Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010520.1

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Reverse (-)

31555 .. 33714

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010520.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgccgggtttctatgcaaagggtgagtatgacctcaatggttttgcagttgtaattgtgaacaaggaatcagtgattgatgataagaatattgtggctagagatgtcctcatcggcctaccatccagtggagttcattccaatggtttttctcttgtaagaagggttctagctcatagtgggttgtctctgaaggaccaattaccgggcatatctgttaccttaagtgaagctctgatggcccccacagtgcttgacataattagcaagggaggtgtgaagggggtagcccacatcacaggaggtgatttcaccgacaatatacctagagtatttccaaaaggcctaggagctgtcatctataatcattcatgggaagtccaagctgttttcaaatggatccaagaggttggaagagtagaagatgctgaaataagacaaacttttaatatggacgaggagaccaccaacctcgtcgagggattctttgtgcctcgtggtgaggactttgctgaagtttcttcttgttcacaagtcgatactcaatattgcagattgatcagagtgaaatcaccgggaagtgttgagatcttactaaagcgtgactttagcttggctggtttgcaagggcgttacccttgcttggctggttccgtaaccgttgtggtcacggtactacagtcggctcccgaggagactaggatcgaagcactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

238

Amino Acids

25.84

Weight (kDa)

5.16

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AclWI	GGATC	3 cut(s)	394, 407, 710
AcuI	CTGAAG	2 cut(s)	212, 534
AfaI	GTAC	1 cut(s)	675
AfiI	CCNNNNNNNGG	4 cut(s)	128, 205, 478, 643
AflII	CTTAAG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	394
AluBI	AGCT	5 cut(s)	173, 233, 353, 386, 612
AluI	AGCT	5 cut(s)	173, 233, 353, 386, 612
Alw26I	GTCTC	3 cut(s)	192, 455, 689
AlwI	GGATC	3 cut(s)	394, 407, 710
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	3 cut(s)	115, 240, 343
AspA2I	CCTAGG	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	196, 241
AsuC2I	CCSGG	3 cut(s)	6, 207, 576
AsuHPI	GGTGA	5 cut(s)	35, 304, 317, 512, 564
AvaI	CYCGRG	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	196
AvrII	CCTAGG	1 cut(s)	346
BaeI	ACNNNNGTAYC	2 cut(s)	665, 698
BamHI	GGATCC	1 cut(s)	399
BauI	CACGAG	1 cut(s)	495
BccI	CCATC	2 cut(s)	130, 232
BclI	TGATCA	1 cut(s)	558
BcnI	CCSGG	3 cut(s)	6, 207, 576
BcoDI	GTCTC	3 cut(s)	192, 455, 689
BfaI	CTAG	5 cut(s)	99, 170, 327, 347, 699
BfmI	CTRYAG	1 cut(s)	677
BfrI	CTTAAG	1 cut(s)	223
BglII	AGATCT	1 cut(s)	588
BlnI	CCTAGG	1 cut(s)	346
Bme1390I	CCNGG	3 cut(s)	6, 207, 576
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	196, 241
BmiI	GGNNCC	4 cut(s)	243, 401, 652, 687
BmrFI	CCNGG	3 cut(s)	6, 207, 576
BmsI	GCATC	1 cut(s)	415
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
BpuMI	CCSGG	3 cut(s)	6, 207, 576
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	346, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 205, 478, 643
Bse1I	ACTGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	346, 690
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	4 cut(s)	128, 205, 478, 643
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	473, 707
BshFI	GGCC	3 cut(s)	117, 242, 345
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	3 cut(s)	5, 206, 575
BslI	CCNNNNNNNGG	4 cut(s)	128, 205, 478, 643
BsmAI	GTCTC	3 cut(s)	192, 455, 689
BsnI	GGCC	3 cut(s)	117, 242, 345
Bso31I	GGTCTC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	689
Bsp143I	GATC	4 cut(s)	399, 558, 588, 702
BspANI	GGCC	3 cut(s)	117, 242, 345
BspLI	GGNNCC	4 cut(s)	243, 401, 652, 687
BspPI	GGATC	3 cut(s)	394, 407, 710
BspTI	CTTAAG	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	346, 690
BssMI	GATC	4 cut(s)	399, 558, 588, 702
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	495
Bst4CI	ACNGT	4 cut(s)	250, 661, 673, 681
Bst6I	CTCTTC	1 cut(s)	409
BstAFI	CTTAAG	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	122
BstKTI	GATC	4 cut(s)	402, 561, 591, 705
BstMAI	GTCTC	3 cut(s)	192, 455, 689
