Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Reverse (-)

9146176 .. 9147543

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGATAATGAAATTTAATATTCAGGGCACTACTTTTCAACTACAAGGAGAAACCAAAGCTGAGGCTGTAGTAATTGGCTGCAAATCAATGATCAGATTGCTAAGAAAGGAAAGAGAAGCCATGCTAGTCCAAGTTCAACCCTCCCTCTCCGCTCAAGAGGTACAACCTCCAAACCCTGAAATTCAAGCATTGGTACACAAGTTTGCTGACTTGTTCATAACTCCGACCTCCTTTCCACCAGTCCGAAAGCAAGATCACAAAATCGAGTTACTTCCTAATACTCCACCAGTGAGTGTGAGGCCATATAGATATCCTCATTTTCAAAAAGCTGAAATTGAGAAAATTGTCCGGGAACTACTTGATAATGGGGTTATTAAGCCAAGTGTTAGCCCATTCTCCTCTCCAGTATTGTTGGTCAAAAAGAAAGATGGTACTTGGAGGATGTGTGTGGATTATAGGTCCCTCAATGCTGCCACAGTGAAAGATAAGTACCCCATCCCAATTATGGATGAATTGCTAGACGAAGTTCATGGCTCAGTCATTTTTACCAAGCTTGATTTAAGGTTTGGATATCACCAGATTAGGATGCACCCTGCTGATATGAGCAAGACAGCTTTTAGAACTCATAATGGTCACTATGAGTTTCTAGTTATGCCATTTGGACTAACAAATGCACCATCTACTTTTCAGTCGGTAATGAATGATGTGTTGCGAGATTATTTGAGGAAGTTTGCCCTGGTATTCTTTGATGACATCTTAATTTACAGCTCTTCTTTACAAGCTCACTTGGAACATTTGGAGAAGATCTTCAAGAGGTTACACGCTAATGCTTTGAAGATTAAAGAGAGTAAATGCAGTTTTGGAGTGTCACAAGTCGAATATTTAGGTCACATAATCAGCAAGGAGGGCATGGCAGATCCAACAAAAATAGAGTGCATAAAAAACTGGAACAAACCTCAAACTGTCAAAGGGCTCAGGGGGTTCCTAGGGTTGGCCGGCTATTATAGAAAGTTTGTGAGGAATTTTGGCCTCATTGCCAAGCCACTCACTAATATGTTGAAGGTTGGTGAGTTTCAGTGGACACAAGAATCTGAAGTTGCTTTTGAAGCCTTGAAGCATGCTCTCATGAACATACCAGTGTTAGCTCTGCCAGATTTTTCCAAGGAGTTCACTATTGAGTGTCAGGGCCAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

398

Amino Acids

45.48

Weight (kDa)

