transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ty3_capsid | PF19259 | 320 - 468 | 1.8e-10 | Ty3 transposon capsid-like protein |
| Retrotrans_gag | PF03732 | 330 - 418 | 3.9e-11 | Retrotransposon gag protein |
| gag-asp_proteas | PF13975 | 601 - 689 | 3.1e-07 | gag-polyprotein putative aspartyl protease |
| RVP_2 | PF08284 | 605 - 692 | 8.3e-07 | Retroviral aspartyl protease |
| RVT_1 | PF00078 | 841 - 999 | 2.9e-36 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1593 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 882 |
| Acc36I | ACCTGC | 1 cut(s) | 1888 |
| AccB1I | GGYRCC | 1 cut(s) | 569 |
| AccI | GTMKAC | 3 cut(s) | 164, 2330, 2613 |
| AccIII | TCCGGA | 1 cut(s) | 3022 |
| AciI | CCGC | 4 cut(s) | 128, 917, 938, 2252 |
| AclWI | GGATC | 6 cut(s) | 148, 848, 861, 2273, 2473, 3014 |
| AcuI | CTGAAG | 4 cut(s) | 228, 990, 1497, 3147 |
| AdeI | CACNNNGTG | 1 cut(s) | 2075 |
| AfaI | GTAC | 4 cut(s) | 947, 2121, 2648, 2965 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 467, 512, 1595, 2030 |
| AflII | CTTAAG | 2 cut(s) | 2821, 2933 |
| AflIII | ACRYGT | 2 cut(s) | 1759, 1945 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1946, 2668 |
| AhlI | ACTAGT | 1 cut(s) | 1889 |
| AjiI | CACGTC | 1 cut(s) | 1290 |
| AjnI | CCWGG | 4 cut(s) | 475, 1051, 1201, 2380 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 780, 812 |
| Alw21I | GWGCWC | 3 cut(s) | 76, 829, 1201 |
| Alw26I | GTCTC | 7 cut(s) | 54, 123, 868, 1250, 1296, 1536, 2774 |
| AlwI | GGATC | 6 cut(s) | 148, 848, 861, 2273, 2473, 3014 |
| Ama87I | CYCGRG | 1 cut(s) | 2901 |
| Aor13HI | TCCGGA | 1 cut(s) | 3022 |
| AoxI | GGCC | 4 cut(s) | 1283, 1564, 2405, 3036 |
| ApeKI | GCWGC | 7 cut(s) | 130, 609, 992, 1016, 1124, 1345, 2538 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2182, 2214 |
| AseI | ATTAAT | 1 cut(s) | 2297 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1653, 2043, 2808 |
| AspLEI | GCGC | 2 cut(s) | 2183, 3060 |
| AspS9I | GGNCC | 4 cut(s) | 560, 656, 1284, 1940 |
| AsuC2I | CCSGG | 1 cut(s) | 231 |
| AvaI | CYCGRG | 1 cut(s) | 2901 |
| AvaII | GGWCC | 3 cut(s) | 560, 656, 1940 |
| AxyI | CCTNAGG | 2 cut(s) | 819, 2700 |
| BamHI | GGATCC | 1 cut(s) | 853 |
| BanI | GGYRCC | 1 cut(s) | 569 |
| BauI | CACGAG | 1 cut(s) | 1004 |
| BbsI | GAAGAC | 2 cut(s) | 1622, 2928 |
| Bbv12I | GWGCWC | 3 cut(s) | 76, 829, 1201 |
| BbvI | GCAGC | 7 cut(s) | 117, 621, 979, 1003, 1111, 1357, 2550 |
| BccI | CCATC | 6 cut(s) | 157, 1459, 1835, 2006, 2230, 2528 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 53, 87, 1019, 1053, 2882, 2916 |
