RchiOBHm_Chr6g0286171

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000756
Physical Location & Seq
Reverse (-)
49501890 .. 49504805
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25670

Sequence Viewer

Length: 2574 bp
ATGGGCAAATTGAAGGGGGGTGGGAAACCCCCATCCGATGACCCTCACGTTTCCGGTGAGCTATCTCACTTGGAATTCGAGCTTCAGGTCCATCGTGATGAAACCAGTGCGCGGTTAGATGCGATGCAGGCTTCCCTCCATGATTCTATGGCCACCACTCTGGCTAGCTTCAAAGCCTTGTTGATGGATGAATTTAAACAGCAGCTCTCTAATTTCACCAAAGAAAGCTCGGGGACCCAACCACAATCCACACCACTCATTCCGAGTAGCACAGCAATCCCTCAACCTGATGGATCTGTGAAATTTGGGTCTCTATCTTCTCCCATTGACCACTTGGTTCCAGTCCCGACAACGGAGGAGTCCTCTTCAGTGGTGGTGAGATCTGAGGGTAATTTCGCACACCTCCCTCTTGTTACATCTTCCTCCTACAGTAATGCTAATGATGTGATATTGTACACCACAAATCCCATGACTACTCAAGCTGTGAACATGCATATGAATGCAATTGCTCCTAATTATGGCGAGAAGGACAAAGGAGTAGTACCTAACATGCTTGGTCTTAAGTCAGTGGGAAATATTTATTGTGATATCCCTCCACAGTTTGATACTGTTTGCCATGGGGCTCCACTTCAATTCCCTCAGTCCGGTACTGCATGTCCTGCATCACATGCTTCTTCTTTGGTTTTGCAGGATAATAACCCCTTTGTCATGACATATTCTGGGCCTTATTCTATTACTATGCATCATGTCCCTTCAAAACCCCCTCCACTTTCCAGTAGTCATAATCAGTCACAAGCTAAAGGCACCTCACCTTTCATTAGTACCAATGCTTTACCTACTATGACCTCACCTTTCATTGGTACCAATGCTTTACATACTATGGCCACAACCACCACCACCCATATGTTCCACCCACCTCCATACTTCTCTCACGTTTCCACACCCTTTTATCAACCTAATTTCCCTGTTCAAATGGGCCACCCTCATCCCCAATTTCAGAATCACTTGTTCCAACCCCCACATGTGGATCCCAATTTACCTACTATGAAACAAATGCTGTTGGAATTTAGTGTATACGGTGGAGGAGATCCAGTGGAATGGTTAAACAAGGCTGACCAATATTTTGAGTTTTATCAAATACCAGAAGATAGGAAGCTCTCAATTGCTACCATGCACTTAACTGATAAAGCTTATGATCGATGGTATATGTTCAGGCATGAATTCCCTAACACTTGGCAGGGACTTGCTGACCTCTTGATGAGAGAGTTTAGTGGTTACAATAGGTCTAAATATCAGGCTGCTTTGGTTAGAATGAATCAAACTGGAAGTGTAGAACTCTATAAAGAGCAGTTTACAAAATTGTCTAGGAGATGCCCTGGGTTTCCACCAGAGGTACTCCTCTCCTGCTTCATTGGTGGACTTAAGGAGGACATAAGAGTGGATGTGCAAGCACAAAAACCACGATCCCTGTATGAGGCTTGTGAACTAGCTAGAGTTTATGAGACACGAAATGAAGGACATAGAAATTCTCTTAAGGGTTGTCACTCACATAGCACTCATAAGGCTACTGTGACTCCTTACTCTCCCAATGCTCACAAGTCCACTTCAATTAATCATCAAGCCAAATCCACAGGTCCTGTATTCACTTCCAGAGCAGGTCATACCAGTAGTGGAAGTAGGAAACTGTCAGAAGCTGAATATGAGGCTAGAAGAGCCAGAAATCAATGTTTTTTCTGTGAAGAGCCATATAAGCCGAGACAAAACTGTAGAAAAAAGGGGCAGTTGATGGTAATGGAGATTGTCCCTGCTGAGAGTGAACTAGCTGACCCCACTGATGACACTCAACTATTGGAAGTTCCCCCTATTATTGACTTGGATGAACCCCTGATTAGACTACAAGTCATGGGTGATAACCACTCCAAAGCCGCCACTATGCAGGTTAAAGGCAGATTTCATGGGAGAACAGTTCATGTTCTGATTAATTCTGGGGCAACGCATAATTTTATCCATCCACACTTGCTTAGGGGCACTAAAGTGCACGTTCATCACTTACCTCCACTGAATGTTATCTTGGCAAGTGGGGCCAAAATGAAAACACAAGGTGAAGCTACCATTGATCTTCAGTTGCAGCAGTTTCAATTCACTGACGAATTTTACATACTACCTGTAACTGGTTGTGAAATAGTACTGGGAGCAGGATGGCTTAGATCATTGGGGGATATCTTATGGAACTTTGATACTATGAGAATGAGATTCACTGTTAATGGTTCTGAGTTTCAGTTACAGGGTGAGACCATTACTGAAGCCACTGTAATAAATTGCAAGGCTATGACAAGGCTACTCAGAAAGGAAAAAGAAGCTATGCTAGTTCAGGTTCAGCCAATCTTACAGAGTCAAGAGGTTTTGGTACAGGATCCACAAATCCAAGCTTTGATCCACAAATATGAAGAGCTGTTTACTACACCATCTACTCTTCCACCAACAAGGACTCAAGATCATAGGATTGAATTACTACCAAATACTTCCCCTGTGAGTGTCAGACCCTATAGATACCCTCATTTTCAGAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

