AT4G00155

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000756
Physical Location & Seq
Forward (+)
62235 .. 62567
333 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00155.1

Sequence Viewer

Length: 333 bp
CAAGCCGCATCATGGTGGCAACAAAAGCAGAAAACACGCAAGCGAGCTGGCAAGAATCCTATTAAATCATGGGATAAACTTAAGGAGAAGCTATGCAAAACTTTTTTACCTCCTCATTACACGAGTTCGGTGTCTAATCGTTTGAAGAATGTGAAACAAAGAGCCGGATTTGGGGATGATTTCACGAGGAATTGTCACGTTCATGTCAACAATTTCGTGGAGAAGCCTACTTATGATCGAGATTGTTACGTTCAAGACAACGACTTTGTCGATAAACCTGTCCATGTTATCTACGATGATGAGAATAATGATTTGTCTCCTATATGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

110

Amino Acids

12.96

Weight (kDa)

9.08

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 1 - 54 1.3e-08 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 12, 171
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 145, 254
AluBI AGCT 2 cut(s) 47, 91
AluI AGCT 2 cut(s) 47, 91
Alw26I GTCTC 1 cut(s) 321
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
BauI CACGAG 2 cut(s) 121, 184
BcoDI GTCTC 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 80
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmsI GCATC 1 cut(s) 17
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 171
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 12, 171
BseRI GAGGAG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 12, 171
BsmAI GTCTC 1 cut(s) 321
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 6
BspTI CTTAAG 1 cut(s) 80
BssMI GATC 1 cut(s) 235
BssSI CACGAG 2 cut(s) 121, 184
Bst2BI CACGAG 2 cut(s) 121, 184
BstAFI CTTAAG 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 41, 45, 49
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 3 cut(s) 41, 45, 49
CviAII CATG 4 cut(s) 12, 69, 203, 284
CviJI RGCY 5 cut(s) 5, 47, 91, 164, 226
CviKI_1 RGCY 5 cut(s) 5, 47, 91, 164, 226
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 329
FaeI CATG 4 cut(s) 15, 72, 206, 287
FatI CATG 4 cut(s) 11, 68, 202, 283
FauNDI CATATG 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 165
Hin1II CATG 4 cut(s) 15, 72, 206, 287
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 208
Hpy188III TCNNGA 3 cut(s) 184, 239, 254
Hpy8I GTNNAC 1 cut(s) 208
HpyCH4IV ACGT 2 cut(s) 198, 249
HpyCH4V TGCA 2 cut(s) 96, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 2 cut(s) 198, 249
Hsp92II CATG 4 cut(s) 15, 72, 206, 287
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 3 cut(s) 33, 178, 291
LweI GCATC 1 cut(s) 17
MaeII ACGT 2 cut(s) 198, 249
MaeIII GTNAC 2 cut(s) 194, 245
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 1 cut(s) 157
MluCI AATT 2 cut(s) 190, 211
MnlI CCTC 3 cut(s) 120, 123, 180
Mph1103I ATGCAT 1 cut(s) 329
MseI TTAA 2 cut(s) 63, 81
MslI CAYNNNNRTG 2 cut(s) 13, 201
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeI CATATG 1 cut(s) 329
NdeII GATC 1 cut(s) 235
NlaIII CATG 4 cut(s) 15, 72, 206, 287
NmuCI GTSAC 1 cut(s) 194
NsiI ATGCAT 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 1 cut(s) 55
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 266
RseI CAYNNNNRTG 2 cut(s) 13, 201
SaqAI TTAA 2 cut(s) 63, 81
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 235
SetI ASST 6 cut(s) 49, 93, 112, 201, 252, 280
SfaNI GCATC 1 cut(s) 17
SmiMI CAYNNNNRTG 2 cut(s) 13, 201
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 2 cut(s) 190, 211
SsiI CCGC 1 cut(s) 6
TaiI ACGT 2 cut(s) 201, 252
TaqI TCGA 2 cut(s) 238, 270
TasI AATT 2 cut(s) 190, 211
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 63, 81
Tru9I TTAA 2 cut(s) 63, 81
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 191
Tth111I GACNNNGTC 1 cut(s) 266
Vha464I CTTAAG 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.