, 642
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 45, 166, 457, 476
Bse1I	ACTGG	2 cut(s)	747, 860
Bse3DI	GCAATG	3 cut(s)	256, 621, 1015
BseAI	TCCGGA	2 cut(s)	13, 104
BseDI	CCNNGG	5 cut(s)	209, 574, 609, 679, 732
BseGI	GGATG	3 cut(s)	50, 751, 817
BseLI	CCNNNNNNNGG	5 cut(s)	34, 45, 166, 457, 476
BseMI	GCAATG	3 cut(s)	256, 621, 1015
BseNI	ACTGG	2 cut(s)	747, 860
BseRI	GAGGAG	1 cut(s)	477
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	6 cut(s)	37, 469, 715, 757, 959, 1025
BshFI	GGCC	5 cut(s)	5, 38, 69, 573, 588
BsiHKAI	GWGCWC	1 cut(s)	838
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	7 cut(s)	14, 105, 210, 458, 501, 549, 839
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	5 cut(s)	34, 45, 166, 457, 476
BsmAI	GTCTC	2 cut(s)	267, 917
BsmFI	GGGAC	1 cut(s)	631
BsnI	GGCC	5 cut(s)	5, 38, 69, 573, 588
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	838
Bsp13I	TCCGGA	2 cut(s)	13, 104
Bsp1407I	TGTACA	1 cut(s)	253
Bsp143I	GATC	6 cut(s)	290, 311, 369, 636, 715, 792
Bsp19I	CCATGG	1 cut(s)	732
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	5 cut(s)	5, 38, 69, 573, 588
BspEI	TCCGGA	2 cut(s)	13, 104
BspLI	GGNNCC	1 cut(s)	292
BspPI	GGATC	3 cut(s)	285, 298, 787
BsrDI	GCAATG	3 cut(s)	256, 621, 1015
BsrGI	TGTACA	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	747, 860
BssECI	CCNNGG	5 cut(s)	209, 574, 609, 679, 732
BssMI	GATC	6 cut(s)	290, 311, 369, 636, 715, 792
BssT1I	CCWWGG	4 cut(s)	574, 609, 679, 732
Bst4CI	ACNGT	3 cut(s)	140, 634, 763
BstAUI	TGTACA	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	307, 554, 726
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	3 cut(s)	50, 751, 817
BstKTI	GATC	6 cut(s)	293, 314, 372, 639, 718, 795
BstMAI	GTCTC	2 cut(s)	267, 917
BstMBI	GATC	6 cut(s)	290, 311, 369, 636, 715, 792
BstMWI	GCNNNNNNNGC	2 cut(s)	553, 570
BstNSI	RCATGY	2 cut(s)	556, 560
BstSCI	CCNGG	4 cut(s)	208, 209, 456, 547
BstSFI	CTRYAG	2 cut(s)	514, 999
BstSLI	GKGCMC	1 cut(s)	838
BstV1I	GCAGC	6 cut(s)	37, 469, 715, 757, 959, 1025
BstX2I	RGATCY	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	5 cut(s)	5, 38, 69, 573, 588
BtgI	CCRYGG	1 cut(s)	732
BtrI	CACGTC	1 cut(s)	592
BtsCI	GGATG	3 cut(s)	50, 751, 817
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	3 cut(s)	379, 603, 639
Cac8I	GCNNGC	3 cut(s)	307, 554, 726
Cfr13I	GGNCC	1 cut(s)	157
Cfr9I	CCCGGG	1 cut(s)	209
Csp6I	GTAC	6 cut(s)	136, 254, 327, 382, 642, 915
CviAII	CATG	6 cut(s)	20, 166, 215, 553, 557, 733
CviQI	GTAC	6 cut(s)	136, 254, 327, 382, 642, 915
DpnI	GATC	6 cut(s)	292, 313, 371, 638, 717, 794
DpnII	GATC	6 cut(s)	290, 311, 369, 636, 715, 792
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	4 cut(s)	574, 609, 679, 732
Eco147I	AGGCCT	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	209
EcoT14I	CCWWGG	4 cut(s)	574, 609, 679, 732
EcoT22I	ATGCAT	1 cut(s)	558
ErhI	CCWWGG	4 cut(s)	574, 609, 679, 732
FaeI	CATG	6 cut(s)	23, 169, 218, 556, 560, 736
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	6 cut(s)	19, 165, 214, 552, 556, 732
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	6 cut(s)	51, 483, 729, 771, 948, 1014
FokI	GGATG	3 cut(s)	57, 758, 824
Fsp4HI	GCNGC	6 cut(s)	51, 483, 729, 771, 948, 1014
FspBI	CTAG	2 cut(s)	203, 680
GluI	GCNGC	6 cut(s)	51, 483, 729, 771, 948, 1014
HaeIII	GGCC	5 cut(s)	5, 38, 69, 573, 588
HapII	CCGG	7 cut(s)	14, 105, 210, 458, 501, 549, 839
Hin1II	CATG	6 cut(s)	23, 169, 218, 556, 560, 736
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	5 cut(s)	59, 101, 393, 504, 689
HpaII	CCGG	7 cut(s)	14, 105, 210, 458, 501, 549, 839
HphI	GGTGA	3 cut(s)	239, 388, 985
Hpy166II	GTNNAC	2 cut(s)	757, 836
Hpy188I	TCNGA	2 cut(s)	157, 418
Hpy188III	TCNNGA	8 cut(s)	14, 93, 105, 172, 338, 367, 707, 851