857

Amino Acids

95.82

Weight (kDa)

6.81

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 375 - 505 6.9e-09 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 388 - 476 2.5e-10 Retrotransposon gag protein
RVP_2 PF08284 652 - 737 5.8e-06 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1646, 1927
Acc65I GGTACC 1 cut(s) 860
AccB1I GGYRCC 2 cut(s) 803, 860
AccI GTMKAC 1 cut(s) 1074
AccII CGCG 1 cut(s) 112
AciI CCGC 2 cut(s) 112, 1926
AclWI GGATC 8 cut(s) 301, 1022, 1035, 1082, 1458, 2408, 2421, 2428
AcoI YGGCCR 2 cut(s) 150, 882
AcsI RAATTY 7 cut(s) 74, 191, 302, 1064, 1220, 1525, 2150
AcuI CTGAAG 4 cut(s) 68, 351, 2105, 2322
AdeI CACNNNGTG 1 cut(s) 2102
AfaI GTAC 8 cut(s) 455, 543, 649, 823, 862, 1395, 2187, 2409
AfiI CCNNNNNNNGG 8 cut(s) 111, 352, 518, 644, 857, 1024, 1474, 2171
AflII CTTAAG 3 cut(s) 560, 1421, 1532
AflIII ACRYGT 1 cut(s) 1021
AgsI TTSAA 8 cut(s) 13, 172, 632, 756, 971, 1608, 2138, 2507
AhdI GACNNNNNGTC 1 cut(s) 1898
AjnI CCWGG 1 cut(s) 1375
AjuI GAANNNNNNNTTGG 2 cut(s) 2054, 2086
AleI CACNNNNGTG 1 cut(s) 2033
Alw21I GWGCWC 1 cut(s) 2040
Alw26I GTCTC 4 cut(s) 315, 1496, 1750, 2285
Alw44I GTGCAC 1 cut(s) 2036
AlwI GGATC 8 cut(s) 301, 1022, 1035, 1082, 1458, 2408, 2421, 2428
AlwNI CAGNNNCTG 2 cut(s) 1637, 1694
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 5 cut(s) 150, 722, 882, 976, 2082
ApaLI GTGCAC 1 cut(s) 2036
ApeKI GCWGC 3 cut(s) 202, 1298, 2128
ApoI RAATTY 7 cut(s) 74, 191, 302, 1064, 1220, 1525, 2150
ArsI GACNNNNNNTTYG 2 cut(s) 1106, 1138
AseI ATTAAT 2 cut(s) 1611, 1980
Asp718I GGTACC 1 cut(s) 860
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 6 cut(s) 88, 234, 722, 976, 1634, 2082
AsuHPI GGTGA 8 cut(s) 68, 208, 388, 801, 840, 1919, 2114, 2300
AsuNHI GCTAGC 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 229
AvaII GGWCC 3 cut(s) 88, 234, 1634
BaeGI GKGCMC 2 cut(s) 2030, 2040
BalI TGGCCA 2 cut(s) 152, 884
BamHI GGATCC 2 cut(s) 1027, 2413
BanI GGYRCC 2 cut(s) 803, 860
BanII GRGCYC 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 2040
BbvI GCAGC 3 cut(s) 214, 1285, 2140
BccI CCATC 9 cut(s) 40, 99, 178, 284, 1194, 1780, 2016, 2193, 2473
BciT130I CCWGG 1 cut(s) 1377
BcoDI GTCTC 4 cut(s) 315, 1496, 1750, 2285
BfaI CTAG 7 cut(s) 165, 1365, 1487, 1491, 1707, 1820, 2366
BfmI CTRYAG 3 cut(s) 427, 1765, 2545
BfrI CTTAAG 3 cut(s) 560, 1421, 1532
BfuAI ACCTGC 2 cut(s) 1646, 1927
