Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Forward (+)

24557359 .. 24558698

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30934.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGACACCATTTCAAGCTTTGTATGGATATGAACCACCTTCTGTTAAAATCTATCTTCCAGGGTCTACATCAGTTGCTAATGTGGACCAAGACTTGAGGAATAGGGATGAGTTGTTGACAGTACTCAAGAAGAACCTGGAAAAAGCTCAATCTAGAATGAAGAAGTATTATGATTTGAAACACACTGAAAGGAAGTTTGAAGTAGGCGACTTGGTTTATTTGAAGCTCCAACCTTATAGGCACAGGCAGCAGTCAGCCCACAAAAGGGTGTTCCACAAACTCTCTGCCAAATATTTTGGTCCCTTTGAAGTTCTGGAAAAGGTGGGAAGTGTAGCTTACAAGCTCAAACTTCCAGCTTATGCAAAGATACATGATGTTTTTCATGTCTCTTTGTTAAGGAAGAAACTGGGCGCTAATGTGACAGCAGAGGCACATCTTCCCCATCTGTCTGAAGCTGGAACTGTGAAATGGGAACCTGAGGCAGTGCTGCAAACAAGATTGGTGAAGAGGAGAGGTGAGGCAGCTGCACAGTGGTTAATTAAATGGATGGGAGCTGAAGCCGAGGATGCTACTTGGGAGTTTGCAGATCACATCACCCGCAGATTTCCGGAAGCAAAGCTGCTCGATACTGGCGAGGGCAAGAAGGCTTCTGCTGAGGCCAAGAAAGAAGAGGGCGTGCCTTCTGATTTGGCGAAGAAAGCGATTGACTGCGCTTCTAATTTGGGCAACAAAGCTCGGAGTTTCGGTTTGGATTGTGCCAAGAAGGCAAAGGGGTTTAGATTCAACCAAGGGTGGCTGACTGTGTTAGTGGCGCTTGCCATTGACAATGCTTTCAGCCAATTGGCTACTGACTGGGAGCGCTGTAATCTGCAAGTCATGGCGGCAGTGATTTCGATGTTGCTAGTGCCCTATTTGTGTGCTCTGCTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

311

Amino Acids

35.02

Weight (kDa)