9.19

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	139 - 299	2e-41	Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2	PF17919	360 - 394	8e-07	RNase H-like domain found in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	152
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	911
AcoI	YGGCCR	1 cut(s)	993
AcsI	RAATTY	3 cut(s)	11, 180, 1021
AcuI	CTGAAG	1 cut(s)	1113
AfaI	GTAC	4 cut(s)	162, 195, 433, 491
AfiI	CCNNNNNNNGG	2 cut(s)	505, 991
AgsI	TTSAA	9 cut(s)	38, 137, 185, 323, 811, 835, 1060, 1106, 1114
AjnI	CCWGG	1 cut(s)	735
AluBI	AGCT	7 cut(s)	59, 329, 553, 614, 768, 782, 1145
AluI	AGCT	7 cut(s)	59, 329, 553, 614, 768, 782, 1145
AlwI	GGATC	1 cut(s)	911
AoxI	GGCC	4 cut(s)	299, 993, 1027, 1186
ApeKI	GCWGC	2 cut(s)	78, 470
ApoI	RAATTY	3 cut(s)	11, 180, 1021
Asp700I	GAANNNNTTC	1 cut(s)	806
AspA2I	CCTAGG	1 cut(s)	985
AspS9I	GGNCC	2 cut(s)	459, 1186
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	566, 1079
AvaII	GGWCC	1 cut(s)	459
AvrII	CCTAGG	1 cut(s)	985
BaeGI	GKGCMC	1 cut(s)	29
BaeI	ACNNNNGTAYC	2 cut(s)	185, 218
BanII	GRGCYC	1 cut(s)	975
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	65, 457
BccI	CCATC	3 cut(s)	422, 503, 685
BciT130I	CCWGG	1 cut(s)	737
BclI	TGATCA	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	350
BfaI	CTAG	4 cut(s)	125, 518, 647, 986
BfmI	CTRYAG	1 cut(s)	66
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	2 cut(s)	79, 471
BlnI	CCTAGG	1 cut(s)	985
BlsI	GCNGC	2 cut(s)	80, 472
Bme1390I	CCNGG	2 cut(s)	350, 737
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	2 cut(s)	459, 1186
BmiI	GGNNCC	2 cut(s)	461, 983
BmrFI	CCNGG	2 cut(s)	350, 737
BmsI	GCATC	1 cut(s)	576
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	2 cut(s)	60, 974
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	735, 985, 1161
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 991
Bse118I	RCCGGY	1 cut(s)	995
Bse1I	ACTGG	6 cut(s)	239, 287, 404, 950, 1136, 1189
Bse3DI	GCAATG	1 cut(s)	1032
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	3 cut(s)	735, 985, 1161
BseGI	GGATG	4 cut(s)	447, 495, 514, 591
BseLI	CCNNNNNNNGG	2 cut(s)	505, 991
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	3 cut(s)	51, 549, 988
BseNI	ACTGG	6 cut(s)	239, 287, 404, 950, 1136, 1189
BseRI	GAGGAG	1 cut(s)	388
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	65, 457
BshFI	GGCC	4 cut(s)	301, 995, 1029, 1188
BsiSI	CCGG	2 cut(s)	349, 996
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	505, 991
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	4 cut(s)	301, 995, 1029, 1188
Bsp1286I	GDGCHC	2 cut(s)	29, 975
Bsp143I	GATC	4 cut(s)	90, 253, 804, 916
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	4 cut(s)	301, 995, 1029, 1188
BspCNI	CTCAG	3 cut(s)	52, 548, 987
BspHI	TCATGA	1 cut(s)	1125
BspLI	GGNNCC	2 cut(s)	461, 983
BspPI	GGATC	1 cut(s)	911
BspQI	GCTCTTC	1 cut(s)	775
BsrBI	CCGCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	1032
