transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 139 - 299 | 2.6e-42 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 361 - 455 | 8.8e-32 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 386 - 485 | 3.7e-31 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 574 - 626 | 2.6e-16 | Integrase zinc binding domain |
| rve | PF00665 | 651 - 742 | 2.2e-06 | Integrase core domain |
| SH3_Tf2-1 | PF24626 | 859 - 922 | 1.9e-25 | Tf2-1-like, SH3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1568, 1686 |
| Acc36I | ACCTGC | 2 cut(s) | 1976, 2614 |
| AciI | CCGC | 6 cut(s) | 800, 1333, 1764, 2214, 2225, 2718 |
| AclWI | GGATC | 5 cut(s) | 914, 927, 2138, 2151, 2463 |
| AcoI | YGGCCR | 2 cut(s) | 886, 1672 |
| AcuI | CTGAAG | 1 cut(s) | 2837 |
| AcvI | CACGTG | 1 cut(s) | 2937 |
| AdeI | CACNNNGTG | 1 cut(s) | 2740 |
| AfaI | GTAC | 8 cut(s) | 349, 1391, 1472, 1497, 2212, 2342, 2437, 2463 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 610, 1539, 2337 |
| AflII | CTTAAG | 2 cut(s) | 968, 2048 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2235 |
| AjnI | CCWGG | 4 cut(s) | 274, 627, 1819, 2428 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 719, 751 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2902, 2934 |
| Alw21I | GWGCWC | 1 cut(s) | 2736 |
| Alw44I | GTGCAC | 1 cut(s) | 2732 |
| AlwI | GGATC | 5 cut(s) | 914, 927, 2138, 2151, 2463 |
| AoxI | GGCC | 9 cut(s) | 631, 886, 1228, 1334, 1672, 1817, 1969, 2328, 2520 |
| ApaLI | GTGCAC | 1 cut(s) | 2732 |
| ApeKI | GCWGC | 7 cut(s) | 77, 143, 281, 432, 1121, 1678, 2599 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2302, 2334 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2174, 2955 |
| AspLEI | GCGC | 1 cut(s) | 1211 |
| AspS9I | GGNCC | 5 cut(s) | 459, 631, 1228, 2328, 2663 |
| AsuC2I | CCSGG | 1 cut(s) | 1902 |
| AsuHPI | GGTGA | 8 cut(s) | 79, 617, 1532, 1849, 1887, 2588, 2686, 2902 |
| AvaII | GGWCC | 2 cut(s) | 459, 2663 |
| AxyI | CCTNAGG | 1 cut(s) | 2886 |
| BaeGI | GKGCMC | 2 cut(s) | 1640, 2736 |
| BalI | TGGCCA | 2 cut(s) | 888, 1674 |
| BamHI | GGATCC | 2 cut(s) | 919, 2143 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 771, 803 |
| BbrPI | CACGTG | 1 cut(s) | 2937 |
| BbsI | GAAGAC | 1 cut(s) | 1847 |
| Bbv12I | GWGCWC | 1 cut(s) | 2736 |
| BbvI | GCAGC | 7 cut(s) | 64, 130, 268, 444, 1108, 1665, 2611 |
| BccI | CCATC | 9 cut(s) | 422, 582, 1239, 1589, 1612, 1961, 2228, 2229, 2889 |
| BceAI | ACGGC | 3 cut(s) | 627, 1116, 1628 |
| BciT130I | CCWGG | 4 cut(s) | 276, 629, 1821, 2430 |
| BcnI | CCSGG | 1 cut(s) | 1902 |
| BfaI | CTAG | 5 cut(s) | 51, 1274, 1548, 2459, 2808 |
| BfrI | CTTAAG | 2 cut(s) | 968, 2048 |
| BfuAI | ACCTGC | 2 cut(s) | 1976, 2614 |