| BciT130I | CCWGG | 4 cut(s) | 477, 1053, 1203, 2382 |
| BciVI | GTATCC | 3 cut(s) | 2159, 2427, 2669 |
| BcnI | CCSGG | 1 cut(s) | 231 |
| BcoDI | GTCTC | 7 cut(s) | 54, 123, 868, 1250, 1296, 1536, 2774 |
| BcuI | ACTAGT | 1 cut(s) | 1889 |
| BfmI | CTRYAG | 3 cut(s) | 1017, 2286, 2863 |
| BfoI | RGCGCY | 1 cut(s) | 2184 |
| BfrI | CTTAAG | 2 cut(s) | 2821, 2933 |
| BfuAI | ACCTGC | 1 cut(s) | 1888 |
| BfuI | GTATCC | 3 cut(s) | 2159, 2427, 2669 |
| BisI | GCNGC | 7 cut(s) | 131, 610, 993, 1017, 1125, 1346, 2539 |
| BlsI | GCNGC | 7 cut(s) | 132, 611, 994, 1018, 1126, 1347, 2540 |
| BmcAI | AGTACT | 1 cut(s) | 947 |
| Bme1390I | CCNGG | 5 cut(s) | 231, 477, 1053, 1203, 2382 |
| Bme18I | GGWCC | 3 cut(s) | 560, 656, 1940 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1946, 2668 |
| BmeT110I | CYCGRG | 1 cut(s) | 2901 |
| BmgBI | CACGTC | 1 cut(s) | 1290 |
| BmgT120I | GGNCC | 4 cut(s) | 560, 656, 1284, 1940 |
| BmiI | GGNNCC | 7 cut(s) | 111, 183, 482, 547, 571, 855, 2263 |
| BmrFI | CCNGG | 5 cut(s) | 231, 477, 1053, 1203, 2382 |
| BmsI | GCATC | 5 cut(s) | 870, 1009, 1051, 1968, 2902 |
| BpiI | GAAGAC | 2 cut(s) | 1622, 2928 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 211, 243 |
| BpmI | CTGGAG | 2 cut(s) | 339, 726 |
| BpuEI | CTTGAG | 2 cut(s) | 1458, 2896 |
| BpuMI | CCSGG | 1 cut(s) | 231 |
| Bsa29I | ATCGAT | 1 cut(s) | 2563 |
| BsaAI | YACGTR | 1 cut(s) | 341 |
| BsaI | GGTCTC | 2 cut(s) | 1250, 2774 |
| BsaJI | CCNNGG | 3 cut(s) | 475, 476, 2169 |
| BsaWI | WCCGGW | 3 cut(s) | 1937, 2605, 3022 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3000, 3030 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 467, 512, 1595, 2030 |
| Bse118I | RCCGGY | 1 cut(s) | 106 |
| Bse1I | ACTGG | 2 cut(s) | 2334, 2469 |
| Bse21I | CCTNAGG | 2 cut(s) | 819, 2700 |
| Bse3DI | GCAATG | 4 cut(s) | 632, 1002, 1284, 2226 |
| BseAI | TCCGGA | 1 cut(s) | 3022 |
| BseBI | CCWGG | 4 cut(s) | 477, 1053, 1203, 2382 |
| BseCI | ATCGAT | 1 cut(s) | 2563 |
| BseDI | CCNNGG | 3 cut(s) | 475, 476, 2169 |
| BseGI | GGATG | 7 cut(s) | 443, 1015, 1273, 1451, 1867, 2539, 2710 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 467, 512, 1595, 2030 |
| BseMI | GCAATG | 4 cut(s) | 632, 1002, 1284, 2226 |
| BseNI | ACTGG | 2 cut(s) | 2334, 2469 |
| BseRI | GAGGAG | 3 cut(s) | 1365, 1368, 2494 |
| BseXI | GCAGC | 7 cut(s) | 117, 621, 979, 1003, 1111, 1357, 2550 |
| BseYI | CCCAGC | 1 cut(s) | 641 |
| BshFI | GGCC | 4 cut(s) | 1285, 1566, 2407, 3038 |
| BshNI | GGYRCC | 1 cut(s) | 569 |
