transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ty3_capsid | PF19259 | 187 - 317 | 2.6e-09 | Ty3 transposon capsid-like protein |
| Retrotrans_gag | PF03732 | 204 - 291 | 1.8e-10 | Retrotransposon gag protein |
| RVT_1 | PF00078 | 593 - 693 | 2.8e-23 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 779 - 873 | 2.2e-31 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 804 - 903 | 4.1e-31 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 993 - 1045 | 1.4e-17 | Integrase zinc binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1050 |
| Acc36I | ACCTGC | 1 cut(s) | 2243 |
| Acc65I | GGTACC | 1 cut(s) | 1932 |
| AccB1I | GGYRCC | 1 cut(s) | 1932 |
| AccI | GTMKAC | 1 cut(s) | 3079 |
| AciI | CCGC | 2 cut(s) | 641, 887 |
| AclWI | GGATC | 6 cut(s) | 530, 781, 2168, 2181, 2846, 2885 |
| AcoI | YGGCCR | 3 cut(s) | 2204, 2482, 3071 |
| AcsI | RAATTY | 6 cut(s) | 512, 1603, 1625, 2423, 2616, 2908 |
| AcuI | CTGAAG | 3 cut(s) | 2430, 2877, 3255 |
| AfaI | GTAC | 9 cut(s) | 653, 920, 1080, 1221, 1380, 1653, 1890, 1934, 2389 |
| AflII | CTTAAG | 2 cut(s) | 1361, 1921 |
| AflIII | ACRYGT | 4 cut(s) | 445, 654, 1648, 2143 |
| AgeI | ACCGGT | 1 cut(s) | 2806 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1745, 1924 |
| AhlI | ACTAGT | 1 cut(s) | 1381 |
| AjnI | CCWGG | 6 cut(s) | 93, 181, 1153, 1176, 2136, 3154 |
| Alw21I | GWGCWC | 4 cut(s) | 999, 1377, 1536, 1614 |
| Alw26I | GTCTC | 5 cut(s) | 768, 1468, 1658, 1953, 2581 |
| Alw44I | GTGCAC | 2 cut(s) | 995, 1373 |
| AlwI | GGATC | 6 cut(s) | 530, 781, 2168, 2181, 2846, 2885 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2753, 2855 |
| Ama87I | CYCGRG | 1 cut(s) | 60 |
| AoxI | GGCC | 8 cut(s) | 819, 1011, 1151, 1174, 2118, 2204, 2482, 3071 |
| ApaI | GGGCCC | 2 cut(s) | 823, 2122 |
| ApaLI | GTGCAC | 2 cut(s) | 995, 1373 |
| ApoI | RAATTY | 6 cut(s) | 512, 1603, 1625, 2423, 2616, 2908 |
| AsiGI | ACCGGT | 1 cut(s) | 2806 |
| Asp718I | GGTACC | 1 cut(s) | 1932 |
| AspA2I | CCTAGG | 1 cut(s) | 908 |
| AsuC2I | CCSGG | 3 cut(s) | 590, 825, 3075 |
| AsuHPI | GGTGA | 4 cut(s) | 77, 1259, 1567, 1900 |
| AsuNHI | GCTAGC | 2 cut(s) | 934, 2875 |
| AvaI | CYCGRG | 1 cut(s) | 60 |
| AvaII | GGWCC | 8 cut(s) | 167, 179, 200, 230, 793, 1043, 1321, 2634 |
| AvrII | CCTAGG | 1 cut(s) | 908 |
| BaeGI | GKGCMC | 4 cut(s) | 823, 999, 1377, 2122 |
| BalI | TGGCCA | 2 cut(s) | 2206, 2484 |
| BamHI | GGATCC | 1 cut(s) | 2173 |
| BanI | GGYRCC | 1 cut(s) | 1932 |
| BanII | GRGCYC | 3 cut(s) | 823, 1614, 2122 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1203, 1235 |
