transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ty3_capsid | PF19259 | 330 - 460 | 6.2e-09 | Ty3 transposon capsid-like protein |
| Retrotrans_gag | PF03732 | 343 - 431 | 1.3e-10 | Retrotransposon gag protein |
| RVP_2 | PF08284 | 590 - 686 | 1.1e-06 | Retroviral aspartyl protease |
| gag-asp_proteas | PF13975 | 596 - 685 | 4e-07 | gag-polyprotein putative aspartyl protease |
| RVT_1 | PF00078 | 835 - 905 | 5.7e-12 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1015 - 1109 | 1.3e-32 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1040 - 1139 | 3.3e-32 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 1242 - 1295 | 2.1e-18 | Integrase zinc binding domain |
| SH3_Tf2-1 | PF24626 | 1527 - 1590 | 1.9e-21 | Tf2-1-like, SH3 domain |
| Chromo | PF00385 | 1616 - 1660 | 4.2e-06 | Chromo (CHRromatin Organisation MOdifier) domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2335, 3661 |
| Acc36I | ACCTGC | 4 cut(s) | 2033, 2335, 3661, 3848 |
| Acc65I | GGTACC | 2 cut(s) | 377, 2397 |
| AccI | GTMKAC | 1 cut(s) | 347 |
| AccIII | TCCGGA | 1 cut(s) | 1832 |
| AciI | CCGC | 7 cut(s) | 38, 41, 308, 1091, 3063, 3269, 3456 |
| AcoI | YGGCCR | 3 cut(s) | 3741, 3821, 4240 |
| AcuI | CTGAAG | 1 cut(s) | 163 |
| AcvI | CACGTG | 1 cut(s) | 4753 |
| AdeI | CACNNNGTG | 1 cut(s) | 2063 |
| AfeI | AGCGCT | 1 cut(s) | 4970 |
| AflII | CTTAAG | 1 cut(s) | 1286 |
| AflIII | ACRYGT | 4 cut(s) | 1501, 1816, 2851, 4752 |
| AgeI | ACCGGT | 2 cut(s) | 286, 2018 |
| AjnI | CCWGG | 9 cut(s) | 66, 81, 645, 1240, 1370, 2522, 3473, 3904, 4432 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 129, 161 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 62, 94 |
| Alw21I | GWGCWC | 4 cut(s) | 60, 192, 1240, 2445 |
| Alw26I | GTCTC | 6 cut(s) | 1361, 2748, 2878, 3186, 3307, 4798 |
| Ama87I | CYCGRG | 4 cut(s) | 368, 544, 1356, 1607 |
| Aor13HI | TCCGGA | 1 cut(s) | 1832 |
| Aor51HI | AGCGCT | 1 cut(s) | 4970 |
| AsiGI | ACCGGT | 2 cut(s) | 286, 2018 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1435, 3894, 4538 |
| Asp718I | GGTACC | 2 cut(s) | 377, 2397 |
| AspA2I | CCTAGG | 2 cut(s) | 2845, 3227 |
| AspLEI | GCGC | 3 cut(s) | 207, 437, 4971 |
| AspS9I | GGNCC | 9 cut(s) | 17, 503, 528, 602, 1510, 1566, 2388, 4667, 4819 |
| AsuC2I | CCSGG | 7 cut(s) | 21, 1301, 1608, 1609, 3605, 3825, 4834 |