9.48

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 134	5.5e-22	Tf2-1-like, SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	65
AccIII	TCCGGA	1 cut(s)	607
AciI	CCGC	2 cut(s)	598, 881
AcuI	CTGAAG	2 cut(s)	471, 576
AfaI	GTAC	1 cut(s)	123
AfeI	AGCGCT	1 cut(s)	860
AfiI	CCNNNNNNNGG	2 cut(s)	264, 265
AgsI	TTSAA	6 cut(s)	14, 178, 200, 223, 308, 784
AjnI	CCWGG	2 cut(s)	58, 135
Alw21I	GWGCWC	1 cut(s)	922
Alw26I	GTCTC	1 cut(s)	391
Aor13HI	TCCGGA	1 cut(s)	607
Aor51HI	AGCGCT	1 cut(s)	860
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	5 cut(s)	247, 487, 521, 524, 619
AspLEI	GCGC	4 cut(s)	413, 713, 814, 861
AspS9I	GGNCC	2 cut(s)	85, 299
AsuHPI	GGTGA	3 cut(s)	514, 527, 586
AvaII	GGWCC	2 cut(s)	85, 299
AxyI	CCTNAGG	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	909
Bbv12I	GWGCWC	1 cut(s)	922
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	5 cut(s)	259, 474, 511, 533, 606
BccI	CCATC	2 cut(s)	450, 541
BcgI	CGANNNNNNTGC	2 cut(s)	873, 907
BciT130I	CCWGG	2 cut(s)	60, 137
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	2 cut(s)	153, 902
BfoI	RGCGCY	3 cut(s)	414, 815, 862
BglI	GCCNNNNNGGC	1 cut(s)	764
BisI	GCNGC	6 cut(s)	248, 488, 522, 525, 620, 882
BlsI	GCNGC	6 cut(s)	249, 489, 523, 526, 621, 883
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	60, 137
Bme18I	GGWCC	2 cut(s)	85, 299
BmgT120I	GGNCC	2 cut(s)	85, 299
BmiI	GGNNCC	2 cut(s)	301, 474
BmrFI	CCNGG	2 cut(s)	60, 137
BmrI	ACTGGG	2 cut(s)	416, 862
BmsI	GCATC	1 cut(s)	556
BmuI	ACTGGG	2 cut(s)	416, 862
Bpu10I	CCTNAGC	2 cut(s)	654, 926
BpuEI	CTTGAG	2 cut(s)	110, 115
BsaJI	CCNNGG	3 cut(s)	59, 561, 787
BsaWI	WCCGGW	1 cut(s)	607
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 265
Bse1I	ACTGG	3 cut(s)	411, 634, 857
Bse21I	CCTNAGG	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	607
BseBI	CCWGG	2 cut(s)	60, 137
BseDI	CCNNGG	3 cut(s)	59, 561, 787
BseGI	GGATG	3 cut(s)	112, 552, 571
BseLI	CCNNNNNNNGG	2 cut(s)	264, 265
BseMII	CTCAG	2 cut(s)	468, 645
BseNI	ACTGG	3 cut(s)	411, 634, 857
BseRI	GAGGAG	1 cut(s)	523
BseSI	GKGCMC	1 cut(s)	909
BseXI	GCAGC	5 cut(s)	259, 474, 511, 533, 606
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	1 cut(s)	659
BsiHKAI	GWGCWC	1 cut(s)	922
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	264, 265
BsmAI	GTCTC	1 cut(s)	391
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	909, 922
Bsp13I	TCCGGA	1 cut(s)	607
Bsp143I	GATC	1 cut(s)	586
BspACI	CCGC	2 cut(s)	598, 881
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	2 cut(s)	469, 646
BspEI	TCCGGA	1 cut(s)	607
BspLI	GGNNCC	2 cut(s)	301, 474
BsrI	ACTGG	3 cut(s)	411, 634, 857
BssECI	CCNNGG	3 cut(s)	59, 561, 787
BssMI	GATC	1 cut(s)	586
BssT1I	CCWWGG	1 cut(s)	787
Bst2UI	CCWGG	2 cut(s)	60, 137
Bst4CI	ACNGT	4 cut(s)	121, 463, 531, 802
Bst6I	CTCTTC	2 cut(s)	500, 663
BstC8I	GCNNGC	2 cut(s)	677, 816
BstDEI	CTNAG	3 cut(s)	477, 654, 926
BstF5I	GGATG	3 cut(s)	112, 552, 571
BstH2I	RGCGCY	3 cut(s)	414, 815, 862
BstHHI	GCGC	4 cut(s)	413, 713, 814, 861
BstKTI	GATC	1 cut(s)	589
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	586
BstMWI	GCNNNNNNNGC	4 cut(s)	247, 566, 698, 764
BstNI	CCWGG	2 cut(s)	60, 137
BstSCI	CCNGG	2 cut(s)	58, 135
BstSLI	GKGCMC	1 cut(s)	909
BstV1I	GCAGC	5 cut(s)	259, 474, 511, 533, 606
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	659
BtsCI	GGATG	3 cut(s)	112, 552, 571
BtsI	GCAGTG	2 cut(s)	489, 891
BtsIMutI	CAGTG	4 cut(s)	183, 489, 536, 891
Cac8I	GCNNGC	2 cut(s)	677, 816
CfoI	GCGC	4 cut(s)	413, 713, 814, 861
Cfr13I	GGNCC	2 cut(s)	85, 299
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	3 cut(s)	371, 383, 877
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	3 cut(s)	477, 654, 926
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
Eam1104I	CTCTTC	2 cut(s)	500, 663
EarI	CTCTTC	2 cut(s)	500, 663
Eco130I	CCWWGG	1 cut(s)	787
Eco47I	GGWCC	2 cut(s)	85, 299
Eco47III	AGCGCT	1 cut(s)	860
Eco57I	CTGAAG	2 cut(s)	471, 576