| BbsI | GAAGAC | 1 cut(s) | 1281 |
| Bbv12I | GWGCWC | 4 cut(s) | 999, 1377, 1536, 1614 |
| BciT130I | CCWGG | 6 cut(s) | 95, 183, 1155, 1178, 2138, 3156 |
| BciVI | GTATCC | 1 cut(s) | 868 |
| BclI | TGATCA | 2 cut(s) | 1188, 2148 |
| BcnI | CCSGG | 3 cut(s) | 590, 825, 3075 |
| BcoDI | GTCTC | 5 cut(s) | 768, 1468, 1658, 1953, 2581 |
| BcuI | ACTAGT | 1 cut(s) | 1381 |
| BfmI | CTRYAG | 5 cut(s) | 1074, 1507, 1863, 2349, 3311 |
| BfrI | CTTAAG | 2 cut(s) | 1361, 1921 |
| BfuAI | ACCTGC | 1 cut(s) | 2243 |
| BfuI | GTATCC | 1 cut(s) | 868 |
| BlnI | CCTAGG | 1 cut(s) | 908 |
| BlpI | GCTNAGC | 1 cut(s) | 2676 |
| Bme1390I | CCNGG | 9 cut(s) | 95, 183, 590, 825, 1155, 1178, 2138, 3075, 3156 |
| Bme18I | GGWCC | 8 cut(s) | 167, 179, 200, 230, 793, 1043, 1321, 2634 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1745, 1924 |
| BmeT110I | CYCGRG | 1 cut(s) | 60 |
| BmrFI | CCNGG | 9 cut(s) | 95, 183, 590, 825, 1155, 1178, 2138, 3075, 3156 |
| BmsI | GCATC | 9 cut(s) | 463, 1406, 1688, 2004, 2202, 2431, 2614, 2746, 3208 |
| BmtI | GCTAGC | 2 cut(s) | 938, 2879 |
| BpiI | GAAGAC | 1 cut(s) | 1281 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 70, 102, 2494, 2526 |
| BpmI | CTGGAG | 3 cut(s) | 204, 1086, 2391 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2676 |
| BpuEI | CTTGAG | 3 cut(s) | 97, 324, 750 |
| BpuMI | CCSGG | 3 cut(s) | 590, 825, 3075 |
| BsaAI | YACGTR | 1 cut(s) | 1378 |
| BsaBI | GATNNNNATC | 2 cut(s) | 579, 2484 |
| BsaI | GGTCTC | 2 cut(s) | 1658, 2581 |
| BsaJI | CCNNGG | 9 cut(s) | 93, 750, 823, 908, 939, 2137, 2242, 3154, 3207 |
| BsaWI | WCCGGW | 2 cut(s) | 466, 2806 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 382, 412, 525, 555, 1792, 1822 |
| Bse118I | RCCGGY | 1 cut(s) | 2806 |
| Bse1I | ACTGG | 6 cut(s) | 136, 329, 539, 796, 1045, 1046 |
| Bse3DI | GCAATG | 1 cut(s) | 2490 |
| Bse8I | GATNNNNATC | 2 cut(s) | 579, 2484 |
| BseBI | CCWGG | 6 cut(s) | 95, 183, 1155, 1178, 2138, 3156 |
| BseDI | CCNNGG | 9 cut(s) | 93, 750, 823, 908, 939, 2137, 2242, 3154, 3207 |
| BseJI | GATNNNNATC | 2 cut(s) | 579, 2484 |
| BseMI | GCAATG | 1 cut(s) | 2490 |
| BseMII | CTCAG | 7 cut(s) | 240, 287, 657, 1022, 2690, 2817, 2985 |
| BseNI | ACTGG | 6 cut(s) | 136, 329, 539, 796, 1045, 1046 |
| BseRI | GAGGAG | 2 cut(s) | 1089, 2992 |
| BseSI | GKGCMC | 4 cut(s) | 823, 999, 1377, 2122 |
| BseYI | CCCAGC | 4 cut(s) | 71, 355, 1315, 3013 |
| BsgI | GTGCAG | 4 cut(s) | 307, 470, 2128, 2175 |
| BshFI | GGCC | 8 cut(s) | 821, 1013, 1153, 1176, 2120, 2206, 2484, 3073 |