| AsuNHI | GCTAGC | 2 cut(s) | 173, 431 |
| AvaI | CYCGRG | 4 cut(s) | 368, 544, 1356, 1607 |
| AvaII | GGWCC | 2 cut(s) | 4667, 4819 |
| AvrII | CCTAGG | 2 cut(s) | 2845, 3227 |
| AxyI | CCTNAGG | 1 cut(s) | 1254 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1866, 1899 |
| BalI | TGGCCA | 1 cut(s) | 4242 |
| BamHI | GGATCC | 3 cut(s) | 356, 892, 952 |
| BanII | GRGCYC | 3 cut(s) | 60, 1240, 2445 |
| BbrPI | CACGTG | 1 cut(s) | 4753 |
| BbsI | GAAGAC | 4 cut(s) | 1946, 2420, 3078, 4147 |
| Bbv12I | GWGCWC | 4 cut(s) | 60, 192, 1240, 2445 |
| BbvCI | CCTCAGC | 2 cut(s) | 246, 1489 |
| BceAI | ACGGC | 1 cut(s) | 2533 |
| BciT130I | CCWGG | 9 cut(s) | 68, 83, 647, 1242, 1372, 2524, 3475, 3906, 4434 |
| BciVI | GTATCC | 3 cut(s) | 1133, 2957, 4851 |
| BclI | TGATCA | 6 cut(s) | 1638, 1734, 2280, 3334, 4002, 4954 |
| BcnI | CCSGG | 7 cut(s) | 21, 1301, 1608, 1609, 3605, 3825, 4834 |
| BcoDI | GTCTC | 6 cut(s) | 1361, 2748, 2878, 3186, 3307, 4798 |
| BfmI | CTRYAG | 8 cut(s) | 663, 1618, 2154, 2392, 2780, 2968, 3198, 4074 |
| BfoI | RGCGCY | 2 cut(s) | 438, 4972 |
| BfrI | CTTAAG | 1 cut(s) | 1286 |
| BfuAI | ACCTGC | 4 cut(s) | 2033, 2335, 3661, 3848 |
| BfuI | GTATCC | 3 cut(s) | 1133, 2957, 4851 |
| BglII | AGATCT | 1 cut(s) | 3735 |
| BlnI | CCTAGG | 2 cut(s) | 2845, 3227 |
| BlpI | GCTNAGC | 1 cut(s) | 978 |
| BmcAI | AGTACT | 2 cut(s) | 640, 4277 |
| Bme18I | GGWCC | 2 cut(s) | 4667, 4819 |
| BmeT110I | CYCGRG | 4 cut(s) | 368, 544, 1356, 1607 |
| BmgT120I | GGNCC | 9 cut(s) | 17, 503, 528, 602, 1510, 1566, 2388, 4667, 4819 |
| BmrI | ACTGGG | 1 cut(s) | 766 |
| BmsI | GCATC | 9 cut(s) | 97, 111, 149, 2910, 3062, 3139, 3454, 4110, 4747 |
| BmtI | GCTAGC | 2 cut(s) | 177, 435 |
| BmuI | ACTGGG | 1 cut(s) | 766 |
| BpiI | GAAGAC | 4 cut(s) | 1946, 2420, 3078, 4147 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1525, 1557 |
| BpmI | CTGGAG | 3 cut(s) | 2545, 3033, 3745 |
| Bpu10I | CCTNAGC | 3 cut(s) | 246, 1489, 2189 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 978 |
| BpuEI | CTTGAG | 4 cut(s) | 3062, 4176, 4300, 4484 |
| BpuMI | CCSGG | 7 cut(s) | 21, 1301, 1608, 1609, 3605, 3825, 4834 |
| Bsa29I | ATCGAT | 1 cut(s) | 1886 |
| BsaAI | YACGTR | 2 cut(s) | 4753, 4941 |
| BsaI | GGTCTC | 2 cut(s) | 1361, 4798 |
| BsaWI | WCCGGW | 4 cut(s) | 286, 955, 1832, 2018 |