| BisI | GCNGC | 8 cut(s) | 78, 144, 282, 433, 1122, 1334, 1679, 2600 |
| BlsI | GCNGC | 8 cut(s) | 79, 145, 283, 434, 1123, 1335, 1680, 2601 |
| BmcAI | AGTACT | 3 cut(s) | 1391, 2437, 2463 |
| Bme1390I | CCNGG | 5 cut(s) | 276, 629, 1821, 1902, 2430 |
| Bme18I | GGWCC | 2 cut(s) | 459, 2663 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2235 |
| BmgT120I | GGNCC | 5 cut(s) | 459, 631, 1228, 2328, 2663 |
| BmiI | GGNNCC | 6 cut(s) | 461, 865, 921, 1263, 2145, 2838 |
| BmrFI | CCNGG | 5 cut(s) | 276, 629, 1821, 1902, 2430 |
| BmrI | ACTGGG | 2 cut(s) | 1355, 2732 |
| BmsI | GCATC | 6 cut(s) | 1177, 1279, 1492, 1699, 2106, 2920 |
| BmuI | ACTGGG | 2 cut(s) | 1355, 2732 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2614 |
| BpiI | GAAGAC | 1 cut(s) | 1847 |
| BpmI | CTGGAG | 2 cut(s) | 297, 1122 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2517, 2844 |
| BpuEI | CTTGAG | 5 cut(s) | 1046, 1109, 1206, 2394, 2480 |
| BpuMI | CCSGG | 1 cut(s) | 1902 |
| BsaAI | YACGTR | 1 cut(s) | 2937 |
| BsaBI | GATNNNNATC | 2 cut(s) | 171, 2142 |
| BsaI | GGTCTC | 3 cut(s) | 292, 668, 1549 |
| BsaJI | CCNNGG | 5 cut(s) | 242, 628, 883, 2324, 2428 |
| BsaWI | WCCGGW | 1 cut(s) | 1193 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2788, 2818 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 610, 1539, 2337 |
| Bse1I | ACTGG | 7 cut(s) | 387, 688, 953, 1139, 1350, 2312, 2738 |
| Bse21I | CCTNAGG | 1 cut(s) | 2886 |
| Bse3DI | GCAATG | 3 cut(s) | 1035, 1236, 2040 |
| Bse8I | GATNNNNATC | 2 cut(s) | 171, 2142 |
| BseBI | CCWGG | 4 cut(s) | 276, 629, 1821, 2430 |
| BseDI | CCNNGG | 5 cut(s) | 242, 628, 883, 2324, 2428 |
| BseGI | GGATG | 6 cut(s) | 172, 447, 514, 1231, 2121, 2221 |
| BseJI | GATNNNNATC | 2 cut(s) | 171, 2142 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 610, 1539, 2337 |
| BseMI | GCAATG | 3 cut(s) | 1035, 1236, 2040 |
| BseMII | CTCAG | 7 cut(s) | 2112, 2170, 2456, 2477, 2531, 2793, 2877 |
| BseNI | ACTGG | 7 cut(s) | 387, 688, 953, 1139, 1350, 2312, 2738 |
| BseRI | GAGGAG | 5 cut(s) | 228, 231, 1819, 2394, 2397 |
| BseSI | GKGCMC | 2 cut(s) | 1640, 2736 |
| BseXI | GCAGC | 7 cut(s) | 64, 130, 268, 444, 1108, 1665, 2611 |
| BsgI | GTGCAG | 3 cut(s) | 2004, 2642, 2967 |
| BshFI | GGCC | 9 cut(s) | 633, 888, 1230, 1336, 1674, 1819, 1971, 2330, 2522 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2736 |
| BsiSI | CCGG | 2 cut(s) | 1194, 1901 |
| BslFI | GGGAC | 4 cut(s) | 243, 445, 1362, 2411 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 610, 1539, 2337 |
| BsmFI | GGGAC | 4 cut(s) | 243, 445, 1362, 2411 |
| BsmI | GAATGC | 3 cut(s) | 676, 1768, 2252 |
| BsnI | GGCC | 9 cut(s) | 633, 888, 1230, 1336, 1674, 1819, 1971, 2330, 2522 |
