Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Forward (+)

62047105 .. 62047722

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCTCCATTCCAAGCCTTATATGGAATATCCCCTCCAACCATTCAGACTTACATGCCAGGTACAACTGCAGTGCATCAAGTAGATTTGCAACTGCGAGATAGGGATGAGCTCTTAAAGATACTGCAGCACAACATACAACTTGCTCAAAACAGAATGAAGGTGTACTATGATAAGCACCACACAGAGAGAGAATTTGCAGTTGGCGATATGGTCTTTCTTAAGCTACAGCCTTACAGACAAAGCTCAATCCAGAAAAGGAAGTCACAGAAATTAGCACCGAGATATTTTGGTCCTTACCAAGTTACTGAAAAGATTGGAAAGGTTGCCTACAAGCTCCAGTTACCAGTAGGTGCTAAGATTCACCCGGTGTTCCATGTGTCGTTATTGAAGAAGAAACTTGGCAGTTCTGTCGTTCCTAGCCCACACTTTCCTCCAATATTGGATTCTGATAAATCTCATTGGTATCCTAAGAAAATTCTGGACAGGGGTATGTTTAAGAAAGGTAATTCAGCTGAGATCAAATGGTTGGTTCAATGGGAGAACTCTGTTGAGGATGATGCTACTTGGATGAACGCTGATGAGTTCATGCATAAGTTCCCAGATTTTAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

205

Amino Acids

23.88

Weight (kDa)

9.61

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	6.7e-25	Tf2-1-like, SH3 domain
Integrase_p58_C	PF22938	98 - 132	6.3e-07	Integrase p58, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	194, 477
AdeI	CACNNNGTG	1 cut(s)	370
AfaI	GTAC	2 cut(s)	64, 167
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	391, 536
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	4 cut(s)	186, 218, 430, 462
AluBI	AGCT	5 cut(s)	112, 226, 246, 337, 515
AluI	AGCT	5 cut(s)	112, 226, 246, 337, 515
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	2 cut(s)	194, 477
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	3 cut(s)	69, 125, 227
BfrI	CTTAAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	60, 368
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	2 cut(s)	60, 368
BmsI	GCATC	2 cut(s)	85, 550
BpmI	CTGGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	340, 347
BseBI	CCWGG	1 cut(s)	60
BseGI	GGATG	3 cut(s)	112, 562, 576
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	340, 347
BseXI	GCAGC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	508
BspMAI	CTGCAG	2 cut(s)	73, 129
BspTI	CTTAAG	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	340, 347
BssMI	GATC	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	221
BstDEI	CTNAG	3 cut(s)	357, 471, 516
BstF5I	GGATG	3 cut(s)	112, 562, 576
BstKTI	GATC	1 cut(s)	522
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	519
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	58, 366
BstSFI	CTRYAG	3 cut(s)	69, 125, 227
BstV1I	GCAGC	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	112, 562, 576
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	63, 166
CviAII	CATG	3 cut(s)	55, 377, 589
CviJI	RGCY	8 cut(s)	17, 112, 226, 232, 246, 337, 423, 515
CviKI_1	RGCY	8 cut(s)	17, 112, 226, 232, 246, 337, 423, 515
CviQI	GTAC	2 cut(s)	63, 166
DdeI	CTNAG	3 cut(s)	357, 471, 516
DpnI	GATC	1 cut(s)	521
DpnII	GATC	1 cut(s)	519
DraI	TTTAAA	1 cut(s)	610
DraIII	CACNNNGTG	1 cut(s)	370
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	3 cut(s)	58, 380, 592
FatI	CATG	3 cut(s)	54, 376, 588
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	3 cut(s)	119, 569, 583
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	323
HapII	CCGG	1 cut(s)	368
Hin1II	CATG	3 cut(s)	58, 380, 592
HinfI	GANTC	2 cut(s)	361, 446
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	48, 451
Hpy188III	TCNNGA	2 cut(s)	253, 482
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	154
HpyCH4V	TGCA	6 cut(s)	71, 76, 91, 127, 200, 592
HpyF3I	CTNAG	3 cut(s)	357, 471, 516
Hsp92II	CATG	3 cut(s)	58, 380, 592
Kzo9I	GATC	1 cut(s)	519
LmnI	GCTCC	1 cut(s)	342
LpnPI	CCDG	8 cut(s)	45, 72, 266, 353, 360, 381, 467, 472
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	85, 550
MaeI	CTAG	1 cut(s)	420
MaeIII	GTNAC	3 cut(s)	264, 304, 342
MalI	GATC	1 cut(s)	521
MboI	GATC	1 cut(s)	519
MboII	GAAGA	2 cut(s)	403, 406
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	4 cut(s)	194, 272, 477, 508
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	3 cut(s)	45, 444, 547
Mph1103I	ATGCAT	1 cut(s)	594
MseI	TTAA	5 cut(s)	116, 222, 498, 609, 616
MspA1I	CMGCKG	1 cut(s)	515
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	60, 368
MvaI	CCWGG	1 cut(s)	60
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	1 cut(s)	519
NlaIII	CATG	3 cut(s)	58, 380, 592
NmuCI	GTSAC	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	594
NspI	RCATGY	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	361, 446
PkrI	GCNGC	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	293
PstI	CTGCAG	2 cut(s)	73, 129
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	64, 167
RsaNI	GTAC	2 cut(s)	63, 166
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	5 cut(s)	116, 222, 498, 609, 616
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	519
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	60, 368
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	85, 550
SfcI	CTRYAG	3 cut(s)	69, 125, 227
SinI	GGWCC	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	4 cut(s)	194, 272, 477, 508
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	58, 366
TasI	AATT	4 cut(s)	194, 272, 477, 508
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	361, 446
Tru1I	TTAA	5 cut(s)	116, 222, 498, 609, 616
Tru9I	TTAA	5 cut(s)	116, 222, 498, 609, 616
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	3 cut(s)	173, 577, 587
TspRI	CASTG	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	2 cut(s)	194, 477
XceI	RCATGY	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.