| Bse118I | RCCGGY | 4 cut(s) | 286, 310, 525, 2018 |
| Bse1I | ACTGG | 6 cut(s) | 772, 2588, 2961, 3040, 3547, 3728 |
| Bse21I | CCTNAGG | 1 cut(s) | 1254 |
| Bse3DI | GCAATG | 3 cut(s) | 2214, 2997, 4044 |
| BseAI | TCCGGA | 1 cut(s) | 1832 |
| BseBI | CCWGG | 9 cut(s) | 68, 83, 647, 1242, 1372, 2524, 3475, 3906, 4434 |
| BseCI | ATCGAT | 1 cut(s) | 1886 |
| BseMI | GCAATG | 3 cut(s) | 2214, 2997, 4044 |
| BseNI | ACTGG | 6 cut(s) | 772, 2588, 2961, 3040, 3547, 3728 |
| BseRI | GAGGAG | 4 cut(s) | 1477, 1739, 4946, 4961 |
| BseYI | CCCAGC | 1 cut(s) | 4915 |
| BsgI | GTGCAG | 3 cut(s) | 1526, 2237, 2456 |
| BshTI | ACCGGT | 2 cut(s) | 286, 2018 |
| BshVI | ATCGAT | 1 cut(s) | 1886 |
| BsiHKAI | GWGCWC | 4 cut(s) | 60, 192, 1240, 2445 |
| BsiHKCI | CYCGRG | 4 cut(s) | 368, 544, 1356, 1607 |
| BslFI | GGGAC | 6 cut(s) | 227, 1430, 1641, 2967, 3743, 4625 |
| BsmAI | GTCTC | 6 cut(s) | 1361, 2748, 2878, 3186, 3307, 4798 |
| BsmFI | GGGAC | 6 cut(s) | 227, 1430, 1641, 2967, 3743, 4625 |
| BsmI | GAATGC | 2 cut(s) | 2903, 3834 |
| Bso31I | GGTCTC | 2 cut(s) | 1361, 4798 |
| BsoBI | CYCGRG | 4 cut(s) | 368, 544, 1356, 1607 |
| Bsp1286I | GDGCHC | 4 cut(s) | 60, 192, 1240, 2445 |
| Bsp13I | TCCGGA | 1 cut(s) | 1832 |
| Bsp1407I | TGTACA | 3 cut(s) | 1813, 3283, 3687 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 978 |
| Bsp19I | CCATGG | 2 cut(s) | 156, 438 |
| BspACI | CCGC | 7 cut(s) | 38, 41, 308, 1091, 3063, 3269, 3456 |
| BspDI | ATCGAT | 1 cut(s) | 1886 |
| BspEI | TCCGGA | 1 cut(s) | 1832 |
| BspHI | TCATGA | 3 cut(s) | 148, 585, 3090 |
| BspMAI | CTGCAG | 2 cut(s) | 667, 1622 |
| BspMI | ACCTGC | 4 cut(s) | 2033, 2335, 3661, 3848 |
| BspOI | GCTAGC | 2 cut(s) | 177, 435 |
| BspQI | GCTCTTC | 1 cut(s) | 1228 |
| BspTI | CTTAAG | 1 cut(s) | 1286 |
| BspTNI | GGTCTC | 2 cut(s) | 1361, 4798 |
| BsrDI | GCAATG | 3 cut(s) | 2214, 2997, 4044 |
| BsrFI | RCCGGY | 4 cut(s) | 286, 310, 525, 2018 |
| BsrGI | TGTACA | 3 cut(s) | 1813, 3283, 3687 |
| BsrI | ACTGG | 6 cut(s) | 772, 2588, 2961, 3040, 3547, 3728 |
| BssAI | RCCGGY | 4 cut(s) | 286, 310, 525, 2018 |
| BssT1I | CCWWGG | 6 cut(s) | 156, 438, 499, 2845, 3227, 4328 |
| Bst2UI | CCWGG | 9 cut(s) | 68, 83, 647, 1242, 1372, 2524, 3475, 3906, 4434 |
| Bst6I | CTCTTC | 7 cut(s) | 169, 388, 1228, 1526, 2491, 3477, 4625 |
