Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Forward (+)

14225360 .. 14226322

Gene Structure 963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20641.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAGCAGATGAGATTAGAATTTGCAAATTTCAGTGGTGGAGACCCGGTTGAGTGGTTGAATAAGGCTGAACAGTTTTTTGACTTTTATCAAGTACCTGAGGATAGGAAATTAGCCATAGGAACCATGCATTTGACAGAAAAGGCTTCTGACAGATGGTATATGTTTAAATCAGAGTTCCCTCAAACATGGCAAGGCCTCACAGATATGCTAATGCGAGAATTCAGTGGTCATACTGTGGTTGATTACCAGGCAGCTTTAGCTCGGATGTCTCAGCAGGGGAGTGTGGATAGCTACATGGAAGAGTTCACTAAACTTTCAAGGAGAGCTCCAGGGTTTTCACATCAGACTTTACTCTCATTTTTTTTGGGAGGTTTGAAAAGTGAGCTCAGATATATGGTTAAGGCATTAAAACCAAAATCTTTGTATGAAGCTTGTGAAATGGCTAAGATCTTTGAAGCTAAGCATAAGGGGCACAGCAAGGTGGTTACTCCAACTAGAGTTTTTGGATCCCAAAACTCTAGCATCATGTCTACAACAAGTGTTGGAGCTCAAAACATTAAGCCACAAGCAATTCAACCAAAAATGGGGCAAGCTGTTCCCACACAGGTTCTAAAGAGGCGTTTATCTGATGCTGAGTATCAGGAAAGGAGAGCTAAGAATCAATGTTTTTTCTGTGATGACACTTTTAGACCTGGTCACAACTGCAGAAAAGGGCAGGGTCAATTAATGGTGATTGAGATTTTACAAGACGAAGTGGAAGGTGTTGAACCAAATGTGATAACTGAGATTGGTAAAGTCACAACTGATGAAGGATTGCCAGATGAAGAAATTCAATTACAAATCATGGGCGGCCAAGACAATTATGACACCATGCAGGTTAAGGGAATTTTCAACAGTAAACAGGTGCATGTGCTCATGATACTGGAGCTTCACACAACTTCATCCATCCTTCACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

321

Amino Acids

36.5

Weight (kDa)