Eco81I	CCTNAGG	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	58, 135
EcoT14I	CCWWGG	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	787
FaeI	CATG	3 cut(s)	374, 386, 880
FaiI	YATR	8 cut(s)	24, 30, 171, 237, 360, 372, 384, 878
FalI	AAGNNNNNCTT	2 cut(s)	319, 351
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	3 cut(s)	370, 382, 876
FauI	CCCGC	1 cut(s)	605
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	6 cut(s)	248, 488, 522, 525, 620, 882
FokI	GGATG	3 cut(s)	119, 559, 578
Fsp4HI	GCNGC	6 cut(s)	248, 488, 522, 525, 620, 882
FspBI	CTAG	2 cut(s)	153, 902
GlaI	GCGC	4 cut(s)	412, 712, 813, 860
GluI	GCNGC	6 cut(s)	248, 488, 522, 525, 620, 882
HaeII	RGCGCY	3 cut(s)	414, 815, 862
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	1 cut(s)	608
HhaI	GCGC	4 cut(s)	413, 713, 814, 861
Hin1II	CATG	3 cut(s)	374, 386, 880
Hin6I	GCGC	4 cut(s)	411, 711, 812, 859
HinP1I	GCGC	4 cut(s)	411, 711, 812, 859
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	1 cut(s)	780
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	3 cut(s)	514, 527, 586
Hpy166II	GTNNAC	3 cut(s)	66, 85, 117
Hpy188I	TCNGA	3 cut(s)	451, 685, 738
Hpy188III	TCNNGA	4 cut(s)	127, 153, 314, 608
Hpy8I	GTNNAC	3 cut(s)	66, 85, 117
HpyAV	CCTTC	4 cut(s)	48, 637, 690, 757
HpyCH4III	ACNGT	4 cut(s)	121, 463, 531, 802
HpyCH4V	TGCA	5 cut(s)	362, 490, 527, 584, 871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	247, 566, 698, 764
HpyF3I	CTNAG	3 cut(s)	477, 654, 926
Hsp92II	CATG	3 cut(s)	374, 386, 880
HspAI	GCGC	4 cut(s)	411, 711, 812, 859
Kpn2I	TCCGGA	1 cut(s)	607
Kzo9I	GATC	1 cut(s)	586
LmnI	GCTCC	3 cut(s)	231, 551, 856
Lsp1109I	GCAGC	5 cut(s)	259, 474, 511, 533, 606
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	2 cut(s)	153, 902
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	1 cut(s)	588
MboI	GATC	1 cut(s)	586
MboII	GAAGA	8 cut(s)	47, 142, 172, 412, 428, 517, 680, 706
MfeI	CAATTG	1 cut(s)	839
MhlI	GDGCHC	2 cut(s)	909, 922
MluCI	AATT	3 cut(s)	537, 718, 839
MmeI	TCCRAC	1 cut(s)	253
MroI	TCCGGA	1 cut(s)	607
MseI	TTAA	4 cut(s)	45, 395, 536, 540
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	60, 137
MunI	CAATTG	1 cut(s)	839
MvaI	CCWGG	2 cut(s)	60, 137
MwoI	GCNNNNNNNGC	4 cut(s)	247, 566, 698, 764
NdeII	GATC	1 cut(s)	586
NlaIII	CATG	3 cut(s)	374, 386, 880
NlaIV	GGNNCC	2 cut(s)	301, 474
NmeAIII	GCCGAG	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	418
PacI	TTAATTAA	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	780
PkrI	GCNGC	6 cut(s)	249, 489, 523, 526, 621, 883
Psp6I	CCWGG	2 cut(s)	58, 135
PspGI	CCWGG	2 cut(s)	58, 135
PspN4I	GGNNCC	2 cut(s)	301, 474
PspPI	GGNCC	2 cut(s)	85, 299
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SaqAI	TTAA	4 cut(s)	45, 395, 536, 540
SatI	GCNGC	6 cut(s)	248, 488, 522, 525, 620, 882
Sau3AI	GATC	1 cut(s)	586
Sau96I	GGNCC	2 cut(s)	85, 299
ScaI	AGTACT	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	60, 137
SduI	GDGCHC	2 cut(s)	909, 922
SfaNI	GCATC	1 cut(s)	556
SinI	GGWCC	2 cut(s)	85, 299
SmlI	CTYRAG	2 cut(s)	94, 125
SmoI	CTYRAG	2 cut(s)	94, 125
Sse9I	AATT	3 cut(s)	537, 718, 839
SsiI	CCGC	2 cut(s)	598, 881
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	2 cut(s)	153, 902
StyD4I	CCNGG	2 cut(s)	58, 135
StyI	CCWWGG	1 cut(s)	787
TaaI	ACNGT	4 cut(s)	121, 463, 531, 802
TaqI	TCGA	2 cut(s)	624, 893
TasI	AATT	3 cut(s)	537, 718, 839
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	1 cut(s)	780
Tru1I	TTAA	4 cut(s)	45, 395, 536, 540
Tru9I	TTAA	4 cut(s)	45, 395, 536, 540
TscAI	CASTG	4 cut(s)	190, 489, 536, 891
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	5 cut(s)	247, 487, 521, 524, 619
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	45, 173, 371
TspRI	CASTG	4 cut(s)	190, 489, 536, 891
VpaK11BI	GGWCC	2 cut(s)	85, 299
XbaI	TCTAGA	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	2 cut(s)	153, 902
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.