| BstAFI | CTTAAG | 1 cut(s) | 1286 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1928 |
| BstAUI | TGTACA | 3 cut(s) | 1813, 3283, 3687 |
| BstBAI | YACGTR | 2 cut(s) | 4753, 4941 |
| BstDSI | CCRYGG | 2 cut(s) | 156, 438 |
| BstEII | GGTNACC | 1 cut(s) | 3191 |
| BstH2I | RGCGCY | 2 cut(s) | 438, 4972 |
| BstHHI | GCGC | 3 cut(s) | 207, 437, 4971 |
| BstMAI | GTCTC | 6 cut(s) | 1361, 2748, 2878, 3186, 3307, 4798 |
| BstNI | CCWGG | 9 cut(s) | 68, 83, 647, 1242, 1372, 2524, 3475, 3906, 4434 |
| BstPI | GGTNACC | 1 cut(s) | 3191 |
| BstSFI | CTRYAG | 8 cut(s) | 663, 1618, 2154, 2392, 2780, 2968, 3198, 4074 |
| BstV2I | GAAGAC | 4 cut(s) | 1946, 2420, 3078, 4147 |
| BstX2I | RGATCY | 6 cut(s) | 356, 577, 892, 952, 3735, 4147 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 500, 4238 |
| BstYI | RGATCY | 6 cut(s) | 356, 577, 892, 952, 3735, 4147 |
| Bsu15I | ATCGAT | 1 cut(s) | 1886 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1254 |
| BsuI | GTATCC | 3 cut(s) | 1133, 2957, 4851 |
| BsuTUI | ATCGAT | 1 cut(s) | 1886 |
| BtgI | CCRYGG | 2 cut(s) | 156, 438 |
| BtsI | GCAGTG | 4 cut(s) | 408, 4350, 4461, 4794 |
| BveI | ACCTGC | 4 cut(s) | 2033, 2335, 3661, 3848 |
| CciI | TCATGA | 3 cut(s) | 148, 585, 3090 |
| CfoI | GCGC | 3 cut(s) | 207, 437, 4971 |
| Cfr10I | RCCGGY | 4 cut(s) | 286, 310, 525, 2018 |
| Cfr13I | GGNCC | 9 cut(s) | 17, 503, 528, 602, 1510, 1566, 2388, 4667, 4819 |
| Cfr9I | CCCGGG | 1 cut(s) | 1607 |
| ClaI | ATCGAT | 1 cut(s) | 1886 |
| CseI | GACGC | 1 cut(s) | 4872 |
| CspAI | ACCGGT | 2 cut(s) | 286, 2018 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3374, 3409 |
| DraI | TTTAAA | 2 cut(s) | 1984, 3796 |
| DraIII | CACNNNGTG | 1 cut(s) | 2063 |
| EaeI | YGGCCR | 3 cut(s) | 3741, 3821, 4240 |
| Eam1104I | CTCTTC | 7 cut(s) | 169, 388, 1228, 1526, 2491, 3477, 4625 |
| EarI | CTCTTC | 7 cut(s) | 169, 388, 1228, 1526, 2491, 3477, 4625 |
| EciI | GGCGGA | 1 cut(s) | 3445 |
| Ecl136II | GAGCTC | 3 cut(s) | 58, 1238, 2443 |
| Eco130I | CCWWGG | 6 cut(s) | 156, 438, 499, 2845, 3227, 4328 |
| Eco147I | AGGCCT | 3 cut(s) | 1055, 1456, 3298 |
| Eco24I | GRGCYC | 3 cut(s) | 60, 1240, 2445 |
| Eco31I | GGTCTC | 2 cut(s) | 1361, 4798 |
| Eco32I | GATATC | 5 cut(s) | 1297, 2068, 2660, 3372, 3619 |
| Eco47I | GGWCC | 2 cut(s) | 4667, 4819 |
| Eco47III | AGCGCT | 1 cut(s) | 4970 |
