transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 2 - 68 | 4.7e-10 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 203 |
| AciI | CCGC | 1 cut(s) | 203 |
| AcsI | RAATTY | 3 cut(s) | 4, 95, 179 |
| AgsI | TTSAA | 3 cut(s) | 43, 172, 184 |
| AluBI | AGCT | 2 cut(s) | 116, 128 |
| AluI | AGCT | 2 cut(s) | 116, 128 |
| ApeKI | GCWGC | 2 cut(s) | 20, 128 |
| ApoI | RAATTY | 3 cut(s) | 4, 95, 179 |
| BbvI | GCAGC | 2 cut(s) | 7, 115 |
| BfaI | CTAG | 2 cut(s) | 111, 195 |
| BfmI | CTRYAG | 1 cut(s) | 21 |
| BisI | GCNGC | 2 cut(s) | 21, 129 |
| BlsI | GCNGC | 2 cut(s) | 22, 130 |
| BmsI | GCATC | 2 cut(s) | 7, 55 |
| BseXI | GCAGC | 2 cut(s) | 7, 115 |
| BspACI | CCGC | 1 cut(s) | 203 |
| BspMAI | CTGCAG | 1 cut(s) | 25 |
| BspQI | GCTCTTC | 1 cut(s) | 193 |
| BsrBI | CCGCTC | 1 cut(s) | 203 |
| Bst6I | CTCTTC | 1 cut(s) | 193 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 200 |
| BstSFI | CTRYAG | 1 cut(s) | 21 |
| BstV1I | GCAGC | 2 cut(s) | 7, 115 |
| CviJI | RGCY | 2 cut(s) | 116, 128 |
| CviKI_1 | RGCY | 2 cut(s) | 116, 128 |
| DraI | TTTAAA | 1 cut(s) | 139 |
| Eam1104I | CTCTTC | 1 cut(s) | 193 |
| EarI | CTCTTC | 1 cut(s) | 193 |
| FauI | CCCGC | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 2 cut(s) | 21, 129 |
| Fsp4HI | GCNGC | 2 cut(s) | 21, 129 |
| FspBI | CTAG | 2 cut(s) | 111, 195 |
| GluI | GCNGC | 2 cut(s) | 21, 129 |
| Hpy188I | TCNGA | 1 cut(s) | 79 |
| HpyAV | CCTTC | 1 cut(s) | 85 |
| HpyCH4V | TGCA | 2 cut(s) | 23, 106 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 200 |
| LguI | GCTCTTC | 1 cut(s) | 193 |
| Lsp1109I | GCAGC | 2 cut(s) | 7, 115 |
| LweI | GCATC | 2 cut(s) | 7, 55 |
| MaeI | CTAG | 2 cut(s) | 111, 195 |
| MbiI | CCGCTC | 1 cut(s) | 203 |
| MboII | GAAGA | 1 cut(s) | 210 |
| MluCI | AATT | 4 cut(s) | 4, 95, 140, 179 |
| MseI | TTAA | 2 cut(s) | 138, 208 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 200 |
| PciSI | GCTCTTC | 1 cut(s) | 193 |
| PkrI | GCNGC | 2 cut(s) | 22, 130 |
| PstI | CTGCAG | 1 cut(s) | 25 |
| SapI | GCTCTTC | 1 cut(s) | 193 |
| SaqAI | TTAA | 2 cut(s) | 138, 208 |
| SatI | GCNGC | 2 cut(s) | 21, 129 |
| SetI | ASST | 2 cut(s) | 118, 130 |
| SfaNI | GCATC | 2 cut(s) | 7, 55 |
| SfcI | CTRYAG | 1 cut(s) | 21 |
| SgeI | CNNG | 6 cut(s) | 55, 75, 80, 123, 137, 203 |
| Sse9I | AATT | 4 cut(s) | 4, 95, 140, 179 |
| SsiI | CCGC | 1 cut(s) | 203 |
| SspMI | CTAG | 2 cut(s) | 111, 195 |
| TasI | AATT | 4 cut(s) | 4, 95, 140, 179 |
| Tru1I | TTAA | 2 cut(s) | 138, 208 |
| Tru9I | TTAA | 2 cut(s) | 138, 208 |
| TseI | GCWGC | 2 cut(s) | 20, 128 |
| TspDTI | ATGAA | 2 cut(s) | 17, 104 |
| XapI | RAATTY | 3 cut(s) | 4, 95, 179 |
| XspI | CTAG | 2 cut(s) | 111, 195 |