| Bso31I | GGTCTC | 3 cut(s) | 292, 668, 1549 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1640, 2736 |
| Bsp1407I | TGTACA | 2 cut(s) | 347, 1470 |
| Bsp143I | GATC | 4 cut(s) | 715, 919, 2143, 2455 |
| BspACI | CCGC | 6 cut(s) | 800, 1333, 1764, 2214, 2225, 2718 |
| BspANI | GGCC | 9 cut(s) | 633, 888, 1230, 1336, 1674, 1819, 1971, 2330, 2522 |
| BspCNI | CTCAG | 7 cut(s) | 2113, 2169, 2457, 2478, 2530, 2792, 2878 |
| BspLI | GGNNCC | 6 cut(s) | 461, 865, 921, 1263, 2145, 2838 |
| BspMI | ACCTGC | 2 cut(s) | 1976, 2614 |
| BspPI | GGATC | 5 cut(s) | 914, 927, 2138, 2151, 2463 |
| BspQI | GCTCTTC | 1 cut(s) | 2289 |
| BspTI | CTTAAG | 2 cut(s) | 968, 2048 |
| BspTNI | GGTCTC | 3 cut(s) | 292, 668, 1549 |
| BsrDI | GCAATG | 3 cut(s) | 1035, 1236, 2040 |
| BsrGI | TGTACA | 2 cut(s) | 347, 1470 |
| BsrI | ACTGG | 7 cut(s) | 387, 688, 953, 1139, 1350, 2312, 2738 |
| BssECI | CCNNGG | 5 cut(s) | 242, 628, 883, 2324, 2428 |
| BssMI | GATC | 4 cut(s) | 715, 919, 2143, 2455 |
| BssT1I | CCWWGG | 2 cut(s) | 883, 2324 |
| Bst2UI | CCWGG | 4 cut(s) | 276, 629, 1821, 2430 |
| Bst4CI | ACNGT | 4 cut(s) | 129, 478, 2085, 2271 |
| Bst6I | CTCTTC | 4 cut(s) | 403, 1104, 2289, 2760 |
| BstAFI | CTTAAG | 2 cut(s) | 968, 2048 |
| BstAUI | TGTACA | 2 cut(s) | 347, 1470 |
| BstBAI | YACGTR | 1 cut(s) | 2937 |
| BstC8I | GCNNGC | 5 cut(s) | 1305, 1676, 1766, 2492, 2859 |
| BstEII | GGTNACC | 1 cut(s) | 569 |
| BstF5I | GGATG | 6 cut(s) | 172, 447, 514, 1231, 2121, 2221 |
| BstHHI | GCGC | 1 cut(s) | 1211 |
| BstKTI | GATC | 4 cut(s) | 718, 922, 2146, 2458 |
| BstMBI | GATC | 4 cut(s) | 715, 919, 2143, 2455 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 140, 1100 |
| BstNI | CCWGG | 4 cut(s) | 276, 629, 1821, 2430 |
| BstNSI | RCATGY | 1 cut(s) | 1060 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2614 |
| BstPI | GGTNACC | 1 cut(s) | 569 |
| BstSCI | CCNGG | 5 cut(s) | 274, 627, 1819, 1900, 2428 |
| BstSLI | GKGCMC | 2 cut(s) | 1640, 2736 |
| BstV1I | GCAGC | 7 cut(s) | 64, 130, 268, 444, 1108, 1665, 2611 |
| BstV2I | GAAGAC | 1 cut(s) | 1847 |
| BstX2I | RGATCY | 3 cut(s) | 919, 2143, 2455 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 874 |
| BstYI | RGATCY | 3 cut(s) | 919, 2143, 2455 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2886 |
| BsuRI | GGCC | 9 cut(s) | 633, 888, 1230, 1336, 1674, 1819, 1971, 2330, 2522 |
| BtsCI | GGATG | 6 cut(s) | 172, 447, 514, 1231, 2121, 2221 |
| BtsI | GCAGTG | 3 cut(s) | 921, 1314, 2061 |
| BtsIMutI | CAGTG | 9 cut(s) | 921, 1314, 2061, 2140, 2164, 2305, 2553, 2625, 2745 |
| BveI | ACCTGC | 2 cut(s) | 1976, 2614 |
| Cac8I | GCNNGC | 5 cut(s) | 1305, 1676, 1766, 2492, 2859 |
| CfoI | GCGC | 1 cut(s) | 1211 |