| Eco53kI | GAGCTC | 3 cut(s) | 58, 1238, 2443 |
| Eco57I | CTGAAG | 1 cut(s) | 163 |
| Eco72I | CACGTG | 1 cut(s) | 4753 |
| Eco81I | CCTNAGG | 1 cut(s) | 1254 |
| Eco88I | CYCGRG | 4 cut(s) | 368, 544, 1356, 1607 |
| Eco91I | GGTNACC | 1 cut(s) | 3191 |
| EcoICRI | GAGCTC | 3 cut(s) | 58, 1238, 2443 |
| EcoO109I | RGGNCCY | 3 cut(s) | 602, 1510, 2388 |
| EcoO65I | GGTNACC | 1 cut(s) | 3191 |
| EcoRI | GAATTC | 2 cut(s) | 929, 1762 |
| EcoRII | CCWGG | 9 cut(s) | 66, 81, 645, 1240, 1370, 2522, 3473, 3904, 4432 |
| EcoRV | GATATC | 5 cut(s) | 1297, 2068, 2660, 3372, 3619 |
| EcoT14I | CCWWGG | 6 cut(s) | 156, 438, 499, 2845, 3227, 4328 |
| EcoT22I | ATGCAT | 4 cut(s) | 843, 1041, 2903, 3834 |
| EcoT38I | GRGCYC | 3 cut(s) | 60, 1240, 2445 |
| ErhI | CCWWGG | 6 cut(s) | 156, 438, 499, 2845, 3227, 4328 |
| FaqI | GGGAC | 6 cut(s) | 227, 1430, 1641, 2967, 3743, 4625 |
| FauI | CCCGC | 1 cut(s) | 1098 |
| FauNDI | CATATG | 1 cut(s) | 393 |
| FbaI | TGATCA | 6 cut(s) | 1638, 1734, 2280, 3334, 4002, 4954 |
| FblI | GTMKAC | 1 cut(s) | 347 |
| FriOI | GRGCYC | 3 cut(s) | 60, 1240, 2445 |
| GlaI | GCGC | 3 cut(s) | 206, 436, 4970 |
| GsaI | CCCAGC | 1 cut(s) | 4919 |
| GsuI | CTGGAG | 3 cut(s) | 2545, 3033, 3745 |
| HaeII | RGCGCY | 2 cut(s) | 438, 4972 |
| HgaI | GACGC | 1 cut(s) | 4872 |
| HhaI | GCGC | 3 cut(s) | 207, 437, 4971 |
| Hin6I | GCGC | 3 cut(s) | 205, 435, 4969 |
| HinP1I | GCGC | 3 cut(s) | 205, 435, 4969 |
| HincII | GTYRAC | 2 cut(s) | 3805, 4018 |
| HindII | GTYRAC | 2 cut(s) | 3805, 4018 |
| HindIII | AAGCTT | 4 cut(s) | 2639, 3216, 3939, 4986 |
| HpyCH4IV | ACGT | 4 cut(s) | 350, 653, 4752, 4940 |
| HpySE526I | ACGT | 4 cut(s) | 350, 653, 4752, 4940 |
| HspAI | GCGC | 3 cut(s) | 205, 435, 4969 |
| Kpn2I | TCCGGA | 1 cut(s) | 1832 |
| KpnI | GGTACC | 2 cut(s) | 381, 2401 |
| KroI | GCCGGC | 1 cut(s) | 525 |
| KroNI | GCCGGC | 1 cut(s) | 527 |
| Ksp22I | TGATCA | 6 cut(s) | 1638, 1734, 2280, 3334, 4002, 4954 |
| LguI | GCTCTTC | 1 cut(s) | 1228 |
| LmnI | GCTCC | 9 cut(s) | 773, 1243, 1726, 1835, 1963, 2440, 3170, 3524, 4270 |
| LweI | GCATC | 9 cut(s) | 97, 111, 149, 2910, 3062, 3139, 3454, 4110, 4747 |
| MaeII | ACGT | 4 cut(s) | 350, 653, 4752, 4940 |
| MfeI | CAATTG | 3 cut(s) | 1026, 1970, 4466 |
| MflI | RGATCY | 6 cut(s) | 356, 577, 892, 952, 3735, 4147 |
