Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Reverse (-)

38763211 .. 38764789

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52751.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGACTGGAGTGTCATCACCAGTTCATGACTATGTGCTGGAAATTCAGAAGGCATGTGAGAGGGATGCTGAAACTCTTTCAATCTTACAACAGCTAAGGGAAGGTACAAATCCTCCAAGGTCTTTTACTCAACTTCACTCTCAGTTATTATATAAGGGCAGGATCTTTGTGCCACAGTTGGATAATTGGAGACAAAAGGTTATTGTTGAGTTTCATGAAGGGTATAATGAGGGGCATGCTGGTGTTGCAAGAACCCATAAGAGAATGTTCAGGTCTTTTGCTTGGCCTGGTATGAAAGGAGATATTAAGTCTGTGGTTTCTACTTGTCACATTTGTCAGCAGAATCACTATGAGACAGTCAATCCTCCAGGGTTGTTGCAACCAAATGTGATACCGGACAAAGCTTGGACTCAAATCTCTATGGATTTCATTGAAGGCCTTCCAAAGTCAGCTGGAAAAACAGTACTCTTGGTGGTGGTTGATAGATTGACCAAGTATGGTCACTTTATACCAATGTCACACCCTTATACAGCTTCTACTGTGGCTCAACACTTTGTGAAGGAAGTTTTTCGACTACATGGAATGCCAGAATCTATCATATCTGATAGGGATCCAATCTTTCTCAGCAAATTTTGGGAAGCATTCTTCACCTTACAGGGAACTACTTTAAACAAAAGCTCCTCTTACCACCCACAAAGTGATGGCCAAACTGAGAACCTGAATAGGACAGTGGAGCAGTACCTCAGGTGTGTGGTTGGAGAAAGACCAAGTTCTTGGGTTGAAGCCATACCATGGGCTGCGTACTGGTACAACTCAGCTCATCATTCAGCCATTGGCATGACTCCATTTAAAGCTCTATATGGATATGAAGCTCCAGCTGTGAAAGCTTATGAGGTGCTATGCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

303

Amino Acids

34.34

Weight (kDa)