| Cfr13I | GGNCC | 5 cut(s) | 459, 631, 1228, 2328, 2663 |
| Csp6I | GTAC | 8 cut(s) | 348, 1390, 1471, 1496, 2211, 2341, 2436, 2462 |
| CviQI | GTAC | 8 cut(s) | 348, 1390, 1471, 1496, 2211, 2341, 2436, 2462 |
| DpnI | GATC | 4 cut(s) | 717, 921, 2145, 2457 |
| DpnII | GATC | 4 cut(s) | 715, 919, 2143, 2455 |
| DraI | TTTAAA | 1 cut(s) | 1398 |
| DraIII | CACNNNGTG | 1 cut(s) | 2740 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2235 |
| EaeI | YGGCCR | 2 cut(s) | 886, 1672 |
| Eam1104I | CTCTTC | 4 cut(s) | 403, 1104, 2289, 2760 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2235 |
| EarI | CTCTTC | 4 cut(s) | 403, 1104, 2289, 2760 |
| Eco130I | CCWWGG | 2 cut(s) | 883, 2324 |
| Eco31I | GGTCTC | 3 cut(s) | 292, 668, 1549 |
| Eco47I | GGWCC | 2 cut(s) | 459, 2663 |
| Eco57I | CTGAAG | 1 cut(s) | 2837 |
| Eco72I | CACGTG | 1 cut(s) | 2937 |
| Eco81I | CCTNAGG | 1 cut(s) | 2886 |
| Eco91I | GGTNACC | 1 cut(s) | 569 |
| EcoO109I | RGGNCCY | 1 cut(s) | 459 |
| EcoO65I | GGTNACC | 1 cut(s) | 569 |
| EcoRI | GAATTC | 2 cut(s) | 1528, 2397 |
| EcoRII | CCWGG | 4 cut(s) | 274, 627, 1819, 2428 |
| EcoT14I | CCWWGG | 2 cut(s) | 883, 2324 |
| EcoT22I | ATGCAT | 1 cut(s) | 591 |
| ErhI | CCWWGG | 2 cut(s) | 883, 2324 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 98, 130, 1058, 1090 |
| FaqI | GGGAC | 4 cut(s) | 243, 445, 1362, 2411 |
| FauI | CCCGC | 2 cut(s) | 1757, 2725 |
| Fnu4HI | GCNGC | 8 cut(s) | 78, 144, 282, 433, 1122, 1334, 1679, 2600 |
| FokI | GGATG | 6 cut(s) | 159, 454, 521, 1218, 2128, 2208 |
| Fsp4HI | GCNGC | 8 cut(s) | 78, 144, 282, 433, 1122, 1334, 1679, 2600 |
| FspBI | CTAG | 5 cut(s) | 51, 1274, 1548, 2459, 2808 |
| GlaI | GCGC | 1 cut(s) | 1210 |
| GluI | GCNGC | 8 cut(s) | 78, 144, 282, 433, 1122, 1334, 1679, 2600 |
| GsuI | CTGGAG | 2 cut(s) | 297, 1122 |
| HaeIII | GGCC | 9 cut(s) | 633, 888, 1230, 1336, 1674, 1819, 1971, 2330, 2522 |
| HapII | CCGG | 2 cut(s) | 1194, 1901 |
| HhaI | GCGC | 1 cut(s) | 1211 |
| Hin6I | GCGC | 1 cut(s) | 1209 |
| HinP1I | GCGC | 1 cut(s) | 1209 |
| HincII | GTYRAC | 1 cut(s) | 1871 |
| HindII | GTYRAC | 1 cut(s) | 1871 |
| HinfI | GANTC | 8 cut(s) | 580, 1032, 1135, 1362, 1384, 1407, 2816, 2902 |
| HpaII | CCGG | 2 cut(s) | 1194, 1901 |
| HphI | GGTGA | 8 cut(s) | 79, 617, 1532, 1849, 1887, 2588, 2686, 2902 |
| Hpy166II | GTNNAC | 8 cut(s) | 541, 604, 1471, 1871, 1879, 1907, 2536, 2734 |
| Hpy188I | TCNGA | 6 cut(s) | 579, 901, 1404, 1855, 2923, 2961 |
| Hpy8I | GTNNAC | 8 cut(s) | 541, 604, 1471, 1871, 1879, 1907, 2536, 2734 |
| HpyAV | CCTTC | 9 cut(s) | 100, 687, 694, 1060, 1616, 1982, 2524, 2799, 2866 |
| HpyCH4III | ACNGT | 4 cut(s) | 129, 478, 2085, 2271 |