| BshVI | ATCGAT | 1 cut(s) | 2563 |
| BsiHKAI | GWGCWC | 3 cut(s) | 76, 829, 1201 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2901 |
| BsiSI | CCGG | 5 cut(s) | 107, 231, 1938, 2606, 3023 |
| BslFI | GGGAC | 3 cut(s) | 1165, 1492, 2005 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 467, 512, 1595, 2030 |
| BsmAI | GTCTC | 7 cut(s) | 54, 123, 868, 1250, 1296, 1536, 2774 |
| BsmBI | CGTCTC | 1 cut(s) | 1296 |
| BsmFI | GGGAC | 3 cut(s) | 1165, 1492, 2005 |
| BsmI | GAATGC | 2 cut(s) | 439, 3083 |
| BsnI | GGCC | 4 cut(s) | 1285, 1566, 2407, 3038 |
| Bso31I | GGTCTC | 2 cut(s) | 1250, 2774 |
| BsoBI | CYCGRG | 1 cut(s) | 2901 |
| Bsp1286I | GDGCHC | 3 cut(s) | 76, 829, 1201 |
| Bsp13I | TCCGGA | 1 cut(s) | 3022 |
| Bsp1407I | TGTACA | 1 cut(s) | 2119 |
| Bsp143I | GATC | 7 cut(s) | 140, 853, 2278, 2478, 2564, 2859, 3019 |
| BspACI | CCGC | 4 cut(s) | 128, 917, 938, 2252 |
| BspANI | GGCC | 4 cut(s) | 1285, 1566, 2407, 3038 |
| BspDI | ATCGAT | 1 cut(s) | 2563 |
| BspEI | TCCGGA | 1 cut(s) | 3022 |
| BspHI | TCATGA | 1 cut(s) | 2812 |
| BspLI | GGNNCC | 7 cut(s) | 111, 183, 482, 547, 571, 855, 2263 |
| BspMAI | CTGCAG | 1 cut(s) | 1021 |
| BspMI | ACCTGC | 1 cut(s) | 1888 |
| BspPI | GGATC | 6 cut(s) | 148, 848, 861, 2273, 2473, 3014 |
| BspQI | GCTCTTC | 2 cut(s) | 81, 1627 |
| BspT107I | GGYRCC | 1 cut(s) | 569 |
| BspTI | CTTAAG | 2 cut(s) | 2821, 2933 |
| BspTNI | GGTCTC | 2 cut(s) | 1250, 2774 |
| BsrDI | GCAATG | 4 cut(s) | 632, 1002, 1284, 2226 |
| BsrFI | RCCGGY | 1 cut(s) | 106 |
| BsrGI | TGTACA | 1 cut(s) | 2119 |
| BsrI | ACTGG | 2 cut(s) | 2334, 2469 |
| BssAI | RCCGGY | 1 cut(s) | 106 |
| BssECI | CCNNGG | 3 cut(s) | 475, 476, 2169 |
| BssMI | GATC | 7 cut(s) | 140, 853, 2278, 2478, 2564, 2859, 3019 |
| BssSI | CACGAG | 1 cut(s) | 1004 |
| BssT1I | CCWWGG | 1 cut(s) | 2169 |
| Bst2BI | CACGAG | 1 cut(s) | 1004 |
| Bst2UI | CCWGG | 4 cut(s) | 477, 1053, 1203, 2382 |
| Bst4CI | ACNGT | 8 cut(s) | 162, 175, 206, 733, 1156, 1750, 2584, 2670 |
| Bst6I | CTCTTC | 5 cut(s) | 81, 580, 1323, 1627, 1692 |
| BstAFI | CTTAAG | 2 cut(s) | 2821, 2933 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3117 |
| BstAUI | TGTACA | 1 cut(s) | 2119 |
| BstBAI | YACGTR | 1 cut(s) | 341 |
| BstC8I | GCNNGC | 4 cut(s) | 501, 597, 633, 976 |
| BstEII | GGTNACC | 2 cut(s) | 470, 911 |
| BstF5I | GGATG | 7 cut(s) | 443, 1015, 1273, 1451, 1867, 2539, 2710 |
| BstH2I | RGCGCY | 1 cut(s) | 2184 |
| BstHHI | GCGC | 2 cut(s) | 2183, 3060 |
| BstKTI | GATC | 7 cut(s) | 143, 856, 2281, 2481, 2567, 2862, 3022 |