BsrFI	RCCGGY	1 cut(s)	995
BsrI	ACTGG	6 cut(s)	239, 287, 404, 950, 1136, 1189
BssAI	RCCGGY	1 cut(s)	995
BssECI	CCNNGG	3 cut(s)	735, 985, 1161
BssMI	GATC	4 cut(s)	90, 253, 804, 916
BssT1I	CCWWGG	2 cut(s)	985, 1161
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	2 cut(s)	478, 964
Bst6I	CTCTTC	1 cut(s)	775
BstC8I	GCNNGC	2 cut(s)	997, 1119
BstDEI	CTNAG	4 cut(s)	60, 101, 535, 974
BstF5I	GGATG	4 cut(s)	447, 495, 514, 591
BstKTI	GATC	4 cut(s)	93, 256, 807, 919
BstMBI	GATC	4 cut(s)	90, 253, 804, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	906, 1106
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	1121
BstSCI	CCNGG	2 cut(s)	348, 735
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	65, 457
BstX2I	RGATCY	2 cut(s)	804, 916
BstYI	RGATCY	2 cut(s)	804, 916
BsuRI	GGCC	4 cut(s)	301, 995, 1029, 1188
BtsCI	GGATG	4 cut(s)	447, 495, 514, 591
BtsIMutI	CAGTG	4 cut(s)	294, 483, 1082, 1143
Cac8I	GCNNGC	2 cut(s)	997, 1119
CciI	TCATGA	1 cut(s)	1125
Cfr10I	RCCGGY	1 cut(s)	995
Cfr13I	GGNCC	2 cut(s)	459, 1186
Csp6I	GTAC	4 cut(s)	161, 194, 432, 490
CviAII	CATG	5 cut(s)	121, 530, 910, 1118, 1126
CviQI	GTAC	4 cut(s)	161, 194, 432, 490
DdeI	CTNAG	4 cut(s)	60, 101, 535, 974
DpnI	GATC	4 cut(s)	92, 255, 806, 918
DpnII	GATC	4 cut(s)	90, 253, 804, 916
EaeI	YGGCCR	1 cut(s)	993
Eam1104I	CTCTTC	1 cut(s)	775
EarI	CTCTTC	1 cut(s)	775
Eco130I	CCWWGG	2 cut(s)	985, 1161
Eco24I	GRGCYC	1 cut(s)	975
Eco32I	GATATC	2 cut(s)	311, 572
Eco47I	GGWCC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	1113
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	735
EcoRV	GATATC	2 cut(s)	311, 572
EcoT14I	CCWWGG	2 cut(s)	985, 1161
EcoT38I	GRGCYC	1 cut(s)	975
ErhI	CCWWGG	2 cut(s)	985, 1161
FaeI	CATG	5 cut(s)	124, 533, 913, 1121, 1129
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	5 cut(s)	120, 529, 909, 1117, 1125
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	79, 471
FokI	GGATG	4 cut(s)	454, 482, 521, 598
FriOI	GRGCYC	1 cut(s)	975
Fsp4HI	GCNGC	2 cut(s)	79, 471
FspBI	CTAG	4 cut(s)	125, 518, 647, 986
GluI	GCNGC	2 cut(s)	79, 471
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	4 cut(s)	301, 995, 1029, 1188
HapII	CCGG	2 cut(s)	349, 996
Hin1II	CATG	5 cut(s)	124, 533, 913, 1121, 1129
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	1 cut(s)	1088
HpaII	CCGG	2 cut(s)	349, 996
HphI	GGTGA	2 cut(s)	566, 1079
Hpy166II	GTNNAC	3 cut(s)	196, 1080, 1170
Hpy188I	TCNGA	4 cut(s)	95, 225, 245, 1093
Hpy188III	TCNNGA	4 cut(s)	155, 811, 1126, 1194
Hpy8I	GTNNAC	3 cut(s)	196, 1080, 1170
HpyAV	CCTTC	1 cut(s)	1054
HpyCH4III	ACNGT	2 cut(s)	478, 964
HpyCH4V	TGCA	5 cut(s)	81, 589, 674, 855, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	906, 1106
HpyF3I	CTNAG	4 cut(s)	60, 101, 535, 974
Hsp92II	CATG	5 cut(s)	124, 533, 913, 1121, 1129
KroI	GCCGGC	1 cut(s)	995
KroNI	GCCGGC	1 cut(s)	997
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	4 cut(s)	90, 253, 804, 916
LguI	GCTCTTC	1 cut(s)	775