BglII AGATCT 1 cut(s) 380
BisI GCNGC 4 cut(s) 203, 1299, 1926, 2129
BlsI GCNGC 4 cut(s) 204, 1300, 1927, 2130
BmcAI AGTACT 1 cut(s) 2187
Bme1390I CCNGG 1 cut(s) 1377
Bme18I GGWCC 3 cut(s) 88, 234, 1634
BmeRI GACNNNNNGTC 1 cut(s) 1898
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 6 cut(s) 88, 234, 722, 976, 1634, 2082
BmiI GGNNCC 9 cut(s) 235, 236, 339, 624, 805, 862, 1029, 2083, 2415
BmrFI CCNGG 1 cut(s) 1377
BmrI ACTGGG 1 cut(s) 2198
BmsI GCATC 5 cut(s) 109, 114, 671, 751, 1361
BmtI GCTAGC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 2198
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 2021
BpuEI CTTGAG 2 cut(s) 462, 2475
Bsa29I ATCGAT 1 cut(s) 1198
BsaI GGTCTC 2 cut(s) 315, 2285
BsaJI CCNNGG 3 cut(s) 616, 1375, 1376
BsaWI WCCGGW 2 cut(s) 53, 644
BsaXI ACNNNNNCTCC 4 cut(s) 1077, 1107, 1558, 1588
Bsc4I CCNNNNNNNGG 8 cut(s) 111, 352, 518, 644, 857, 1024, 1474, 2171
Bse1I ACTGG 8 cut(s) 105, 341, 774, 1091, 1327, 1665, 2176, 2193
BseBI CCWGG 1 cut(s) 1377
BseCI ATCGAT 1 cut(s) 1198
BseDI CCNNGG 3 cut(s) 616, 1375, 1376
BseGI GGATG 7 cut(s) 32, 193, 985, 1447, 1882, 2008, 2204
BseLI CCNNNNNNNGG 8 cut(s) 111, 352, 518, 644, 857, 1024, 1474, 2171
BseMII CTCAG 5 cut(s) 375, 653, 1800, 2262, 2356
BseNI ACTGG 8 cut(s) 105, 341, 774, 1091, 1327, 1665, 2176, 2193
BseRI GAGGAG 3 cut(s) 371, 1098, 1388
BseSI GKGCMC 2 cut(s) 2030, 2040
BseXI GCAGC 3 cut(s) 214, 1285, 2140
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 5 cut(s) 152, 724, 884, 978, 2084
BshNI GGYRCC 2 cut(s) 803, 860
BshVI ATCGAT 1 cut(s) 1198
BsiHKAI GWGCWC 1 cut(s) 2040
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 2 cut(s) 54, 645
BslFI GGGAC 5 cut(s) 247, 329, 734, 1254, 1787
BslI CCNNNNNNNGG 8 cut(s) 111, 352, 518, 644, 857, 1024, 1474, 2171
BsmAI GTCTC 4 cut(s) 315, 1496, 1750, 2285
BsmFI GGGAC 5 cut(s) 247, 329, 734, 1254, 1787
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 5 cut(s) 152, 724, 884, 978, 2084
Bso31I GGTCTC 2 cut(s) 315, 2285
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 3 cut(s) 625, 2030, 2040
Bsp1407I TGTACA 1 cut(s) 453
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 2 cut(s) 112, 1926
BspANI GGCC 5 cut(s) 152, 724, 884, 978, 2084
BspCNI CTCAG 5 cut(s) 376, 652, 1801, 2263, 2355
BspDI ATCGAT 1 cut(s) 1198
BspFNI CGCG 1 cut(s) 112
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 9 cut(s) 235, 236, 339, 624, 805, 862, 1029, 2083, 2415
BspMI ACCTGC 2 cut(s) 1646, 1927
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 8 cut(s) 301, 1022, 1035, 1082, 1458, 2408, 2421, 2428
BspQI GCTCTTC 3 cut(s) 1705, 1734, 2442
BspT107I GGYRCC 2 cut(s) 803, 860
