Rw2G044860

Chromo (CHRromatin Organisation MOdifier) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000756
Physical Location & Seq
Forward (+)
71624701 .. 71625318
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G044860.1

Sequence Viewer

Length: 618 bp
ATGAGCCCCTTTGAAGCCTTATATGGTAGACCACCTCCTCTTATTCATGCTTATATACCTGGTAGCACATCAGTACATCAGGTTGACTTGCAATTGAAGGATAGAGATGAACTTTTATCTGTTTTGAAGAAGAATATGCAAGCAGCGCAGACCAGAATGAAGAACTATTATGATAAGCACCATACGGAGAGATCATTTGAGGTGGGAGACTATGTTTTTTTGAAATTACAGCCCTATAGGCAACAATCCGTGCAACAAAGGAAGTCTCAGAAGTTGGCACCCAAATACTTTGGACCCTTTCTGTTGATCAGTAAAGTGGGAAAAGTTGCATACAAGCTTCAACTACCTTCAACTGCGAGAATCCATCCTGTGTTCCATGTGTCTAGACTTAAGAAGAAAGTTGGCTCAGCTGAACCTACATCTCCTAATTTACCACCAATATTTGAGAGTGATAAAGCCAAGTGGTACCCAGAAAAGATCATTGACAGGGGCATATTCAAGAAGAACAAGACAGCAGTGACAAAGTGGCTAATCCAATGGAAGAACACTGGTGAGGAGAATTCTACTTGGGAGGATCCAGATCAATTCATGCAGCAATTTCCTGAATTCCAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo

Protein Analysis

205

Amino Acids

23.92

Weight (kDa)