Lsp1109I	GCAGC	2 cut(s)	65, 457
LweI	GCATC	1 cut(s)	576
MaeI	CTAG	4 cut(s)	125, 518, 647, 986
MaeIII	GTNAC	5 cut(s)	267, 632, 816, 867, 887
MalI	GATC	4 cut(s)	92, 255, 806, 918
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	4 cut(s)	90, 253, 804, 916
MboII	GAAGA	4 cut(s)	762, 799, 814, 847
MflI	RGATCY	2 cut(s)	804, 916
MhlI	GDGCHC	2 cut(s)	29, 975
MluCI	AATT	9 cut(s)	11, 72, 180, 333, 342, 501, 512, 759, 1021
MmeI	TCCRAC	2 cut(s)	248, 944
MroNI	GCCGGC	1 cut(s)	995
MroXI	GAANNNNTTC	1 cut(s)	806
MseI	TTAA	5 cut(s)	15, 375, 560, 758, 840
MslI	CAYNNNNRTG	3 cut(s)	825, 1052, 1136
MspI	CCGG	2 cut(s)	349, 996
MspR9I	CCNGG	2 cut(s)	350, 737
MvaI	CCWGG	1 cut(s)	737
MwoI	GCNNNNNNNGC	2 cut(s)	906, 1106
NaeI	GCCGGC	1 cut(s)	997
NciI	CCSGG	1 cut(s)	350
NdeII	GATC	4 cut(s)	90, 253, 804, 916
NgoMIV	GCCGGC	1 cut(s)	995
NlaIII	CATG	5 cut(s)	124, 533, 913, 1121, 1129
NlaIV	GGNNCC	2 cut(s)	461, 983
NmuCI	GTSAC	3 cut(s)	632, 867, 887
NspI	RCATGY	1 cut(s)	1121
PaeI	GCATGC	1 cut(s)	1121
PagI	TCATGA	1 cut(s)	1125
PciSI	GCTCTTC	1 cut(s)	775
PdiI	GCCGGC	1 cut(s)	997
PdmI	GAANNNNTTC	1 cut(s)	806
PfeI	GAWTC	1 cut(s)	1088
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	80, 472
PpuMI	RGGWCCY	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	2 cut(s)	461, 983
PspPI	GGNCC	2 cut(s)	459, 1186
PspPPI	RGGWCCY	1 cut(s)	459
PsuI	RGATCY	2 cut(s)	804, 916
RsaI	GTAC	4 cut(s)	162, 195, 433, 491
RsaNI	GTAC	4 cut(s)	161, 194, 432, 490
RseI	CAYNNNNRTG	3 cut(s)	825, 1052, 1136
SapI	GCTCTTC	1 cut(s)	775
SaqAI	TTAA	5 cut(s)	15, 375, 560, 758, 840
SatI	GCNGC	2 cut(s)	79, 471
Sau3AI	GATC	4 cut(s)	90, 253, 804, 916
Sau96I	GGNCC	2 cut(s)	459, 1186
ScrFI	CCNGG	2 cut(s)	350, 737
SduI	GDGCHC	2 cut(s)	29, 975
SfaNI	GCATC	1 cut(s)	576
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	459
SmiMI	CAYNNNNRTG	3 cut(s)	825, 1052, 1136
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SphI	GCATGC	1 cut(s)	1121
Sse9I	AATT	9 cut(s)	11, 72, 180, 333, 342, 501, 512, 759, 1021
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	2 cut(s)	19, 881
SspMI	CTAG	4 cut(s)	125, 518, 647, 986
StyD4I	CCNGG	2 cut(s)	348, 735
StyI	CCWWGG	2 cut(s)	985, 1161
TaaI	ACNGT	2 cut(s)	478, 964
TaqI	TCGA	2 cut(s)	264, 876
TasI	AATT	9 cut(s)	11, 72, 180, 333, 342, 501, 512, 759, 1021
TfiI	GAWTC	1 cut(s)	1088
Tru1I	TTAA	5 cut(s)	15, 375, 560, 758, 840
Tru9I	TTAA	5 cut(s)	15, 375, 560, 758, 840
TscAI	CASTG	4 cut(s)	294, 483, 1082, 1143
TseFI	GTSAC	3 cut(s)	632, 867, 887
TseI	GCWGC	2 cut(s)	78, 470
Tsp45I	GTSAC	3 cut(s)	632, 867, 887
TspDTI	ATGAA	6 cut(s)	23, 205, 518, 525, 713, 1142
TspRI	CASTG	4 cut(s)	294, 483, 1082, 1143
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	3 cut(s)	11, 180, 1021
XceI	RCATGY	1 cut(s)	1121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmaJI	CCTAGG	1 cut(s)	985
XmnI	GAANNNNTTC	1 cut(s)	806
XspI	CTAG	4 cut(s)	125, 518, 647, 986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.