BspTI CTTAAG 3 cut(s) 560, 1421, 1532
BspTNI GGTCTC 2 cut(s) 315, 2285
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 8 cut(s) 105, 341, 774, 1091, 1327, 1665, 2176, 2193
BssECI CCNNGG 3 cut(s) 616, 1375, 1376
BssNAI GTATAC 1 cut(s) 1075
BssT1I CCWWGG 1 cut(s) 616
Bst1107I GTATAC 1 cut(s) 1075
Bst2UI CCWGG 1 cut(s) 1377
Bst6I CTCTTC 5 cut(s) 370, 1705, 1734, 2442, 2478
BstAFI CTTAAG 3 cut(s) 560, 1421, 1532
BstAPI GCANNNNNTGC 2 cut(s) 659, 668
BstAUI TGTACA 1 cut(s) 453
BstC8I GCNNGC 3 cut(s) 129, 166, 1449
BstDEI CTNAG 7 cut(s) 384, 639, 1809, 2021, 2204, 2271, 2342
BstDSI CCRYGG 1 cut(s) 616
BstENI CCTNNNNNAGG 1 cut(s) 1472
BstF5I GGATG 7 cut(s) 32, 193, 985, 1447, 1882, 2008, 2204
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 112
BstMAI GTCTC 4 cut(s) 315, 1496, 1750, 2285
BstMWI GCNNNNNNNGC 6 cut(s) 128, 659, 668, 1712, 1750, 2081
BstNI CCWGG 1 cut(s) 1377
BstNSI RCATGY 5 cut(s) 493, 553, 657, 671, 1025
BstSCI CCNGG 1 cut(s) 1375
BstSFI CTRYAG 3 cut(s) 427, 1765, 2545
BstSLI GKGCMC 2 cut(s) 2030, 2040
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 3 cut(s) 214, 1285, 2140
BstX2I RGATCY 5 cut(s) 293, 380, 1027, 1087, 2413
BstXI CCANNNNNNTGG 2 cut(s) 160, 1098
BstYI RGATCY 5 cut(s) 293, 380, 1027, 1087, 2413
BstZ17I GTATAC 1 cut(s) 1075
Bsu15I ATCGAT 1 cut(s) 1198
BsuRI GGCC 5 cut(s) 152, 724, 884, 978, 2084
BsuTUI ATCGAT 1 cut(s) 1198
BtgI CCRYGG 1 cut(s) 616
BtgZI GCGATG 1 cut(s) 137
BtsCI GGATG 7 cut(s) 32, 193, 985, 1447, 1882, 2008, 2204
BtsIMutI CAGTG 9 cut(s) 112, 375, 573, 1098, 1830, 2057, 2142, 2256, 2307
BveI ACCTGC 2 cut(s) 1646, 1927
Cac8I GCNNGC 3 cut(s) 129, 166, 1449
CaiI CAGNNNCTG 2 cut(s) 1637, 1694
CciI TCATGA 1 cut(s) 708
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 6 cut(s) 88, 234, 722, 976, 1634, 2082
ClaI ATCGAT 1 cut(s) 1198
Csp6I GTAC 8 cut(s) 454, 542, 648, 822, 861, 1394, 2186, 2408
CviQI GTAC 8 cut(s) 454, 542, 648, 822, 861, 1394, 2186, 2408
DdeI CTNAG 7 cut(s) 384, 639, 1809, 2021, 2204, 2271, 2342
DraI TTTAAA 1 cut(s) 196
DraIII CACNNNGTG 1 cut(s) 2102
DriI GACNNNNNGTC 1 cut(s) 1898
EaeI YGGCCR 2 cut(s) 150, 882
Eam1104I CTCTTC 5 cut(s) 370, 1705, 1734, 2442, 2478
Eam1105I GACNNNNNGTC 1 cut(s) 1898
EarI CTCTTC 5 cut(s) 370, 1705, 1734, 2442, 2478
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 625
Eco31I GGTCTC 2 cut(s) 315, 2285
Eco32I GATATC 2 cut(s) 589, 2221
Eco47I GGWCC 3 cut(s) 88, 234, 1634
Eco57I CTGAAG 4 cut(s) 68, 351, 2105, 2322
Eco88I CYCGRG 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 1472
EcoO109I RGGNCCY 2 cut(s) 234, 1634
EcoRI GAATTC 2 cut(s) 74, 1220
EcoRII CCWGG 1 cut(s) 1375