6.52

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ty3_capsid	PF19259	28 - 162	1.3e-08	Ty3 transposon capsid-like protein
Retrotrans_gag	PF03732	42 - 127	3.1e-11	Retrotransposon gag protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	868
AccI	GTMKAC	1 cut(s)	533
AciI	CCGC	1 cut(s)	852
AclWI	GGATC	2 cut(s)	504, 517
AcoI	YGGCCR	1 cut(s)	853
AcsI	RAATTY	5 cut(s)	20, 28, 221, 831, 888
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	8 cut(s)	61, 321, 379, 458, 578, 770, 836, 895
AjnI	CCWGG	3 cut(s)	249, 331, 694
Alw21I	GWGCWC	4 cut(s)	331, 390, 553, 918
Alw26I	GTCTC	2 cut(s)	36, 276
AlwI	GGATC	2 cut(s)	504, 517
AoxI	GGCC	2 cut(s)	196, 853
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	5 cut(s)	20, 28, 221, 831, 888
AseI	ATTAAT	1 cut(s)	728
Asp700I	GAANNNNTTC	1 cut(s)	831
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	745
AxyI	CCTNAGG	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	477
BamHI	GGATCC	1 cut(s)	509
BanII	GRGCYC	3 cut(s)	331, 390, 553
Bbv12I	GWGCWC	4 cut(s)	331, 390, 553, 918
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	2 cut(s)	150, 956
BciT130I	CCWGG	3 cut(s)	251, 333, 696
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	36, 276
BfaI	CTAG	2 cut(s)	498, 522
BfmI	CTRYAG	1 cut(s)	706
BfuAI	ACCTGC	1 cut(s)	868
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	2 cut(s)	255, 853
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	2 cut(s)	256, 854
Bme1390I	CCNGG	4 cut(s)	47, 251, 333, 696
BmiI	GGNNCC	2 cut(s)	124, 511
BmrFI	CCNGG	4 cut(s)	47, 251, 333, 696
BmsI	GCATC	2 cut(s)	534, 622
BpmI	CTGGAG	2 cut(s)	315, 947
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	1 cut(s)	930
Bse21I	CCTNAGG	1 cut(s)	99
BseBI	CCWGG	3 cut(s)	251, 333, 696
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	3 cut(s)	273, 944, 948
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMII	CTCAG	5 cut(s)	90, 287, 403, 627, 777
BseNI	ACTGG	1 cut(s)	930
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	266
BshFI	GGCC	2 cut(s)	198, 855
BsiHKAI	GWGCWC	4 cut(s)	331, 390, 553, 918
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	2 cut(s)	36, 276
BsnI	GGCC	2 cut(s)	198, 855
Bso31I	GGTCTC	1 cut(s)	36
Bsp1286I	GDGCHC	5 cut(s)	331, 390, 477, 553, 918
Bsp143I	GATC	2 cut(s)	450, 509
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	1 cut(s)	852
BspANI	GGCC	2 cut(s)	198, 855
BspCNI	CTCAG	5 cut(s)	91, 286, 402, 628, 778
BspHI	TCATGA	1 cut(s)	918
BspLI	GGNNCC	2 cut(s)	124, 511
BspMAI	CTGCAG	1 cut(s)	710
BspMI	ACCTGC	1 cut(s)	868
BspPI	GGATC	2 cut(s)	504, 517
BspTNI	GGTCTC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	930
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	2 cut(s)	450, 509
Bst2UI	CCWGG	3 cut(s)	251, 333, 696
Bst4CI	ACNGT	3 cut(s)	75, 238, 899
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	8 cut(s)	99, 273, 389, 447, 462, 636, 657, 786
BstF5I	GGATG	3 cut(s)	273, 944, 948
BstKTI	GATC	2 cut(s)	453, 512
BstMAI	GTCTC	2 cut(s)	36, 276
BstMBI	GATC	2 cut(s)	450, 509
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 472
BstNI	CCWGG	3 cut(s)	251, 333, 696
BstNSI	RCATGY	1 cut(s)	914
BstSCI	CCNGG	4 cut(s)	45, 249, 331, 694
BstSFI	CTRYAG	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	2 cut(s)	450, 509
BstYI	RGATCY	2 cut(s)	450, 509
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	198, 855
BtsCI	GGATG	3 cut(s)	273, 944, 948
BtsIMutI	CAGTG	2 cut(s)	40, 232
BveI	ACCTGC	1 cut(s)	868
Cac8I	GCNNGC	1 cut(s)	594
CciI	TCATGA	1 cut(s)	918
CsiI	ACCWGGT	1 cut(s)	694
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	8 cut(s)	127, 189, 298, 529, 847, 874, 911, 919
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	8 cut(s)	99, 273, 389, 447, 462, 636, 657, 786
DpnI	GATC	2 cut(s)	452, 511
DpnII	GATC	2 cut(s)	450, 509
DraI	TTTAAA	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	853
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	3 cut(s)	329, 388, 551
Eco147I	AGGCCT	1 cut(s)	198
