Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Forward (+)

21639001 .. 21639767

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG229300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTCTCTCTCTCTCTCAAATCCCTCCATAAAACTCTCACATCTCTCTTTCTCACCAGAGCCAAACTTAGAAGCGCTTCCCCTAATGGGATCGAGGTGCCGAAGCTGGCCTGGTCTCACCTACCGAACTTGGATGAAGCCGAGAACGACGTCGTTGGGTTAAGGAAGAAGGACGATGGCGGCGCCGGGATCGGAGCTGGAATTGGGATTGGGGAACTGGAGCGGGGATTTGTGGGACATGATGATGTCGATCGGAACTCAATCATCGTCGCTGCCTATTGTAATTATGGTGAGATTGAGAAACGAAAACAGAGGGAGATGGAAGGCAAAGAATTCAACGGTGGTGGTAGTAAGAAGAACCTGCAGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

123

Amino Acids

13.43

Weight (kDa)

8.73

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccB1I	GGYRCC	2 cut(s)	97, 182
AccBSI	CCGCTC	1 cut(s)	223
AciI	CCGC	3 cut(s)	180, 223, 367
AclWI	GGATC	2 cut(s)	98, 197
AcsI	RAATTY	1 cut(s)	332
AcyI	GRCGYC	2 cut(s)	150, 183
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	106, 197
AluI	AGCT	2 cut(s)	106, 197
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	98, 197
Aor51HI	AGCGCT	1 cut(s)	76
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	272, 364
ApoI	RAATTY	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	76
AspLEI	GCGC	2 cut(s)	77, 185
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	3 cut(s)	46, 110, 302
BanI	GGYRCC	2 cut(s)	97, 182
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	2 cut(s)	170, 313
BciT130I	CCWGG	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	362
BfoI	RGCGCY	2 cut(s)	78, 186
BisI	GCNGC	3 cut(s)	181, 273, 365
BlsI	GCNGC	3 cut(s)	182, 274, 366
Bme1390I	CCNGG	2 cut(s)	112, 187
BmiI	GGNNCC	2 cut(s)	99, 184
BmrFI	CCNGG	2 cut(s)	112, 187
BpmI	CTGGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	2 cut(s)	150, 183
BsaI	GGTCTC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	110
BshNI	GGYRCC	2 cut(s)	97, 182
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	110
Bso31I	GGTCTC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	90, 189, 250
BspACI	CCGC	3 cut(s)	180, 223, 367
BspANI	GGCC	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	99, 184
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	2 cut(s)	98, 197
BspT107I	GGYRCC	2 cut(s)	97, 182
BspTNI	GGTCTC	1 cut(s)	120
BsrBI	CCGCTC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	90, 189, 250
BssNI	GRCGYC	2 cut(s)	150, 183
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	341
BstACI	GRCGYC	2 cut(s)	150, 183
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	2 cut(s)	78, 186
BstHHI	GCGC	2 cut(s)	77, 185
BstKTI	GATC	3 cut(s)	93, 192, 253
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	3 cut(s)	90, 189, 250
BstMCI	CGRYCG	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	110, 185
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	2 cut(s)	77, 185
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	5 cut(s)	62, 106, 110, 140, 197
CviKI_1	RGCY	5 cut(s)	62, 106, 110, 140, 197
DdeI	CTNAG	1 cut(s)	68
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	3 cut(s)	92, 191, 252
DpnII	GATC	3 cut(s)	90, 189, 250
Eco31I	GGTCTC	1 cut(s)	120
Eco47III	AGCGCT	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	110
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
FaeI	CATG	1 cut(s)	242
FaiI	YATR	3 cut(s)	30, 240, 288
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	1 cut(s)	238
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	181, 273, 365
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	181, 273, 365
GlaI	GCGC	2 cut(s)	76, 184
GluI	GCNGC	3 cut(s)	181, 273, 365
GsuI	CTGGAG	1 cut(s)	239
HaeII	RGCGCY	2 cut(s)	78, 186
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	2 cut(s)	77, 185
Hin1I	GRCGYC	2 cut(s)	150, 183
Hin1II	CATG	1 cut(s)	242
Hin6I	GCGC	2 cut(s)	75, 183
HinP1I	GCGC	2 cut(s)	75, 183
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	3 cut(s)	46, 110, 302
Hpy188I	TCNGA	2 cut(s)	194, 255
Hpy99I	CGWCG	3 cut(s)	152, 155, 272
HpyAV	CCTTC	2 cut(s)	163, 317
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	364
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	150, 183
Hsp92II	CATG	1 cut(s)	242
HspAI	GCGC	2 cut(s)	75, 183
KasI	GGCGCC	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	90, 189, 250
LmnI	GCTCC	2 cut(s)	194, 220
LpnPI	CCDG	7 cut(s)	70, 92, 97, 124, 183, 199, 203
Lsp1109I	GCAGC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	150
MalI	GATC	3 cut(s)	92, 191, 252
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	3 cut(s)	90, 189, 250
MboII	GAAGA	2 cut(s)	178, 367
MluCI	AATT	3 cut(s)	201, 283, 332
Mly113I	GGCGCC	1 cut(s)	183
MnlI	CCTC	3 cut(s)	35, 88, 306
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	2 cut(s)	112, 187
MvaI	CCWGG	1 cut(s)	112
NarI	GGCGCC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	90, 189, 250
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	2 cut(s)	99, 184
NmeAIII	GCCGAG	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	182, 274, 366
Ple19I	CGATCG	1 cut(s)	253
PluTI	GGCGCC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	99, 184
PstI	CTGCAG	1 cut(s)	366
PvuI	CGATCG	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	3 cut(s)	181, 273, 365
Sau3AI	GATC	3 cut(s)	90, 189, 250
ScrFI	CCNGG	2 cut(s)	112, 187
SetI	ASST	6 cut(s)	99, 108, 123, 153, 199, 363
SfcI	CTRYAG	1 cut(s)	362
SfoI	GGCGCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	3 cut(s)	201, 283, 332
SsiI	CCGC	3 cut(s)	180, 223, 367
SspDI	GGCGCC	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	110, 185
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	93, 249
TasI	AATT	3 cut(s)	201, 283, 332
TauI	GCSGC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TseI	GCWGC	2 cut(s)	272, 364
TspDTI	ATGAA	1 cut(s)	150
XapI	RAATTY	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	76
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.