| MhlI | GDGCHC | 4 cut(s) | 60, 192, 1240, 2445 |
| MlsI | TGGCCA | 1 cut(s) | 4242 |
| MluNI | TGGCCA | 1 cut(s) | 4242 |
| MlyI | GAGTC | 6 cut(s) | 353, 2750, 3040, 3509, 4372, 4575 |
| MmeI | TCCRAC | 5 cut(s) | 319, 1102, 1485, 2909, 4164 |
| Mox20I | TGGCCA | 1 cut(s) | 4242 |
| Mph1103I | ATGCAT | 4 cut(s) | 843, 1041, 2903, 3834 |
| MroI | TCCGGA | 1 cut(s) | 1832 |
| MroNI | GCCGGC | 1 cut(s) | 525 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1435, 3894, 4538 |
| MscI | TGGCCA | 1 cut(s) | 4242 |
| Msp20I | TGGCCA | 1 cut(s) | 4242 |
| MspA1I | CMGCKG | 3 cut(s) | 211, 1493, 4070 |
| MspCI | CTTAAG | 1 cut(s) | 1286 |
| MunI | CAATTG | 3 cut(s) | 1026, 1970, 4466 |
| Mva1269I | GAATGC | 2 cut(s) | 2903, 3834 |
| MvaI | CCWGG | 9 cut(s) | 68, 83, 647, 1242, 1372, 2524, 3475, 3906, 4434 |
| NaeI | GCCGGC | 1 cut(s) | 527 |
| NciI | CCSGG | 7 cut(s) | 21, 1301, 1608, 1609, 3605, 3825, 4834 |
| NcoI | CCATGG | 2 cut(s) | 156, 438 |
| NdeI | CATATG | 1 cut(s) | 393 |
| NgoMIV | GCCGGC | 1 cut(s) | 525 |
| NheI | GCTAGC | 2 cut(s) | 173, 431 |
| NmuCI | GTSAC | 7 cut(s) | 1179, 1648, 2014, 2248, 2255, 3191, 4891 |
| NsiI | ATGCAT | 4 cut(s) | 843, 1041, 2903, 3834 |
| PaeR7I | CTCGAG | 1 cut(s) | 368 |
| PagI | TCATGA | 3 cut(s) | 148, 585, 3090 |
| PaqCI | CACCTGC | 2 cut(s) | 2335, 3661 |
| PasI | CCCWGGG | 1 cut(s) | 3905 |
| PceI | AGGCCT | 3 cut(s) | 1055, 1456, 3298 |
| PciI | ACATGT | 3 cut(s) | 1501, 1816, 2851 |
| PciSI | GCTCTTC | 1 cut(s) | 1228 |
| PctI | GAATGC | 2 cut(s) | 2903, 3834 |
| PdiI | GCCGGC | 1 cut(s) | 527 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1435, 3894, 4538 |
| PfoI | TCCNGGA | 1 cut(s) | 3473 |
| PinAI | ACCGGT | 2 cut(s) | 286, 2018 |
| PleI | GAGTC | 6 cut(s) | 352, 2749, 3040, 3508, 4372, 4574 |
| PmaCI | CACGTG | 1 cut(s) | 4753 |
| PmlI | CACGTG | 1 cut(s) | 4753 |
| PpsI | GAGTC | 6 cut(s) | 352, 2749, 3040, 3508, 4372, 4574 |
| Ppu21I | YACGTR | 2 cut(s) | 4753, 4941 |
| PscI | ACATGT | 3 cut(s) | 1501, 1816, 2851 |
| Psp124BI | GAGCTC | 3 cut(s) | 60, 1240, 2445 |
| Psp6I | CCWGG | 9 cut(s) | 66, 81, 645, 1240, 1370, 2522, 3473, 3904, 4432 |
| PspCI | CACGTG | 1 cut(s) | 4753 |
| PspEI | GGTNACC | 1 cut(s) | 3191 |
| PspFI | CCCAGC | 1 cut(s) | 4915 |
| PspGI | CCWGG | 9 cut(s) | 66, 81, 645, 1240, 1370, 2522, 3473, 3904, 4432 |