| HpyCH4IV | ACGT | 2 cut(s) | 1017, 2936 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 140, 1100 |
| HpySE526I | ACGT | 2 cut(s) | 1017, 2936 |
| HspAI | GCGC | 1 cut(s) | 1209 |
| Kzo9I | GATC | 4 cut(s) | 715, 919, 2143, 2455 |
| LguI | GCTCTTC | 1 cut(s) | 2289 |
| LmnI | GCTCC | 4 cut(s) | 278, 289, 863, 1267 |
| Lsp1109I | GCAGC | 7 cut(s) | 64, 130, 268, 444, 1108, 1665, 2611 |
| LweI | GCATC | 6 cut(s) | 1177, 1279, 1492, 1699, 2106, 2920 |
| MaeI | CTAG | 5 cut(s) | 51, 1274, 1548, 2459, 2808 |
| MaeII | ACGT | 2 cut(s) | 1017, 2936 |
| MaeIII | GTNAC | 9 cut(s) | 246, 472, 569, 963, 1443, 1589, 2303, 2501, 2876 |
| MalI | GATC | 4 cut(s) | 717, 921, 2145, 2457 |
| MboI | GATC | 4 cut(s) | 715, 919, 2143, 2455 |
| MboII | GAAGA | 9 cut(s) | 390, 791, 1121, 1852, 2306, 2747, 2776, 2923, 2963 |
| MfeI | CAATTG | 2 cut(s) | 501, 2830 |
| MflI | RGATCY | 3 cut(s) | 919, 2143, 2455 |
| MhlI | GDGCHC | 2 cut(s) | 1640, 2736 |
| MlsI | TGGCCA | 2 cut(s) | 888, 1674 |
| MluNI | TGGCCA | 2 cut(s) | 888, 1674 |
| MlyI | GAGTC | 1 cut(s) | 1129 |
| MmeI | TCCRAC | 2 cut(s) | 2819, 2844 |
| Mox20I | TGGCCA | 2 cut(s) | 888, 1674 |
| Mph1103I | ATGCAT | 1 cut(s) | 591 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2174, 2955 |
| MscI | TGGCCA | 2 cut(s) | 888, 1674 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1596 |
| Msp20I | TGGCCA | 2 cut(s) | 888, 1674 |
| MspA1I | CMGCKG | 2 cut(s) | 1678, 1931 |
| MspCI | CTTAAG | 2 cut(s) | 968, 2048 |
| MspI | CCGG | 2 cut(s) | 1194, 1901 |
| MspR9I | CCNGG | 5 cut(s) | 276, 629, 1821, 1902, 2430 |
| MunI | CAATTG | 2 cut(s) | 501, 2830 |
| Mva1269I | GAATGC | 3 cut(s) | 676, 1768, 2252 |
| MvaI | CCWGG | 4 cut(s) | 276, 629, 1821, 2430 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 140, 1100 |
| NciI | CCSGG | 1 cut(s) | 1902 |
| NdeII | GATC | 4 cut(s) | 715, 919, 2143, 2455 |
| NlaIV | GGNNCC | 6 cut(s) | 461, 865, 921, 1263, 2145, 2838 |
| NmeAIII | GCCGAG | 2 cut(s) | 1492, 2356 |
| NmuCI | GTSAC | 3 cut(s) | 963, 1589, 2303 |
| NsiI | ATGCAT | 1 cut(s) | 591 |
| NspI | RCATGY | 1 cut(s) | 1060 |
| PciSI | GCTCTTC | 1 cut(s) | 2289 |
| PctI | GAATGC | 3 cut(s) | 676, 1768, 2252 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2174, 2955 |
| PfeI | GAWTC | 7 cut(s) | 580, 1032, 1362, 1384, 1407, 2816, 2902 |
| PfoI | TCCNGGA | 1 cut(s) | 274 |
| PkrI | GCNGC | 8 cut(s) | 79, 145, 283, 434, 1123, 1335, 1680, 2601 |
| PleI | GAGTC | 1 cut(s) | 1129 |
| PmaCI | CACGTG | 1 cut(s) | 2937 |
| PmlI | CACGTG | 1 cut(s) | 2937 |
| PpsI | GAGTC | 1 cut(s) | 1129 |
| Ppu21I | YACGTR | 1 cut(s) | 2937 |
| PpuMI | RGGWCCY | 1 cut(s) | 459 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2614 |
| PsiI | TTATAA | 2 cut(s) | 1568, 1686 |
| Psp5II | RGGWCCY | 1 cut(s) | 459 |