| BshNI | GGYRCC | 1 cut(s) | 1932 |
| BshTI | ACCGGT | 1 cut(s) | 2806 |
| BsiHKAI | GWGCWC | 4 cut(s) | 999, 1377, 1536, 1614 |
| BsiHKCI | CYCGRG | 1 cut(s) | 60 |
| BsiSI | CCGG | 5 cut(s) | 467, 590, 825, 2807, 3074 |
| BslFI | GGGAC | 5 cut(s) | 213, 702, 1334, 1469, 2154 |
| BsmAI | GTCTC | 5 cut(s) | 768, 1468, 1658, 1953, 2581 |
| BsmFI | GGGAC | 5 cut(s) | 213, 702, 1334, 1469, 2154 |
| BsmI | GAATGC | 1 cut(s) | 1834 |
| BsnI | GGCC | 8 cut(s) | 821, 1013, 1153, 1176, 2120, 2206, 2484, 3073 |
| Bso31I | GGTCTC | 2 cut(s) | 1658, 2581 |
| BsoBI | CYCGRG | 1 cut(s) | 60 |
| Bsp120I | GGGCCC | 2 cut(s) | 819, 2118 |
| Bsp1286I | GDGCHC | 6 cut(s) | 823, 999, 1377, 1536, 1614, 2122 |
| Bsp1407I | TGTACA | 1 cut(s) | 1219 |
| Bsp143I | GATC | 9 cut(s) | 535, 773, 1188, 2148, 2173, 2626, 2661, 2851, 2890 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2676 |
| Bsp19I | CCATGG | 1 cut(s) | 3207 |
| BspACI | CCGC | 2 cut(s) | 641, 887 |
| BspANI | GGCC | 8 cut(s) | 821, 1013, 1153, 1176, 2120, 2206, 2484, 3073 |
| BspCNI | CTCAG | 7 cut(s) | 239, 286, 658, 1021, 2689, 2818, 2986 |
| BspHI | TCATGA | 4 cut(s) | 705, 1614, 2058, 2812 |
| BspMAI | CTGCAG | 2 cut(s) | 1078, 3315 |
| BspMI | ACCTGC | 1 cut(s) | 2243 |
| BspOI | GCTAGC | 2 cut(s) | 938, 2879 |
| BspPI | GGATC | 6 cut(s) | 530, 781, 2168, 2181, 2846, 2885 |
| BspQI | GCTCTTC | 1 cut(s) | 1105 |
| BspT107I | GGYRCC | 1 cut(s) | 1932 |
| BspTI | CTTAAG | 2 cut(s) | 1361, 1921 |
| BspTNI | GGTCTC | 2 cut(s) | 1658, 2581 |
| BsrDI | GCAATG | 1 cut(s) | 2490 |
| BsrFI | RCCGGY | 1 cut(s) | 2806 |
| BsrGI | TGTACA | 1 cut(s) | 1219 |
| BsrI | ACTGG | 6 cut(s) | 136, 329, 539, 796, 1045, 1046 |
| BssAI | RCCGGY | 1 cut(s) | 2806 |
| BssECI | CCNNGG | 9 cut(s) | 93, 750, 823, 908, 939, 2137, 2242, 3154, 3207 |
| BssMI | GATC | 9 cut(s) | 535, 773, 1188, 2148, 2173, 2626, 2661, 2851, 2890 |
| BssNAI | GTATAC | 1 cut(s) | 3080 |
| BssT1I | CCWWGG | 5 cut(s) | 750, 908, 939, 2242, 3207 |
| Bst1107I | GTATAC | 1 cut(s) | 3080 |
| Bst2UI | CCWGG | 6 cut(s) | 95, 183, 1155, 1178, 2138, 3156 |
| Bst4CI | ACNGT | 5 cut(s) | 47, 1511, 1634, 1840, 2790 |
| Bst6I | CTCTTC | 3 cut(s) | 1105, 1686, 1765 |
| BstAFI | CTTAAG | 2 cut(s) | 1361, 1921 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1300 |
| BstAUI | TGTACA | 1 cut(s) | 1219 |
| BstBAI | YACGTR | 1 cut(s) | 1378 |
| BstC8I | GCNNGC | 3 cut(s) | 936, 2376, 2877 |
| BstDSI | CCRYGG | 1 cut(s) | 3207 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 754, 1023, 1542 |
