Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000909

Physical Location & Seq

Genomic Coordinates Forward (+)

32377420 .. 32378650

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCTGGGTTTCTATGCAGAGGGTGAGTATGACCTCAATGGTTTTGTGGTTGGAATTGTGAAGAAGGAATTAGTGATTGATGGGAAAAACATTTTGGCTGGAGATGTCCTCATTGGCCTACCATCTAGTGGGGTTCATTCCAATGGTTTTCTCTTCCCTGTGGTTCTAACTCATGACATTGCACTGGTACATCTTTATAGGGTTCTAGCTCATAGTGGGTTGTCTCTCAAAGACCAACTACTGGATGCAGTTCATGATGTGTCTCAGCATATGGAAGAGCTTTTTGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

4.88

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55010 AT3G55010
fragaria_vesca	FvH4_1g23040 FvH4_1g23040 FvH4_1g23040
malus_domestica	MD08G1194300.v1.1 MD08G1194700.v1.1 MD15G1382400.v1.1
prunus_persica	Prupe.1G528600_v2.0.a1
pyrus_communis	pycom08g16730 pycom15g34250
rosa_chinensis	RchiOBHm_Chr2g0117621 RchiOBHm_Chr2g0117751 RchiOBHm_Chr5g0056581 RchiOBHm_Chr5g0059271 RchiOBHm_Chr7g0218451
rosa_laevigata	RLG00000002372 RLG00000018259 RLG00000018365 RLG00000031215 RLG00000032547 RLG00000035832
rosa_multiflora	Rmu_sc0001617.1_g000038 Rmu_sc0001992.1_g000024 Rmu_sc0006359.1_g000002 Rmu_sc0006959.1_g000003 Rmu_sc0010520.1_g000009
rosa_roxburghii	Rroxscaffold_1G00021190 Rroxscaffold_2G00126260 Rroxscaffold_2G00126310 Rroxscaffold_3G00240950 Rroxscaffold_4G00300060 Rroxscaffold_6G00402130
rosa_rugosa	Rorug02G0213600 Rorug02G0213700 Rorug05G0282200.1 Rorug05G0322100 Rorug05G0322200 Rorug07G0177200
rosa_samantha	Rh2AG269000 Rh2AG269800 Rh2CG270300 Rh2CG287800 Rh2DG276100 Rh2DG276600 Rh2DG277000 Rh2DG277100 Rh2DG277500 Rh2DG295300 Rh2DG295400 Rh2DG295500 Rh5AG282400 Rh5AG386700 Rh5BG397900 Rh5CG405900 Rh5CG421800 Rh6BG185700 Rh7AG318600 Rh7CG335500 Rh7CG335600 Rh7DG317600
rosa_wichuraiana	Rw2G021300 Rw3G020970 Rw5G036380 Rw7G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	128, 241
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	128, 241
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	2 cut(s)	209, 280
AluI	AGCT	2 cut(s)	209, 280
Alw26I	GTCTC	2 cut(s)	228, 267
AoxI	GGCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	35
BccI	CCATC	2 cut(s)	74, 130
BcoDI	GTCTC	2 cut(s)	228, 267
BfaI	CTAG	2 cut(s)	126, 206
BmsI	GCATC	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
BpmI	CTGGAG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 241
Bse1I	ACTGG	2 cut(s)	189, 246
Bse3DI	GCAATG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	128, 241
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	2 cut(s)	189, 246
BseYI	CCCAGC	1 cut(s)	4
BshFI	GGCC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	128, 241
BsmAI	GTCTC	2 cut(s)	228, 267
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	277
BspHI	TCATGA	2 cut(s)	172, 253
BspQI	GCTCTTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	189, 246
BssMI	GATC	1 cut(s)	286
Bst6I	CTCTTC	2 cut(s)	158, 270
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	228, 267
BstMBI	GATC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	182
CciI	TCATGA	2 cut(s)	172, 253
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	2 cut(s)	173, 254
CviJI	RGCY	4 cut(s)	98, 117, 209, 280
CviKI_1	RGCY	4 cut(s)	98, 117, 209, 280
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	2 cut(s)	158, 270
EarI	CTCTTC	2 cut(s)	158, 270
FaeI	CATG	2 cut(s)	176, 257
FaiI	YATR	8 cut(s)	15, 30, 174, 198, 213, 255, 270, 272
FatI	CATG	2 cut(s)	172, 253
FauNDI	CATATG	1 cut(s)	270
FokI	GGATG	1 cut(s)	257
FspBI	CTAG	2 cut(s)	126, 206
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	176, 257
HphI	GGTGA	1 cut(s)	35
Hpy188III	TCNNGA	2 cut(s)	173, 254
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	17, 182, 248
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	176, 257
Kzo9I	GATC	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	270
LpnPI	CCDG	4 cut(s)	84, 170, 171, 227
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	126, 206
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	73, 145, 287
MluCI	AATT	2 cut(s)	54, 68
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	3 cut(s)	13, 44, 119
MslI	CAYNNNNRTG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	176, 257
PagI	TCATGA	2 cut(s)	172, 253
PciSI	GCTCTTC	1 cut(s)	270
PflMI	CCANNNNNTGG	2 cut(s)	128, 241
PspFI	CCCAGC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	286
SetI	ASST	3 cut(s)	36, 211, 282
SfaNI	GCATC	1 cut(s)	235
SgeI	CNNG	9 cut(s)	17, 111, 138, 170, 185, 197, 218, 254, 266
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	54, 68
SspMI	CTAG	2 cut(s)	126, 206
TasI	AATT	2 cut(s)	54, 68
TscAI	CASTG	1 cut(s)	189
TspDTI	ATGAA	2 cut(s)	125, 242
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	2 cut(s)	128, 241
XspI	CTAG	2 cut(s)	126, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.