Hpy8I	GTNNAC	2 cut(s)	757, 836
Hpy99I	CGWCG	1 cut(s)	596
HpyCH4III	ACNGT	3 cut(s)	140, 634, 763
HpyCH4IV	ACGT	2 cut(s)	591, 644
HpyCH4V	TGCA	6 cut(s)	556, 724, 836, 947, 1008, 1013
HpyF10VI	GCNNNNNNNGC	2 cut(s)	553, 570
HpySE526I	ACGT	2 cut(s)	591, 644
Hsp92II	CATG	6 cut(s)	23, 169, 218, 556, 560, 736
Kpn2I	TCCGGA	2 cut(s)	13, 104
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	6 cut(s)	290, 311, 369, 636, 715, 792
LmnI	GCTCC	6 cut(s)	16, 16, 246, 302, 490, 683
Lsp1109I	GCAGC	6 cut(s)	37, 469, 715, 757, 959, 1025
LweI	GCATC	1 cut(s)	759
MaeI	CTAG	2 cut(s)	203, 680
MaeII	ACGT	2 cut(s)	591, 644
MaeIII	GTNAC	5 cut(s)	118, 232, 410, 628, 707
MalI	GATC	6 cut(s)	292, 313, 371, 638, 717, 794
MboI	GATC	6 cut(s)	290, 311, 369, 636, 715, 792
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	838
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	260, 906
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	250, 268
MnlI	CCTC	7 cut(s)	210, 498, 655, 789, 879, 905, 995
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	558
MroI	TCCGGA	2 cut(s)	13, 104
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	1 cut(s)	557
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1016
MspI	CCGG	7 cut(s)	14, 105, 210, 458, 501, 549, 839
MspR9I	CCNGG	4 cut(s)	210, 211, 458, 549
MwoI	GCNNNNNNNGC	2 cut(s)	553, 570
NciI	CCSGG	4 cut(s)	210, 211, 458, 549
NcoI	CCATGG	1 cut(s)	732
NdeII	GATC	6 cut(s)	290, 311, 369, 636, 715, 792
NlaIII	CATG	6 cut(s)	23, 169, 218, 556, 560, 736
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	3 cut(s)	118, 232, 707
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	2 cut(s)	556, 560
PaeI	GCATGC	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	38
PfeI	GAWTC	5 cut(s)	59, 101, 393, 504, 689
PflFI	GACNNNGTC	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	6 cut(s)	52, 484, 730, 772, 949, 1015
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	290
PsyI	GACNNNGTC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	1016
RsaI	GTAC	6 cut(s)	137, 255, 328, 383, 643, 916
RsaNI	GTAC	6 cut(s)	136, 254, 327, 382, 642, 915
RseI	CAYNNNNRTG	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	6 cut(s)	51, 483, 729, 771, 948, 1014
Sau3AI	GATC	6 cut(s)	290, 311, 369, 636, 715, 792
Sau96I	GGNCC	1 cut(s)	157
ScaI	AGTACT	1 cut(s)	383
ScrFI	CCNGG	4 cut(s)	210, 211, 458, 549
SduI	GDGCHC	1 cut(s)	838
SfaNI	GCATC	1 cut(s)	759
SfcI	CTRYAG	2 cut(s)	514, 999
SinI	GGWCC	1 cut(s)	157
SmaI	CCCGGG	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	3 cut(s)	91, 338, 851
SmoI	CTYRAG	3 cut(s)	91, 338, 851
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	2 cut(s)	260, 906
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	408
SspI	AATATT	1 cut(s)	1043
SspMI	CTAG	2 cut(s)	203, 680
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	4 cut(s)	208, 209, 456, 547
StyI	CCWWGG	4 cut(s)	574, 609, 679, 732
TaaI	ACNGT	3 cut(s)	140, 634, 763
TaiI	ACGT	2 cut(s)	594, 647
TasI	AATT	2 cut(s)	260, 906
TatI	WGTACW	3 cut(s)	135, 253, 381
TfiI	GAWTC	5 cut(s)	59, 101, 393, 504, 689
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	3 cut(s)	379, 603, 639
TseFI	GTSAC	3 cut(s)	118, 232, 707
TseI	GCWGC	6 cut(s)	50, 482, 728, 770, 947, 1013
Tsp45I	GTSAC	3 cut(s)	118, 232, 707
TspDTI	ATGAA	4 cut(s)	36, 51, 192, 450
TspGWI	ACGGA	5 cut(s)	251, 405, 440, 785, 824
TspMI	CCCGGG	1 cut(s)	209
TspRI	CASTG	3 cut(s)	379, 603, 639
Tth111I	GACNNNGTC	1 cut(s)	278
VneI	GTGCAC	1 cut(s)	834
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	2 cut(s)	556, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	739
XmaI	CCCGGG	1 cut(s)	209
XmaJI	CCTAGG	1 cut(s)	679
XspI	CTAG	2 cut(s)	203, 680
ZrmI	AGTACT	1 cut(s)	383
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.