7.73

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Integrase_H2C2	PF17921	63 - 116	4.9e-16	Integrase zinc binding domain
rve	PF00665	137 - 231	4.6e-07	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	792
AclWI	GGATC	3 cut(s)	170, 605, 618
AcoI	YGGCCR	1 cut(s)	703
AcsI	RAATTY	2 cut(s)	42, 629
AcvI	CACGTG	1 cut(s)	906
AdeI	CACNNNGTG	2 cut(s)	556, 698
AfaI	GTAC	5 cut(s)	106, 465, 740, 803, 809
AfiI	CCNNNNNNNGG	1 cut(s)	792
AgsI	TTSAA	3 cut(s)	81, 434, 782
AjnI	CCWGG	2 cut(s)	286, 367
Alw26I	GTCTC	2 cut(s)	184, 347
AlwI	GGATC	3 cut(s)	170, 605, 618
AoxI	GGCC	3 cut(s)	284, 436, 703
ApeKI	GCWGC	1 cut(s)	797
ApoI	RAATTY	2 cut(s)	42, 629
Asp700I	GAANNNNTTC	2 cut(s)	438, 567
AsuHPI	GGTGA	2 cut(s)	9, 640
AxyI	CCTNAGG	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	705
BamHI	GGATCC	1 cut(s)	610
BbrPI	CACGTG	1 cut(s)	906
BbvI	GCAGC	1 cut(s)	784
BccI	CCATC	1 cut(s)	695
BciT130I	CCWGG	2 cut(s)	288, 369
BcoDI	GTCTC	2 cut(s)	184, 347
BisI	GCNGC	1 cut(s)	798
BlsI	GCNGC	1 cut(s)	799
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	2 cut(s)	288, 369
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	2 cut(s)	288, 369
BmsI	GCATC	1 cut(s)	55
BpmI	CTGGAG	3 cut(s)	27, 351, 858
Bpu10I	CCTNAGC	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	906
BsaBI	GATNNNNATC	1 cut(s)	609
BsaJI	CCNNGG	3 cut(s)	116, 368, 791
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 662, 692
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse1I	ACTGG	3 cut(s)	10, 20, 809
Bse21I	CCTNAGG	1 cut(s)	743
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	288, 369
BseDI	CCNNGG	3 cut(s)	116, 368, 791
BseGI	GGATG	1 cut(s)	70
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseMII	CTCAG	5 cut(s)	155, 637, 702, 757, 828
BseNI	ACTGG	3 cut(s)	10, 20, 809
BseRI	GAGGAG	1 cut(s)	670
BseXI	GCAGC	1 cut(s)	784
BshFI	GGCC	3 cut(s)	286, 438, 705
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	792
BsmAI	GTCTC	2 cut(s)	184, 347
BsmI	GAATGC	2 cut(s)	588, 641
BsnI	GGCC	3 cut(s)	286, 438, 705
Bsp143I	GATC	2 cut(s)	162, 610
Bsp19I	CCATGG	1 cut(s)	791
BspANI	GGCC	3 cut(s)	286, 438, 705
BspCNI	CTCAG	5 cut(s)	154, 636, 703, 756, 827
BspHI	TCATGA	2 cut(s)	25, 214
BspLI	GGNNCC	1 cut(s)	612
BspPI	GGATC	3 cut(s)	170, 605, 618
BsrI	ACTGG	3 cut(s)	10, 20, 809
BssECI	CCNNGG	3 cut(s)	116, 368, 791
BssMI	GATC	2 cut(s)	162, 610
BssT1I	CCWWGG	2 cut(s)	116, 791
Bst2UI	CCWGG	2 cut(s)	288, 369
Bst4CI	ACNGT	5 cut(s)	177, 358, 463, 541, 730
BstBAI	YACGTR	1 cut(s)	906
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	6 cut(s)	95, 141, 623, 711, 743, 814
BstDSI	CCRYGG	1 cut(s)	791
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	165, 613
BstMAI	GTCTC	2 cut(s)	184, 347
BstMBI	GATC	2 cut(s)	162, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 884
BstNI	CCWGG	2 cut(s)	288, 369
BstNSI	RCATGY	2 cut(s)	57, 239
BstSCI	CCNGG	2 cut(s)	286, 367
BstV1I	GCAGC	1 cut(s)	784
BstX2I	RGATCY	2 cut(s)	162, 610
BstXI	CCANNNNNNTGG	1 cut(s)	774
BstYI	RGATCY	2 cut(s)	162, 610
Bsu36I	CCTNAGG	1 cut(s)	743
BsuRI	GGCC	3 cut(s)	286, 438, 705
BtgI	CCRYGG	1 cut(s)	791
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	1 cut(s)	237
CciI	TCATGA	2 cut(s)	25, 214
Csp6I	GTAC	5 cut(s)	105, 464, 739, 802, 808
CviAII	CATG	7 cut(s)	26, 54, 215, 236, 578, 792, 838
CviQI	GTAC	5 cut(s)	105, 464, 739, 802, 808
DdeI	CTNAG	6 cut(s)	95, 141, 623, 711, 743, 814
DpnI	GATC	2 cut(s)	164, 612
DpnII	GATC	2 cut(s)	162, 610
DraI	TTTAAA	2 cut(s)	669, 850
DraIII	CACNNNGTG	2 cut(s)	556, 698
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	703
Eco130I	CCWWGG	2 cut(s)	116, 791
Eco147I	AGGCCT	1 cut(s)	438
Eco72I	CACGTG	1 cut(s)	906
Eco81I	CCTNAGG	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	286, 367
EcoT14I	CCWWGG	2 cut(s)	116, 791
ErhI	CCWWGG	2 cut(s)	116, 791