| Psp6I | CCWGG | 4 cut(s) | 274, 627, 1819, 2428 |
| PspCI | CACGTG | 1 cut(s) | 2937 |
| PspEI | GGTNACC | 1 cut(s) | 569 |
| PspGI | CCWGG | 4 cut(s) | 274, 627, 1819, 2428 |
| PspN4I | GGNNCC | 6 cut(s) | 461, 865, 921, 1263, 2145, 2838 |
| PspPI | GGNCC | 5 cut(s) | 459, 631, 1228, 2328, 2663 |
| PspPPI | RGGWCCY | 1 cut(s) | 459 |
| PsuI | RGATCY | 3 cut(s) | 919, 2143, 2455 |
| PvuII | CAGCTG | 2 cut(s) | 1678, 1931 |
| RsaI | GTAC | 8 cut(s) | 349, 1391, 1472, 1497, 2212, 2342, 2437, 2463 |
| RsaNI | GTAC | 8 cut(s) | 348, 1390, 1471, 1496, 2211, 2341, 2436, 2462 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1596 |
| SapI | GCTCTTC | 1 cut(s) | 2289 |
| SatI | GCNGC | 8 cut(s) | 78, 144, 282, 433, 1122, 1334, 1679, 2600 |
| Sau3AI | GATC | 4 cut(s) | 715, 919, 2143, 2455 |
| Sau96I | GGNCC | 5 cut(s) | 459, 631, 1228, 2328, 2663 |
| ScaI | AGTACT | 3 cut(s) | 1391, 2437, 2463 |
| SchI | GAGTC | 1 cut(s) | 1129 |
| ScrFI | CCNGG | 5 cut(s) | 276, 629, 1821, 1902, 2430 |
| SduI | GDGCHC | 2 cut(s) | 1640, 2736 |
| SfaNI | GCATC | 6 cut(s) | 1177, 1279, 1492, 1699, 2106, 2920 |
| SinI | GGWCC | 2 cut(s) | 459, 2663 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1596 |
| SmlI | CTYRAG | 7 cut(s) | 968, 1061, 1088, 1221, 2048, 2409, 2495 |
| SmoI | CTYRAG | 7 cut(s) | 968, 1061, 1088, 1221, 2048, 2409, 2495 |
| SsiI | CCGC | 6 cut(s) | 800, 1333, 1764, 2214, 2225, 2718 |
| SspI | AATATT | 2 cut(s) | 181, 1698 |
| SspMI | CTAG | 5 cut(s) | 51, 1274, 1548, 2459, 2808 |
| StyD4I | CCNGG | 5 cut(s) | 274, 627, 1819, 1900, 2428 |
| StyI | CCWWGG | 2 cut(s) | 883, 2324 |
| TaaI | ACNGT | 4 cut(s) | 129, 478, 2085, 2271 |
| TaiI | ACGT | 2 cut(s) | 1020, 2939 |
| TaqI | TCGA | 3 cut(s) | 1133, 1802, 2068 |
| TatI | WGTACW | 5 cut(s) | 347, 1389, 1470, 2435, 2461 |
| TauI | GCSGC | 1 cut(s) | 1336 |
| TfiI | GAWTC | 7 cut(s) | 580, 1032, 1362, 1384, 1407, 2816, 2902 |
| TscAI | CASTG | 9 cut(s) | 921, 1314, 2068, 2140, 2164, 2312, 2560, 2625, 2745 |
| TseFI | GTSAC | 3 cut(s) | 963, 1589, 2303 |
| TseI | GCWGC | 7 cut(s) | 77, 143, 281, 432, 1121, 1678, 2599 |
| Tsp45I | GTSAC | 3 cut(s) | 963, 1589, 2303 |
| TspGWI | ACGGA | 2 cut(s) | 739, 2258 |
| TspRI | CASTG | 9 cut(s) | 921, 1314, 2068, 2140, 2164, 2312, 2560, 2625, 2745 |
| Vha464I | CTTAAG | 2 cut(s) | 968, 2048 |
| VneI | GTGCAC | 1 cut(s) | 2732 |
| VpaK11BI | GGWCC | 2 cut(s) | 459, 2663 |
| XceI | RCATGY | 1 cut(s) | 1060 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 502, 1935 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2174, 2955 |
| XspI | CTAG | 5 cut(s) | 51, 1274, 1548, 2459, 2808 |
| ZrmI | AGTACT | 3 cut(s) | 1391, 2437, 2463 |
| Zsp2I | ATGCAT | 1 cut(s) | 591 |