| PspPI | GGNCC | 9 cut(s) | 17, 503, 528, 602, 1510, 1566, 2388, 4667, 4819 |
| PstI | CTGCAG | 2 cut(s) | 667, 1622 |
| PsuI | RGATCY | 6 cut(s) | 356, 577, 892, 952, 3735, 4147 |
| PvuII | CAGCTG | 3 cut(s) | 211, 1493, 4070 |
| SacI | GAGCTC | 3 cut(s) | 60, 1240, 2445 |
| SapI | GCTCTTC | 1 cut(s) | 1228 |
| Sau96I | GGNCC | 9 cut(s) | 17, 503, 528, 602, 1510, 1566, 2388, 4667, 4819 |
| ScaI | AGTACT | 2 cut(s) | 640, 4277 |
| SchI | GAGTC | 6 cut(s) | 353, 2750, 3040, 3509, 4372, 4575 |
| SduI | GDGCHC | 4 cut(s) | 60, 192, 1240, 2445 |
| SfaNI | GCATC | 9 cut(s) | 97, 111, 149, 2910, 3062, 3139, 3454, 4110, 4747 |
| SfcI | CTRYAG | 8 cut(s) | 663, 1618, 2154, 2392, 2780, 2968, 3198, 4074 |
| Sfr274I | CTCGAG | 1 cut(s) | 368 |
| SinI | GGWCC | 2 cut(s) | 4667, 4819 |
| SlaI | CTCGAG | 1 cut(s) | 368 |
| SmaI | CCCGGG | 1 cut(s) | 1609 |
| SmiI | ATTTAAAT | 1 cut(s) | 1984 |
| SmlI | CTYRAG | 7 cut(s) | 11, 368, 1286, 3077, 4191, 4279, 4499 |
| SmoI | CTYRAG | 7 cut(s) | 11, 368, 1286, 3077, 4191, 4279, 4499 |
| SrfI | GCCCGGGC | 1 cut(s) | 1609 |
| SseBI | AGGCCT | 3 cut(s) | 1055, 1456, 3298 |
| SsiI | CCGC | 7 cut(s) | 38, 41, 308, 1091, 3063, 3269, 3456 |
| SspI | AATATT | 4 cut(s) | 2123, 3662, 3952, 4340 |
| SstI | GAGCTC | 3 cut(s) | 60, 1240, 2445 |
| StuI | AGGCCT | 3 cut(s) | 1055, 1456, 3298 |
| StyI | CCWWGG | 6 cut(s) | 156, 438, 499, 2845, 3227, 4328 |
| SwaI | ATTTAAAT | 1 cut(s) | 1984 |
| TaiI | ACGT | 4 cut(s) | 353, 656, 4755, 4943 |
| TaqI | TCGA | 7 cut(s) | 91, 265, 275, 369, 1886, 4439, 4657 |
| TatI | WGTACW | 9 cut(s) | 638, 1813, 2494, 2614, 3283, 3687, 4163, 4275, 4495 |
| TauI | GCSGC | 2 cut(s) | 43, 3065 |
| TseFI | GTSAC | 7 cut(s) | 1179, 1648, 2014, 2248, 2255, 3191, 4891 |
| Tsp45I | GTSAC | 7 cut(s) | 1179, 1648, 2014, 2248, 2255, 3191, 4891 |
| TspMI | CCCGGG | 1 cut(s) | 1607 |
| Vha464I | CTTAAG | 1 cut(s) | 1286 |
| VpaK11BI | GGWCC | 2 cut(s) | 4667, 4819 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 3437, 3939, 4367 |
| XhoI | CTCGAG | 1 cut(s) | 368 |
| XmaI | CCCGGG | 1 cut(s) | 1607 |
| XmaJI | CCTAGG | 2 cut(s) | 2845, 3227 |
| XmiI | GTMKAC | 1 cut(s) | 347 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1435, 3894, 4538 |
| ZrmI | AGTACT | 2 cut(s) | 640, 4277 |
| Zsp2I | ATGCAT | 4 cut(s) | 843, 1041, 2903, 3834 |