EcoRV GATATC 2 cut(s) 589, 2221
EcoT14I CCWWGG 1 cut(s) 616
EcoT22I ATGCAT 2 cut(s) 495, 744
EcoT38I GRGCYC 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 616
FaqI GGGAC 5 cut(s) 247, 329, 734, 1254, 1787
FauNDI CATATG 2 cut(s) 495, 903
FblI GTMKAC 1 cut(s) 1074
Fnu4HI GCNGC 4 cut(s) 203, 1299, 1926, 2129
FokI GGATG 7 cut(s) 19, 200, 972, 1454, 1889, 1995, 2211
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 4 cut(s) 203, 1299, 1926, 2129
FspBI CTAG 7 cut(s) 165, 1365, 1487, 1491, 1707, 1820, 2366
GlaI GCGC 1 cut(s) 111
GluI GCNGC 4 cut(s) 203, 1299, 1926, 2129
HaeIII GGCC 5 cut(s) 152, 724, 884, 978, 2084
HapII CCGG 2 cut(s) 54, 645
HhaI GCGC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HindIII AAGCTT 2 cut(s) 1188, 2427
HinfI GANTC 8 cut(s) 143, 359, 1000, 1315, 1573, 2253, 2392, 2488
HpaII CCGG 2 cut(s) 54, 645
HphI GGTGA 8 cut(s) 68, 208, 388, 801, 840, 1919, 2114, 2300
Hpy188III TCNNGA 7 cut(s) 95, 346, 709, 1255, 1650, 2396, 2492
HpyAV CCTTC 4 cut(s) 7, 520, 762, 1508
HpyCH4IV ACGT 3 cut(s) 48, 933, 2040
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 659, 668, 1712, 1750, 2081
HpyF3I CTNAG 7 cut(s) 384, 639, 1809, 2021, 2204, 2271, 2342
HpySE526I ACGT 3 cut(s) 48, 933, 2040
HspAI GCGC 1 cut(s) 110
KflI GGGWCCC 1 cut(s) 234
KpnI GGTACC 1 cut(s) 864
LguI GCTCTTC 3 cut(s) 1705, 1734, 2442
LmnI GCTCC 3 cut(s) 514, 628, 2192
Lsp1109I GCAGC 3 cut(s) 214, 1285, 2140
LweI GCATC 5 cut(s) 109, 114, 671, 751, 1361
MaeI CTAG 7 cut(s) 165, 1365, 1487, 1491, 1707, 1820, 2366
MaeII ACGT 3 cut(s) 48, 933, 2040
MaeIII GTNAC 7 cut(s) 412, 789, 1274, 1541, 1570, 2167, 2280
MfeI CAATTG 2 cut(s) 504, 1161
MflI RGATCY 5 cut(s) 293, 380, 1027, 1087, 2413
MhlI GDGCHC 3 cut(s) 625, 2030, 2040
MlsI TGGCCA 2 cut(s) 152, 884
MluNI TGGCCA 2 cut(s) 152, 884
MlyI GAGTC 4 cut(s) 368, 1567, 2401, 2482
MmeI TCCRAC 2 cut(s) 1036, 1041
Mox20I TGGCCA 2 cut(s) 152, 884
Mph1103I ATGCAT 2 cut(s) 495, 744
MscI TGGCCA 2 cut(s) 152, 884
MslI CAYNNNNRTG 7 cut(s) 96, 494, 498, 902, 1436, 2033, 2442
Msp20I TGGCCA 2 cut(s) 152, 884
MspCI CTTAAG 3 cut(s) 560, 1421, 1532
MspI CCGG 2 cut(s) 54, 645
MspR9I CCNGG 1 cut(s) 1377
MunI CAATTG 2 cut(s) 504, 1161
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 1377
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 6 cut(s) 128, 659, 668, 1712, 1750, 2081
NcoI CCATGG 1 cut(s) 616
NdeI CATATG 2 cut(s) 495, 903
NheI GCTAGC 1 cut(s) 164
NlaIV GGNNCC 9 cut(s) 235, 236, 339, 624, 805, 862, 1029, 2083, 2415
NmeAIII GCCGAG 1 cut(s) 1779
NmuCI GTSAC 3 cut(s) 789, 1541, 1570
NsiI ATGCAT 2 cut(s) 495, 744
NspI RCATGY 5 cut(s) 493, 553, 657, 671, 1025