| BstMAI | GTCTC | 7 cut(s) | 54, 123, 868, 1250, 1296, 1536, 2774 |
| BstMBI | GATC | 7 cut(s) | 140, 853, 2278, 2478, 2564, 2859, 3019 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 35, 925, 992, 1196, 1342, 3117, 3201 |
| BstNI | CCWGG | 4 cut(s) | 477, 1053, 1203, 2382 |
| BstNSI | RCATGY | 4 cut(s) | 635, 1763, 1949, 3161 |
| BstPI | GGTNACC | 2 cut(s) | 470, 911 |
| BstSCI | CCNGG | 5 cut(s) | 229, 475, 1051, 1201, 2380 |
| BstSFI | CTRYAG | 3 cut(s) | 1017, 2286, 2863 |
| BstV1I | GCAGC | 7 cut(s) | 117, 621, 979, 1003, 1111, 1357, 2550 |
| BstV2I | GAAGAC | 2 cut(s) | 1622, 2928 |
| BstX2I | RGATCY | 4 cut(s) | 140, 853, 2278, 2478 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 902, 1059, 2608 |
| BstYI | RGATCY | 4 cut(s) | 140, 853, 2278, 2478 |
| Bsu15I | ATCGAT | 1 cut(s) | 2563 |
| Bsu36I | CCTNAGG | 2 cut(s) | 819, 2700 |
| BsuI | GTATCC | 3 cut(s) | 2159, 2427, 2669 |
| BsuRI | GGCC | 4 cut(s) | 1285, 1566, 2407, 3038 |
| BsuTUI | ATCGAT | 1 cut(s) | 2563 |
| BtgZI | GCGATG | 1 cut(s) | 1428 |
| BtrI | CACGTC | 1 cut(s) | 1290 |
| BtsCI | GGATG | 7 cut(s) | 443, 1015, 1273, 1451, 1867, 2539, 2710 |
| BtsI | GCAGTG | 2 cut(s) | 2163, 2649 |
| BtsIMutI | CAGTG | 3 cut(s) | 596, 2163, 2649 |
| BveI | ACCTGC | 1 cut(s) | 1888 |
| Cac8I | GCNNGC | 4 cut(s) | 501, 597, 633, 976 |
| CciI | TCATGA | 1 cut(s) | 2812 |
| CfoI | GCGC | 2 cut(s) | 2183, 3060 |
| Cfr10I | RCCGGY | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 4 cut(s) | 560, 656, 1284, 1940 |
| ClaI | ATCGAT | 1 cut(s) | 2563 |
| CseI | GACGC | 1 cut(s) | 872 |
| Csp6I | GTAC | 4 cut(s) | 946, 2120, 2647, 2964 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2955, 2990 |
| CviQI | GTAC | 4 cut(s) | 946, 2120, 2647, 2964 |
| DpnI | GATC | 7 cut(s) | 142, 855, 2280, 2480, 2566, 2861, 3021 |
| DpnII | GATC | 7 cut(s) | 140, 853, 2278, 2478, 2564, 2859, 3019 |
| DraI | TTTAAA | 1 cut(s) | 3069 |
| DraIII | CACNNNGTG | 1 cut(s) | 2075 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 882 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1946, 2668 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 882 |
| Eam1104I | CTCTTC | 5 cut(s) | 81, 580, 1323, 1627, 1692 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1946, 2668 |
| EarI | CTCTTC | 5 cut(s) | 81, 580, 1323, 1627, 1692 |
| EciI | GGCGGA | 1 cut(s) | 953 |
| Eco130I | CCWWGG | 1 cut(s) | 2169 |
| Eco147I | AGGCCT | 2 cut(s) | 1566, 2407 |
| Eco31I | GGTCTC | 2 cut(s) | 1250, 2774 |
| Eco47I | GGWCC | 3 cut(s) | 560, 656, 1940 |