FaeI	CATG	7 cut(s)	29, 57, 218, 239, 581, 795, 841
FalI	AAGNNNNNCTT	2 cut(s)	667, 699
FatI	CATG	7 cut(s)	25, 53, 214, 235, 577, 791, 837
Fnu4HI	GCNGC	1 cut(s)	798
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	798
GluI	GCNGC	1 cut(s)	798
GsuI	CTGGAG	3 cut(s)	27, 351, 858
HaeIII	GGCC	3 cut(s)	286, 438, 705
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	7 cut(s)	29, 57, 218, 239, 581, 795, 841
HindIII	AAGCTT	2 cut(s)	402, 885
HinfI	GANTC	4 cut(s)	343, 409, 590, 841
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	2 cut(s)	9, 640
Hpy188I	TCNGA	2 cut(s)	48, 604
Hpy188III	TCNNGA	2 cut(s)	26, 215
HpyAV	CCTTC	6 cut(s)	43, 95, 212, 428, 449, 553
HpyCH4III	ACNGT	5 cut(s)	177, 358, 463, 541, 730
HpyCH4IV	ACGT	1 cut(s)	905
HpyCH4V	TGCA	3 cut(s)	248, 379, 903
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 884
HpyF3I	CTNAG	6 cut(s)	95, 141, 623, 711, 743, 814
HpySE526I	ACGT	1 cut(s)	905
Hsp92II	CATG	7 cut(s)	29, 57, 218, 239, 581, 795, 841
Kzo9I	GATC	2 cut(s)	162, 610
LmnI	GCTCC	3 cut(s)	683, 733, 877
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	905
MaeIII	GTNAC	3 cut(s)	326, 500, 516
MalI	GATC	2 cut(s)	164, 612
MboI	GATC	2 cut(s)	162, 610
MboII	GAAGA	1 cut(s)	637
MflI	RGATCY	2 cut(s)	162, 610
MlsI	TGGCCA	1 cut(s)	705
MluCI	AATT	3 cut(s)	42, 184, 629
MluNI	TGGCCA	1 cut(s)	705
MlyI	GAGTC	2 cut(s)	403, 835
MmeI	TCCRAC	2 cut(s)	159, 736
MnlI	CCTC	7 cut(s)	54, 123, 223, 375, 691, 752, 886
Mox20I	TGGCCA	1 cut(s)	705
MroXI	GAANNNNTTC	2 cut(s)	438, 567
MscI	TGGCCA	1 cut(s)	705
MseI	TTAA	3 cut(s)	306, 668, 849
MslI	CAYNNNNRTG	3 cut(s)	30, 240, 836
Msp20I	TGGCCA	1 cut(s)	705
MspA1I	CMGCKG	2 cut(s)	452, 878
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	288, 369
Mva1269I	GAATGC	2 cut(s)	588, 641
MvaI	CCWGG	2 cut(s)	288, 369
MwoI	GCNNNNNNNGC	2 cut(s)	245, 884
NcoI	CCATGG	1 cut(s)	791
NdeII	GATC	2 cut(s)	162, 610
NlaIII	CATG	7 cut(s)	29, 57, 218, 239, 581, 795, 841
NlaIV	GGNNCC	1 cut(s)	612
NmuCI	GTSAC	3 cut(s)	326, 500, 516
NspI	RCATGY	2 cut(s)	57, 239
PaeI	GCATGC	1 cut(s)	239
PagI	TCATGA	2 cut(s)	25, 214
PceI	AGGCCT	1 cut(s)	438
PctI	GAATGC	2 cut(s)	588, 641
PdmI	GAANNNNTTC	2 cut(s)	438, 567
PfeI	GAWTC	2 cut(s)	343, 590
PflMI	CCANNNNNTGG	1 cut(s)	792
PkrI	GCNGC	1 cut(s)	799
PleI	GAGTC	2 cut(s)	403, 835
PmaCI	CACGTG	1 cut(s)	906
PmlI	CACGTG	1 cut(s)	906
PpsI	GAGTC	2 cut(s)	403, 835
Ppu21I	YACGTR	1 cut(s)	906
Psp6I	CCWGG	2 cut(s)	286, 367
PspCI	CACGTG	1 cut(s)	906
PspGI	CCWGG	2 cut(s)	286, 367
PspN4I	GGNNCC	1 cut(s)	612
PsuI	RGATCY	2 cut(s)	162, 610
PvuII	CAGCTG	2 cut(s)	452, 878
RsaI	GTAC	5 cut(s)	106, 465, 740, 803, 809
RsaNI	GTAC	5 cut(s)	105, 464, 739, 802, 808
RseI	CAYNNNNRTG	3 cut(s)	30, 240, 836
SaqAI	TTAA	3 cut(s)	306, 668, 849
SatI	GCNGC	1 cut(s)	798
Sau3AI	GATC	2 cut(s)	162, 610
ScaI	AGTACT	1 cut(s)	465
SchI	GAGTC	2 cut(s)	403, 835
ScrFI	CCNGG	2 cut(s)	288, 369
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	3 cut(s)	30, 240, 836
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	3 cut(s)	42, 184, 629
SseBI	AGGCCT	1 cut(s)	438
StuI	AGGCCT	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	286, 367
StyI	CCWWGG	2 cut(s)	116, 791
TaaI	ACNGT	5 cut(s)	177, 358, 463, 541, 730
TaiI	ACGT	1 cut(s)	908
TaqI	TCGA	1 cut(s)	571
TasI	AATT	3 cut(s)	42, 184, 629
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	2 cut(s)	343, 590
Tru1I	TTAA	3 cut(s)	306, 668, 849
Tru9I	TTAA	3 cut(s)	306, 668, 849
TscAI	CASTG	1 cut(s)	735
TseFI	GTSAC	3 cut(s)	326, 500, 516
TseI	GCWGC	1 cut(s)	797
Tsp45I	GTSAC	3 cut(s)	326, 500, 516
TspDTI	ATGAA	6 cut(s)	14, 203, 231, 308, 418, 882
TspRI	CASTG	1 cut(s)	735
Van91I	CCANNNNNTGG	1 cut(s)	792
XapI	RAATTY	2 cut(s)	42, 629
XceI	RCATGY	2 cut(s)	57, 239
XmnI	GAANNNNTTC	2 cut(s)	438, 567
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.