BstMBI	GATC	4 cut(s)	399, 558, 588, 702
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstSCI	CCNGG	3 cut(s)	4, 205, 574
BstSFI	CTRYAG	1 cut(s)	677
BstX2I	RGATCY	2 cut(s)	399, 588
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstYI	RGATCY	2 cut(s)	399, 588
BsuRI	GGCC	3 cut(s)	117, 242, 345
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	78, 133, 255
Cfr13I	GGNCC	2 cut(s)	196, 241
Csp6I	GTAC	1 cut(s)	674
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	1 cut(s)	372
CviQI	GTAC	1 cut(s)	674
DpnI	GATC	4 cut(s)	401, 560, 590, 704
DpnII	GATC	4 cut(s)	399, 558, 588, 702
Eam1104I	CTCTTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	212, 534
Eco88I	CYCGRG	1 cut(s)	689
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	1 cut(s)	375
FaiI	YATR	9 cut(s)	15, 30, 177, 212, 260, 323, 363, 373, 452
FalI	AAGNNNNNCTT	4 cut(s)	427, 459, 590, 622
FatI	CATG	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	558
FokI	GGATG	1 cut(s)	109
FspBI	CTAG	5 cut(s)	99, 170, 327, 347, 699
HaeIII	GGCC	3 cut(s)	117, 242, 345
HapII	CCGG	3 cut(s)	5, 206, 575
Hin1II	CATG	1 cut(s)	375
HinfI	GANTC	2 cut(s)	68, 483
HpaII	CCGG	3 cut(s)	5, 206, 575
HphI	GGTGA	5 cut(s)	35, 304, 317, 512, 564
Hpy166II	GTNNAC	2 cut(s)	61, 530
Hpy188I	TCNGA	3 cut(s)	192, 237, 563
Hpy188III	TCNNGA	1 cut(s)	689
Hpy8I	GTNNAC	2 cut(s)	61, 530
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	3 cut(s)	156, 187, 274
HpyCH4III	ACNGT	4 cut(s)	250, 661, 673, 681
HpyCH4V	TGCA	4 cut(s)	17, 47, 552, 625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	4 cut(s)	399, 558, 588, 702
LmnI	GCTCC	2 cut(s)	350, 691
LpnPI	CCDG	7 cut(s)	18, 139, 219, 285, 588, 603, 633
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	5 cut(s)	99, 170, 327, 347, 699
MaeIII	GTNAC	5 cut(s)	217, 602, 632, 655, 667
MalI	GATC	4 cut(s)	401, 560, 590, 704
MboI	GATC	4 cut(s)	399, 558, 588, 702
MboII	GAAGA	3 cut(s)	426, 434, 513
MflI	RGATCY	2 cut(s)	399, 588
MluCI	AATT	3 cut(s)	54, 200, 261
MmeI	TCCRAC	1 cut(s)	391
MseI	TTAA	2 cut(s)	224, 447
MslI	CAYNNNNRTG	1 cut(s)	141
MspCI	CTTAAG	1 cut(s)	223
MspI	CCGG	3 cut(s)	5, 206, 575
MspR9I	CCNGG	3 cut(s)	6, 207, 576
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	3 cut(s)	6, 207, 576
NdeII	GATC	4 cut(s)	399, 558, 588, 702
NlaIII	CATG	1 cut(s)	375
NlaIV	GGNNCC	4 cut(s)	243, 401, 652, 687
NmuCI	GTSAC	2 cut(s)	602, 667
PceI	AGGCCT	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	68, 483
PflMI	CCANNNNNTGG	1 cut(s)	128
PspN4I	GGNNCC	4 cut(s)	243, 401, 652, 687
PspPI	GGNCC	2 cut(s)	196, 241
PsrI	GAACNNNNNNTAC	2 cut(s)	150, 182
PsuI	RGATCY	2 cut(s)	399, 588
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	224, 447
Sau3AI	GATC	4 cut(s)	399, 558, 588, 702
Sau96I	GGNCC	2 cut(s)	196, 241
ScrFI	CCNGG	3 cut(s)	6, 207, 576
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	3 cut(s)	54, 200, 261
SseBI	AGGCCT	1 cut(s)	345
SspI	AATATT	2 cut(s)	91, 548
SspMI	CTAG	5 cut(s)	99, 170, 327, 347, 699
StuI	AGGCCT	1 cut(s)	345
StyD4I	CCNGG	3 cut(s)	4, 205, 574
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	4 cut(s)	250, 661, 673, 681
TaqI	TCGA	3 cut(s)	477, 537, 705
TasI	AATT	3 cut(s)	54, 200, 261
TfiI	GAWTC	2 cut(s)	68, 483
Tru1I	TTAA	2 cut(s)	224, 447
Tru9I	TTAA	2 cut(s)	224, 447
TscAI	CASTG	3 cut(s)	78, 133, 255
TseFI	GTSAC	2 cut(s)	602, 667
Tsp45I	GTSAC	2 cut(s)	602, 667
TspDTI	ATGAA	2 cut(s)	125, 360
TspGWI	ACGGA	1 cut(s)	643
TspRI	CASTG	3 cut(s)	78, 133, 255
Van91I	CCANNNNNTGG	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	196
XagI	CCTNNNNNAGG	1 cut(s)	476
XmaJI	CCTAGG	1 cut(s)	346
XspI	CTAG	5 cut(s)	99, 170, 327, 347, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.