| Eco57I | CTGAAG | 4 cut(s) | 228, 990, 1497, 3147 |
| Eco81I | CCTNAGG | 2 cut(s) | 819, 2700 |
| Eco88I | CYCGRG | 1 cut(s) | 2901 |
| Eco91I | GGTNACC | 2 cut(s) | 470, 911 |
| EcoO65I | GGTNACC | 2 cut(s) | 470, 911 |
| EcoRII | CCWGG | 4 cut(s) | 475, 1051, 1201, 2380 |
| EcoT14I | CCWWGG | 1 cut(s) | 2169 |
| EcoT22I | ATGCAT | 3 cut(s) | 637, 1002, 2895 |
| ErhI | CCWWGG | 1 cut(s) | 2169 |
| Esp3I | CGTCTC | 1 cut(s) | 1296 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2136, 2168, 2648, 2680, 3159, 3191 |
| FaqI | GGGAC | 3 cut(s) | 1165, 1492, 2005 |
| FauI | CCCGC | 2 cut(s) | 135, 924 |
| FauNDI | CATATG | 2 cut(s) | 1306, 1338 |
| FblI | GTMKAC | 3 cut(s) | 164, 2330, 2613 |
| Fnu4HI | GCNGC | 7 cut(s) | 131, 610, 993, 1017, 1125, 1346, 2539 |
| FokI | GGATG | 7 cut(s) | 430, 1022, 1280, 1438, 1854, 2546, 2717 |
| Fsp4HI | GCNGC | 7 cut(s) | 131, 610, 993, 1017, 1125, 1346, 2539 |
| GlaI | GCGC | 2 cut(s) | 2182, 3059 |
| GluI | GCNGC | 7 cut(s) | 131, 610, 993, 1017, 1125, 1346, 2539 |
| GsaI | CCCAGC | 1 cut(s) | 645 |
| GsuI | CTGGAG | 2 cut(s) | 339, 726 |
| HaeII | RGCGCY | 1 cut(s) | 2184 |
| HaeIII | GGCC | 4 cut(s) | 1285, 1566, 2407, 3038 |
| HapII | CCGG | 5 cut(s) | 107, 231, 1938, 2606, 3023 |
| HgaI | GACGC | 1 cut(s) | 872 |
| HhaI | GCGC | 2 cut(s) | 2183, 3060 |
| Hin6I | GCGC | 2 cut(s) | 2181, 3058 |
| HinP1I | GCGC | 2 cut(s) | 2181, 3058 |
| HincII | GTYRAC | 1 cut(s) | 2614 |
| HindII | GTYRAC | 1 cut(s) | 2614 |
| HindIII | AAGCTT | 1 cut(s) | 3202 |
| HinfI | GANTC | 5 cut(s) | 94, 1654, 1706, 2728, 3185 |
| HpaII | CCGG | 5 cut(s) | 107, 231, 1938, 2606, 3023 |
| Hpy166II | GTNNAC | 9 cut(s) | 165, 691, 1670, 2331, 2339, 2557, 2614, 2647, 3184 |
| Hpy188I | TCNGA | 8 cut(s) | 10, 33, 157, 1213, 1365, 1711, 3001, 3166 |
| Hpy8I | GTNNAC | 9 cut(s) | 165, 691, 1670, 2331, 2339, 2557, 2614, 2647, 3184 |
| Hpy99I | CGWCG | 2 cut(s) | 65, 2618 |
| HpyAV | CCTTC | 8 cut(s) | 195, 573, 1548, 1643, 1800, 2346, 2787, 3161 |
| HpyCH4III | ACNGT | 8 cut(s) | 162, 175, 206, 733, 1156, 1750, 2584, 2670 |
| HpyCH4IV | ACGT | 2 cut(s) | 340, 1289 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 35, 925, 992, 1196, 1342, 3117, 3201 |
| HpySE526I | ACGT | 2 cut(s) | 340, 1289 |
| HspAI | GCGC | 2 cut(s) | 2181, 3058 |
| Kpn2I | TCCGGA | 1 cut(s) | 3022 |
| Kzo9I | GATC | 7 cut(s) | 140, 853, 2278, 2478, 2564, 2859, 3019 |
| LguI | GCTCTTC | 2 cut(s) | 81, 1627 |
| LmnI | GCTCC | 8 cut(s) | 115, 187, 320, 508, 745, 940, 2051, 2639 |
| Lsp1109I | GCAGC | 7 cut(s) | 117, 621, 979, 1003, 1111, 1357, 2550 |
