Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Forward (+)

9261531 .. 9262040

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08682.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAAGCTTATTATGACAGGAACCACACTGAGTGTCAGTTTCAAGTTGGGGACTGGGTTTATGTGAAACTCCAGCCTTACAAGCAAACTTCAGTGAGTACCACATCATTCCACAAGTTAGCTTCAAGGTATTATGCTTCAGTGAGTACCACATCATTCCACAAGTTAGCTTCAAGGTATTATGGTCTGTTTCAGGTACTTGAGAGAATTGGAGTGGTGGCGTACAAGTTACAACTCCCAGCCACAGCAAGAATCCATAATGTTTTTCATGTTTCCCTTCTGAAAAAGAGAGTGGGACATGATGCTACAGTTGAGGCCACACTTCCTAACATCAGTGACTCATCAGCCTTCAAATGGGTTCTAGAAGAGATACTACAGATCAGAATGATCAAGCACAAGGGAGCAGCAGCAACGCAATGGTTAATCCATTGGTTGGGAACTTCGAAGGAAGAGGCCACTTGGGAGTTTGCAGAGGACATTATGCAGAGGTATCCAGACTTTCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

170

Amino Acids

19.68

Weight (kDa)

9.25

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	53 - 96	3e-18	Tf2-1-like, SH3 domain
Chromo	PF00385	120 - 165	1.6e-06	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	75, 123
AdeI	CACNNNGTG	1 cut(s)	33
AfaI	GTAC	4 cut(s)	100, 148, 198, 224
AfiI	CCNNNNNNNGG	2 cut(s)	354, 433
AgsI	TTSAA	4 cut(s)	44, 126, 174, 352
AluBI	AGCT	3 cut(s)	8, 122, 170
AluI	AGCT	3 cut(s)	8, 122, 170
AoxI	GGCC	2 cut(s)	315, 453
ApeKI	GCWGC	2 cut(s)	404, 407
AsuII	TTCGAA	1 cut(s)	443
BarI	GAAGNNNNNNTAC	2 cut(s)	357, 389
BbvI	GCAGC	2 cut(s)	416, 419
BciVI	GTATCC	1 cut(s)	501
BclI	TGATCA	1 cut(s)	387
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	2 cut(s)	306, 374
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	2 cut(s)	405, 408
BlsI	GCNGC	2 cut(s)	406, 409
BmiI	GGNNCC	1 cut(s)	23
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	2 cut(s)	354, 433
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	2 cut(s)	354, 433
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	416, 419
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	2 cut(s)	317, 455
BslFI	GGGAC	2 cut(s)	65, 309
BslI	CCNNNNNNNGG	2 cut(s)	354, 433
BsmFI	GGGAC	2 cut(s)	65, 309
BsnI	GGCC	2 cut(s)	317, 455
Bsp119I	TTCGAA	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	378, 387
BspANI	GGCC	2 cut(s)	317, 455
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	23
BspT104I	TTCGAA	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	378, 387
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	2 cut(s)	360, 444
BstBI	TTCGAA	1 cut(s)	443
BstDEI	CTNAG	1 cut(s)	30
BstKTI	GATC	2 cut(s)	381, 390
BstMBI	GATC	2 cut(s)	378, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstSFI	CTRYAG	2 cut(s)	306, 374
BstV1I	GCAGC	2 cut(s)	416, 419
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	317, 455
BtsIMutI	CAGTG	4 cut(s)	27, 99, 147, 340
Csp6I	GTAC	4 cut(s)	99, 147, 197, 223
CviAII	CATG	2 cut(s)	269, 299
CviJI	RGCY	8 cut(s)	8, 76, 122, 170, 242, 317, 347, 455
CviKI_1	RGCY	8 cut(s)	8, 76, 122, 170, 242, 317, 347, 455
CviQI	GTAC	4 cut(s)	99, 147, 197, 223
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	2 cut(s)	380, 389
DpnII	GATC	2 cut(s)	378, 387
DraIII	CACNNNGTG	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	360, 444
EarI	CTCTTC	2 cut(s)	360, 444
Eco57I	CTGAAG	2 cut(s)	75, 123
FaeI	CATG	2 cut(s)	272, 302
FaiI	YATR	8 cut(s)	15, 63, 135, 183, 258, 270, 300, 482
FaqI	GGGAC	2 cut(s)	65, 309
FatI	CATG	2 cut(s)	268, 298
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	405, 408
Fsp4HI	GCNGC	2 cut(s)	405, 408
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	2 cut(s)	405, 408
GsaI	CCCAGC	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	317, 455
Hin1II	CATG	2 cut(s)	272, 302
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	2 cut(s)	252, 338
Hpy188I	TCNGA	2 cut(s)	282, 383
Hpy188III	TCNNGA	2 cut(s)	362, 494
HpyAV	CCTTC	3 cut(s)	287, 358, 439
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	470, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	272, 302
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	378, 387
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	5 cut(s)	4, 40, 86, 179, 252
Lsp1109I	GCAGC	2 cut(s)	416, 419
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	228, 335
MalI	GATC	2 cut(s)	380, 389
MboI	GATC	2 cut(s)	378, 387
MboII	GAAGA	2 cut(s)	377, 461
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	4 cut(s)	307, 445, 466, 480
MseI	TTAA	2 cut(s)	422, 508
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	2 cut(s)	378, 387
NlaIII	CATG	2 cut(s)	272, 302
NlaIV	GGNNCC	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	335
NspV	TTCGAA	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	406, 409
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	23
RsaI	GTAC	4 cut(s)	100, 148, 198, 224
RsaNI	GTAC	4 cut(s)	99, 147, 197, 223
SaqAI	TTAA	2 cut(s)	422, 508
SatI	GCNGC	2 cut(s)	405, 408
Sau3AI	GATC	2 cut(s)	378, 387
SchI	GAGTC	1 cut(s)	332
SetI	ASST	7 cut(s)	10, 124, 131, 172, 179, 198, 491
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	2 cut(s)	306, 374
SfuI	TTCGAA	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	443
TasI	AATT	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	422, 508
Tru9I	TTAA	2 cut(s)	422, 508
TscAI	CASTG	4 cut(s)	34, 99, 147, 340
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	404, 407
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	17, 257
TspRI	CASTG	4 cut(s)	34, 99, 147, 340
Van91I	CCANNNNNTGG	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	361
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.