9.72

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 69 - 133 7.8e-23 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 2 cut(s) 277, 465
AccI GTMKAC 1 cut(s) 28
AclWI GGATC 2 cut(s) 569, 582
AcsI RAATTY 2 cut(s) 559, 605
AfaI GTAC 2 cut(s) 75, 467
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 7 cut(s) 14, 97, 127, 223, 341, 351, 499
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 2 cut(s) 337, 410
AluI AGCT 2 cut(s) 337, 410
Alw26I GTCTC 2 cut(s) 201, 270
AlwI GGATC 2 cut(s) 569, 582
ApeKI GCWGC 2 cut(s) 143, 592
ApoI RAATTY 2 cut(s) 559, 605
Asp718I GGTACC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 563
AvaII GGWCC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 574
BanI GGYRCC 2 cut(s) 277, 465
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 155, 604
BccI CCATC 1 cut(s) 372
BciT130I CCWGG 1 cut(s) 60
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 201, 270
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 235
BfrI CTTAAG 1 cut(s) 389
BglI GCCNNNNNGGC 1 cut(s) 238
BisI GCNGC 2 cut(s) 144, 593
BlpI GCTNAGC 1 cut(s) 406
BlsI GCNGC 2 cut(s) 145, 594
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 4 cut(s) 279, 295, 467, 576
BmrFI CCNGG 1 cut(s) 60
Bpu1102I GCTNAGC 1 cut(s) 406
BsaBI GATNNNNATC 1 cut(s) 579
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bse1I ACTGG 1 cut(s) 553
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 364
BseJI GATNNNNATC 1 cut(s) 579
BseMII CTCAG 2 cut(s) 281, 420
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 2 cut(s) 27, 569
BseXI GCAGC 2 cut(s) 155, 604
BshNI GGYRCC 2 cut(s) 277, 465
BsmAI GTCTC 2 cut(s) 201, 270
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 191, 306, 477, 574, 580
Bsp1720I GCTNAGC 1 cut(s) 406
BspCNI CTCAG 2 cut(s) 280, 419
BspLI GGNNCC 4 cut(s) 279, 295, 467, 576
BspPI GGATC 2 cut(s) 569, 582
BspT107I GGYRCC 2 cut(s) 277, 465
BspTI CTTAAG 1 cut(s) 389
BsrI ACTGG 1 cut(s) 553
BssMI GATC 5 cut(s) 191, 306, 477, 574, 580
Bst2UI CCWGG 1 cut(s) 60
BstAFI CTTAAG 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 267, 406
BstF5I GGATG 1 cut(s) 364
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 5 cut(s) 194, 309, 480, 577, 583
BstMAI GTCTC 2 cut(s) 201, 270
BstMBI GATC 5 cut(s) 191, 306, 477, 574, 580
BstMWI GCNNNNNNNGC 2 cut(s) 145, 238
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 155, 604
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 2 cut(s) 522, 546
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 293
CsiI ACCWGGT 1 cut(s) 58
Csp6I GTAC 2 cut(s) 74, 466
CviAII CATG 3 cut(s) 47, 377, 589
CviJI RGCY 8 cut(s) 6, 17, 232, 337, 405, 410, 458, 529
CviKI_1 RGCY 8 cut(s) 6, 17, 232, 337, 405, 410, 458, 529
CviQI GTAC 2 cut(s) 74, 466
DdeI CTNAG 2 cut(s) 267, 406
DpnI GATC 5 cut(s) 193, 308, 479, 576, 582
DpnII GATC 5 cut(s) 191, 306, 477, 574, 580
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 293
EcoRI GAATTC 2 cut(s) 559, 605
EcoRII CCWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 3 cut(s) 50, 380, 592
FatI CATG 3 cut(s) 46, 376, 588
FbaI TGATCA 1 cut(s) 306
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 144, 593
FokI GGATG 1 cut(s) 351
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 144, 593
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 147
GluI GCNGC 2 cut(s) 144, 593
HhaI GCGC 1 cut(s) 148
Hin1II CATG 3 cut(s) 50, 380, 592
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 1 cut(s) 360
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 2 cut(s) 29, 85
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 4 cut(s) 384, 499, 578, 602
Hpy8I GTNNAC 2 cut(s) 29, 85
HpyAV CCTTC 2 cut(s) 91, 357
HpyCH4V TGCA 5 cut(s) 91, 139, 253, 329, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 238
HpyF3I CTNAG 2 cut(s) 267, 406
Hsp92II CATG 3 cut(s) 50, 380, 592
HspAI GCGC 1 cut(s) 146
KpnI GGTACC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 5 cut(s) 191, 306, 477, 574, 580
LpnPI CCDG 9 cut(s) 45, 65, 72, 166, 381, 472, 483, 534, 591
Lsp1109I GCAGC 2 cut(s) 155, 604
MabI ACCWGGT 1 cut(s) 58
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 517
MalI GATC 5 cut(s) 193, 308, 479, 576, 582
MboI GATC 5 cut(s) 191, 306, 477, 574, 580
MboII GAAGA 6 cut(s) 139, 142, 172, 406, 514, 553
MfeI CAATTG 1 cut(s) 92
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 7 cut(s) 92, 224, 427, 559, 584, 596, 605
MnlI CCTC 5 cut(s) 45, 48, 193, 547, 565
MseI TTAA 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 410
MspCI CTTAAG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 145, 238
NdeII GATC 5 cut(s) 191, 306, 477, 574, 580
NlaIII CATG 3 cut(s) 50, 380, 592
NlaIV GGNNCC 4 cut(s) 279, 295, 467, 576
NmuCI GTSAC 1 cut(s) 517
PfeI GAWTC 1 cut(s) 360
PkrI GCNGC 2 cut(s) 145, 594
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 4 cut(s) 279, 295, 467, 576
PspPI GGNCC 1 cut(s) 293
PsuI RGATCY 1 cut(s) 574
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 2 cut(s) 75, 467
RsaNI GTAC 2 cut(s) 74, 466
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 144, 593
Sau3AI GATC 5 cut(s) 191, 306, 477, 574, 580
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 37, 61, 84, 204, 339, 349, 412, 418, 617
SexAI ACCWGGT 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 7 cut(s) 92, 224, 427, 559, 584, 596, 605
SspI AATATT 1 cut(s) 441
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 58
TasI AATT 7 cut(s) 92, 224, 427, 559, 584, 596, 605
TatI WGTACW 1 cut(s) 73
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 2 cut(s) 522, 553
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 2 cut(s) 143, 592
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 4 cut(s) 35, 123, 173, 577
TspGWI ACGGA 2 cut(s) 200, 238
TspRI CASTG 2 cut(s) 522, 553
Vha464I CTTAAG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 2 cut(s) 559, 605
XbaI TCTAGA 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.