| LweI | GCATC | 5 cut(s) | 870, 1009, 1051, 1968, 2902 |
| MaeII | ACGT | 2 cut(s) | 340, 1289 |
| MalI | GATC | 7 cut(s) | 142, 855, 2280, 2480, 2566, 2861, 3021 |
| MboI | GATC | 7 cut(s) | 140, 853, 2278, 2478, 2564, 2859, 3019 |
| MfeI | CAATTG | 1 cut(s) | 2231 |
| MflI | RGATCY | 4 cut(s) | 140, 853, 2278, 2478 |
| MhlI | GDGCHC | 3 cut(s) | 76, 829, 1201 |
| MlyI | GAGTC | 2 cut(s) | 2722, 3179 |
| MmeI | TCCRAC | 3 cut(s) | 1479, 2506, 2856 |
| Mph1103I | ATGCAT | 3 cut(s) | 637, 1002, 2895 |
| MroI | TCCGGA | 1 cut(s) | 3022 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1653, 2043, 2808 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2606 |
| MspA1I | CMGCKG | 2 cut(s) | 130, 1517 |
| MspCI | CTTAAG | 2 cut(s) | 2821, 2933 |
| MspI | CCGG | 5 cut(s) | 107, 231, 1938, 2606, 3023 |
| MspR9I | CCNGG | 5 cut(s) | 231, 477, 1053, 1203, 2382 |
| MunI | CAATTG | 1 cut(s) | 2231 |
| Mva1269I | GAATGC | 2 cut(s) | 439, 3083 |
| MvaI | CCWGG | 4 cut(s) | 477, 1053, 1203, 2382 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 35, 925, 992, 1196, 1342, 3117, 3201 |
| NciI | CCSGG | 1 cut(s) | 231 |
| NdeI | CATATG | 2 cut(s) | 1306, 1338 |
| NdeII | GATC | 7 cut(s) | 140, 853, 2278, 2478, 2564, 2859, 3019 |
| NlaIV | GGNNCC | 7 cut(s) | 111, 183, 482, 547, 571, 855, 2263 |
| NmuCI | GTSAC | 7 cut(s) | 711, 911, 1170, 1675, 1769, 2290, 2578 |
| NsiI | ATGCAT | 3 cut(s) | 637, 1002, 2895 |
| NspI | RCATGY | 4 cut(s) | 635, 1763, 1949, 3161 |
| PaeI | GCATGC | 1 cut(s) | 635 |
| PagI | TCATGA | 1 cut(s) | 2812 |
| PasI | CCCWGGG | 1 cut(s) | 476 |
| PceI | AGGCCT | 2 cut(s) | 1566, 2407 |
| PciI | ACATGT | 2 cut(s) | 1759, 1945 |
| PciSI | GCTCTTC | 2 cut(s) | 81, 1627 |
| PctI | GAATGC | 2 cut(s) | 439, 3083 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1653, 2043, 2808 |
| PfeI | GAWTC | 3 cut(s) | 94, 1654, 1706 |
| PflFI | GACNNNGTC | 1 cut(s) | 1483 |
| PkrI | GCNGC | 7 cut(s) | 132, 611, 994, 1018, 1126, 1347, 2540 |
| PleI | GAGTC | 2 cut(s) | 2722, 3179 |
| PpsI | GAGTC | 2 cut(s) | 2722, 3179 |
| Ppu21I | YACGTR | 1 cut(s) | 341 |
| PscI | ACATGT | 2 cut(s) | 1759, 1945 |
| PshBI | ATTAAT | 1 cut(s) | 2297 |
| PsiI | TTATAA | 1 cut(s) | 1593 |
| Psp6I | CCWGG | 4 cut(s) | 475, 1051, 1201, 2380 |
| PspEI | GGTNACC | 2 cut(s) | 470, 911 |
| PspFI | CCCAGC | 1 cut(s) | 641 |
| PspGI | CCWGG | 4 cut(s) | 475, 1051, 1201, 2380 |
| PspN4I | GGNNCC | 7 cut(s) | 111, 183, 482, 547, 571, 855, 2263 |
| PspPI | GGNCC | 4 cut(s) | 560, 656, 1284, 1940 |
| PstI | CTGCAG | 1 cut(s) | 1021 |