Eco24I	GRGCYC	3 cut(s)	331, 390, 553
Eco31I	GGTCTC	1 cut(s)	36
Eco53kI	GAGCTC	3 cut(s)	329, 388, 551
Eco81I	CCTNAGG	1 cut(s)	99
EcoICRI	GAGCTC	3 cut(s)	329, 388, 551
EcoRI	GAATTC	1 cut(s)	221
EcoRII	CCWGG	3 cut(s)	249, 331, 694
EcoT22I	ATGCAT	1 cut(s)	132
EcoT38I	GRGCYC	3 cut(s)	331, 390, 553
FaeI	CATG	8 cut(s)	130, 192, 301, 532, 850, 877, 914, 922
FatI	CATG	8 cut(s)	126, 188, 297, 528, 846, 873, 910, 918
FblI	GTMKAC	1 cut(s)	533
Fnu4HI	GCNGC	2 cut(s)	255, 853
FokI	GGATG	3 cut(s)	280, 931, 935
FriOI	GRGCYC	3 cut(s)	331, 390, 553
Fsp4HI	GCNGC	2 cut(s)	255, 853
FspBI	CTAG	2 cut(s)	498, 522
GluI	GCNGC	2 cut(s)	255, 853
GsuI	CTGGAG	2 cut(s)	315, 947
HaeIII	GGCC	2 cut(s)	198, 855
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	8 cut(s)	130, 192, 301, 532, 850, 877, 914, 922
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	1 cut(s)	661
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	3 cut(s)	309, 534, 902
Hpy188I	TCNGA	6 cut(s)	151, 175, 267, 348, 392, 631
Hpy188III	TCNNGA	2 cut(s)	644, 919
Hpy8I	GTNNAC	3 cut(s)	309, 534, 902
HpyAV	CCTTC	3 cut(s)	755, 806, 962
HpyCH4III	ACNGT	3 cut(s)	75, 238, 899
HpyCH4V	TGCA	5 cut(s)	26, 130, 708, 877, 910
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 472
HpyF3I	CTNAG	8 cut(s)	99, 273, 389, 447, 462, 636, 657, 786
Hsp92II	CATG	8 cut(s)	130, 192, 301, 532, 850, 877, 914, 922
Kzo9I	GATC	2 cut(s)	450, 509
LmnI	GCTCC	3 cut(s)	334, 548, 928
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	2 cut(s)	534, 622
MabI	ACCWGGT	1 cut(s)	694
MaeI	CTAG	2 cut(s)	498, 522
MaeIII	GTNAC	3 cut(s)	487, 698, 799
MalI	GATC	2 cut(s)	452, 511
MboI	GATC	2 cut(s)	450, 509
MboII	GAAGA	2 cut(s)	314, 839
MflI	RGATCY	2 cut(s)	450, 509
MhlI	GDGCHC	5 cut(s)	331, 390, 477, 553, 918
MmeI	TCCRAC	2 cut(s)	518, 526
MnlI	CCTC	5 cut(s)	94, 192, 209, 365, 612
Mph1103I	ATGCAT	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	831
MseI	TTAA	7 cut(s)	168, 402, 410, 561, 728, 882, 961
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	4 cut(s)	47, 251, 333, 696
MvaI	CCWGG	3 cut(s)	251, 333, 696
MwoI	GCNNNNNNNGC	2 cut(s)	260, 472
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	450, 509
NlaIII	CATG	8 cut(s)	130, 192, 301, 532, 850, 877, 914, 922
NlaIV	GGNNCC	2 cut(s)	124, 511
NmuCI	GTSAC	2 cut(s)	698, 799
NsiI	ATGCAT	1 cut(s)	132
NspI	RCATGY	1 cut(s)	914
PagI	TCATGA	1 cut(s)	918
PceI	AGGCCT	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	1 cut(s)	661
PflFI	GACNNNGTC	1 cut(s)	696
PkrI	GCNGC	2 cut(s)	256, 854
PshBI	ATTAAT	1 cut(s)	728
Psp124BI	GAGCTC	3 cut(s)	331, 390, 553
Psp6I	CCWGG	3 cut(s)	249, 331, 694
PspGI	CCWGG	3 cut(s)	249, 331, 694
PspN4I	GGNNCC	2 cut(s)	124, 511
PstI	CTGCAG	1 cut(s)	710
PsuI	RGATCY	2 cut(s)	450, 509
PsyI	GACNNNGTC	1 cut(s)	696
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	3 cut(s)	331, 390, 553
SaqAI	TTAA	7 cut(s)	168, 402, 410, 561, 728, 882, 961
SatI	GCNGC	2 cut(s)	255, 853
Sau3AI	GATC	2 cut(s)	450, 509
ScrFI	CCNGG	4 cut(s)	47, 251, 333, 696
SduI	GDGCHC	5 cut(s)	331, 390, 477, 553, 918
SexAI	ACCWGGT	1 cut(s)	694
SfaNI	GCATC	2 cut(s)	534, 622
SfcI	CTRYAG	1 cut(s)	706
SmiMI	CAYNNNNRTG	1 cut(s)	206
SseBI	AGGCCT	1 cut(s)	198
SsiI	CCGC	1 cut(s)	852
SspMI	CTAG	2 cut(s)	498, 522
SstI	GAGCTC	3 cut(s)	331, 390, 553
StuI	AGGCCT	1 cut(s)	198
StyD4I	CCNGG	4 cut(s)	45, 249, 331, 694
TaaI	ACNGT	3 cut(s)	75, 238, 899
TauI	GCSGC	1 cut(s)	855
TfiI	GAWTC	1 cut(s)	661
Tru1I	TTAA	7 cut(s)	168, 402, 410, 561, 728, 882, 961
Tru9I	TTAA	7 cut(s)	168, 402, 410, 561, 728, 882, 961
TscAI	CASTG	2 cut(s)	40, 232
TseFI	GTSAC	2 cut(s)	698, 799
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	2 cut(s)	698, 799
TspDTI	ATGAA	5 cut(s)	17, 444, 825, 840, 933
TspRI	CASTG	2 cut(s)	40, 232
Tth111I	GACNNNGTC	1 cut(s)	696
VspI	ATTAAT	1 cut(s)	728
XapI	RAATTY	5 cut(s)	20, 28, 221, 831, 888
XceI	RCATGY	1 cut(s)	914
XmiI	GTMKAC	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	2 cut(s)	498, 522
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.