OliI CACNNNNGTG 1 cut(s) 2033
PagI TCATGA 1 cut(s) 708
PasI CCCWGGG 1 cut(s) 1376
PciI ACATGT 1 cut(s) 1021
PciSI GCTCTTC 3 cut(s) 1705, 1734, 2442
PctI GAATGC 1 cut(s) 505
PfeI GAWTC 4 cut(s) 143, 1000, 1315, 2253
PkrI GCNGC 4 cut(s) 204, 1300, 1927, 2130
PleI GAGTC 4 cut(s) 367, 1567, 2400, 2482
PpsI GAGTC 4 cut(s) 367, 1567, 2400, 2482
PpuMI RGGWCCY 2 cut(s) 234, 1634
PscI ACATGT 1 cut(s) 1021
PshBI ATTAAT 2 cut(s) 1611, 1980
Psp5II RGGWCCY 2 cut(s) 234, 1634
Psp6I CCWGG 1 cut(s) 1375
PspGI CCWGG 1 cut(s) 1375
PspN4I GGNNCC 9 cut(s) 235, 236, 339, 624, 805, 862, 1029, 2083, 2415
PspPI GGNCC 6 cut(s) 88, 234, 722, 976, 1634, 2082
PspPPI RGGWCCY 2 cut(s) 234, 1634
PstNI CAGNNNCTG 2 cut(s) 1637, 1694
PsuI RGATCY 5 cut(s) 293, 380, 1027, 1087, 2413
RsaI GTAC 8 cut(s) 455, 543, 649, 823, 862, 1395, 2187, 2409
RsaNI GTAC 8 cut(s) 454, 542, 648, 822, 861, 1394, 2186, 2408
RseI CAYNNNNRTG 7 cut(s) 96, 494, 498, 902, 1436, 2033, 2442
SapI GCTCTTC 3 cut(s) 1705, 1734, 2442
SatI GCNGC 4 cut(s) 203, 1299, 1926, 2129
Sau96I GGNCC 6 cut(s) 88, 234, 722, 976, 1634, 2082
ScaI AGTACT 1 cut(s) 2187
SchI GAGTC 4 cut(s) 368, 1567, 2401, 2482
ScrFI CCNGG 1 cut(s) 1377
SduI GDGCHC 3 cut(s) 625, 2030, 2040
SfaNI GCATC 5 cut(s) 109, 114, 671, 751, 1361
SfcI CTRYAG 3 cut(s) 427, 1765, 2545
SinI GGWCC 3 cut(s) 88, 234, 1634
SmiMI CAYNNNNRTG 7 cut(s) 96, 494, 498, 902, 1436, 2033, 2442
SmlI CTYRAG 5 cut(s) 477, 560, 1421, 1532, 2490
SmoI CTYRAG 5 cut(s) 477, 560, 1421, 1532, 2490
SsiI CCGC 2 cut(s) 112, 1926
SspI AATATT 2 cut(s) 577, 1121
SspMI CTAG 7 cut(s) 165, 1365, 1487, 1491, 1707, 1820, 2366
StyD4I CCNGG 1 cut(s) 1375
StyI CCWWGG 1 cut(s) 616
TaiI ACGT 3 cut(s) 51, 936, 2043
TaqI TCGA 2 cut(s) 78, 1198
TatI WGTACW 2 cut(s) 453, 2185
TauI GCSGC 1 cut(s) 1928
TfiI GAWTC 4 cut(s) 143, 1000, 1315, 2253
TscAI CASTG 9 cut(s) 112, 375, 573, 1098, 1837, 2064, 2149, 2263, 2314
TseFI GTSAC 3 cut(s) 789, 1541, 1570
TseI GCWGC 3 cut(s) 202, 1298, 2128
Tsp45I GTSAC 3 cut(s) 789, 1541, 1570
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 9 cut(s) 112, 375, 573, 1098, 1837, 2064, 2149, 2263, 2314
Vha464I CTTAAG 3 cut(s) 560, 1421, 1532
VneI GTGCAC 1 cut(s) 2036
VpaK11BI GGWCC 3 cut(s) 88, 234, 1634
VspI ATTAAT 2 cut(s) 1611, 1980
XagI CCTNNNNNAGG 1 cut(s) 1472
XapI RAATTY 7 cut(s) 74, 191, 302, 1064, 1220, 1525, 2150
XceI RCATGY 5 cut(s) 493, 553, 657, 671, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 1074
XspI CTAG 7 cut(s) 165, 1365, 1487, 1491, 1707, 1820, 2366
ZrmI AGTACT 1 cut(s) 2187
Zsp2I ATGCAT 2 cut(s) 495, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.