| PsuI | RGATCY | 4 cut(s) | 140, 853, 2278, 2478 |
| PsyI | GACNNNGTC | 1 cut(s) | 1483 |
| PvuII | CAGCTG | 1 cut(s) | 1517 |
| RsaI | GTAC | 4 cut(s) | 947, 2121, 2648, 2965 |
| RsaNI | GTAC | 4 cut(s) | 946, 2120, 2647, 2964 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2606 |
| SalI | GTCGAC | 1 cut(s) | 2612 |
| SapI | GCTCTTC | 2 cut(s) | 81, 1627 |
| SatI | GCNGC | 7 cut(s) | 131, 610, 993, 1017, 1125, 1346, 2539 |
| Sau3AI | GATC | 7 cut(s) | 140, 853, 2278, 2478, 2564, 2859, 3019 |
| Sau96I | GGNCC | 4 cut(s) | 560, 656, 1284, 1940 |
| ScaI | AGTACT | 1 cut(s) | 947 |
| SchI | GAGTC | 2 cut(s) | 2722, 3179 |
| ScrFI | CCNGG | 5 cut(s) | 231, 477, 1053, 1203, 2382 |
| SduI | GDGCHC | 3 cut(s) | 76, 829, 1201 |
| SfaNI | GCATC | 5 cut(s) | 870, 1009, 1051, 1968, 2902 |
| SfcI | CTRYAG | 3 cut(s) | 1017, 2286, 2863 |
| SinI | GGWCC | 3 cut(s) | 560, 656, 1940 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2606 |
| SmlI | CTYRAG | 4 cut(s) | 1473, 2821, 2911, 2933 |
| SmoI | CTYRAG | 4 cut(s) | 1473, 2821, 2911, 2933 |
| SpeI | ACTAGT | 1 cut(s) | 1889 |
| SphI | GCATGC | 1 cut(s) | 635 |
| SseBI | AGGCCT | 2 cut(s) | 1566, 2407 |
| SsiI | CCGC | 4 cut(s) | 128, 917, 938, 2252 |
| SspI | AATATT | 2 cut(s) | 451, 2981 |
| StuI | AGGCCT | 2 cut(s) | 1566, 2407 |
| StyD4I | CCNGG | 5 cut(s) | 229, 475, 1051, 1201, 2380 |
| StyI | CCWWGG | 1 cut(s) | 2169 |
| TaaI | ACNGT | 8 cut(s) | 162, 175, 206, 733, 1156, 1750, 2584, 2670 |
| TaiI | ACGT | 2 cut(s) | 343, 1292 |
| TaqI | TCGA | 8 cut(s) | 60, 1108, 1487, 2001, 2246, 2442, 2563, 2613 |
| TatI | WGTACW | 3 cut(s) | 945, 2119, 2646 |
| TfiI | GAWTC | 3 cut(s) | 94, 1654, 1706 |
| TscAI | CASTG | 3 cut(s) | 596, 2170, 2649 |
| TseFI | GTSAC | 7 cut(s) | 711, 911, 1170, 1675, 1769, 2290, 2578 |
| TseI | GCWGC | 7 cut(s) | 130, 609, 992, 1016, 1124, 1345, 2538 |
| Tsp45I | GTSAC | 7 cut(s) | 711, 911, 1170, 1675, 1769, 2290, 2578 |
| TspGWI | ACGGA | 4 cut(s) | 102, 825, 2021, 2678 |
| TspRI | CASTG | 3 cut(s) | 596, 2170, 2649 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1483 |
| Vha464I | CTTAAG | 2 cut(s) | 2821, 2933 |
| VpaK11BI | GGWCC | 3 cut(s) | 560, 656, 1940 |
| VspI | ATTAAT | 1 cut(s) | 2297 |
| XbaI | TCTAGA | 1 cut(s) | 3188 |
| XceI | RCATGY | 4 cut(s) | 635, 1763, 1949, 3161 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 902 |
| XmiI | GTMKAC | 3 cut(s) | 164, 2330, 2613 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1653, 2043, 2808 |
| ZrmI | AGTACT | 1 cut(s) | 947 |
| Zsp2I | ATGCAT | 3 cut(s) | 637, 1002, 2895 |