| BstKTI | GATC | 9 cut(s) | 538, 776, 1191, 2151, 2176, 2629, 2664, 2854, 2893 |
| BstMAI | GTCTC | 5 cut(s) | 768, 1468, 1658, 1953, 2581 |
| BstMBI | GATC | 9 cut(s) | 535, 773, 1188, 2148, 2173, 2626, 2661, 2851, 2890 |
| BstNI | CCWGG | 6 cut(s) | 95, 183, 1155, 1178, 2138, 3156 |
| BstNSI | RCATGY | 4 cut(s) | 449, 658, 1652, 2147 |
| BstSCI | CCNGG | 9 cut(s) | 93, 181, 588, 823, 1153, 1176, 2136, 3073, 3154 |
| BstSFI | CTRYAG | 5 cut(s) | 1074, 1507, 1863, 2349, 3311 |
| BstSLI | GKGCMC | 4 cut(s) | 823, 999, 1377, 2122 |
| BstV2I | GAAGAC | 1 cut(s) | 1281 |
| BstX2I | RGATCY | 5 cut(s) | 535, 773, 2173, 2851, 2890 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 546, 681 |
| BstYI | RGATCY | 5 cut(s) | 535, 773, 2173, 2851, 2890 |
| BstZ17I | GTATAC | 1 cut(s) | 3080 |
| BsuI | GTATCC | 1 cut(s) | 868 |
| BsuRI | GGCC | 8 cut(s) | 821, 1013, 1153, 1176, 2120, 2206, 2484, 3073 |
| BtgI | CCRYGG | 1 cut(s) | 3207 |
| BtsI | GCAGTG | 2 cut(s) | 2175, 2879 |
| BtsIMutI | CAGTG | 5 cut(s) | 52, 1639, 2158, 2175, 2879 |
| BveI | ACCTGC | 1 cut(s) | 2243 |
| Cac8I | GCNNGC | 3 cut(s) | 936, 2376, 2877 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2753, 2855 |
| CciI | TCATGA | 4 cut(s) | 705, 1614, 2058, 2812 |
| Cfr10I | RCCGGY | 1 cut(s) | 2806 |
| Csp6I | GTAC | 9 cut(s) | 652, 919, 1079, 1220, 1379, 1652, 1889, 1933, 2388 |
| CspAI | ACCGGT | 1 cut(s) | 2806 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2167, 2202 |
| CviQI | GTAC | 9 cut(s) | 652, 919, 1079, 1220, 1379, 1652, 1889, 1933, 2388 |
| DpnI | GATC | 9 cut(s) | 537, 775, 1190, 2150, 2175, 2628, 2663, 2853, 2892 |
| DpnII | GATC | 9 cut(s) | 535, 773, 1188, 2148, 2173, 2626, 2661, 2851, 2890 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1050 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1745, 1924 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1050 |
| EaeI | YGGCCR | 3 cut(s) | 2204, 2482, 3071 |
| Eam1104I | CTCTTC | 3 cut(s) | 1105, 1686, 1765 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1745, 1924 |
| EarI | CTCTTC | 3 cut(s) | 1105, 1686, 1765 |
| EciI | GGCGGA | 1 cut(s) | 902 |
| Ecl136II | GAGCTC | 1 cut(s) | 1612 |
| Eco130I | CCWWGG | 5 cut(s) | 750, 908, 939, 2242, 3207 |
| Eco147I | AGGCCT | 1 cut(s) | 1153 |
| Eco24I | GRGCYC | 3 cut(s) | 823, 1614, 2122 |
| Eco31I | GGTCTC | 2 cut(s) | 1658, 2581 |
| Eco32I | GATATC | 1 cut(s) | 3091 |
| Eco47I | GGWCC | 8 cut(s) | 167, 179, 200, 230, 793, 1043, 1321, 2634 |
| Eco53kI | GAGCTC | 1 cut(s) | 1612 |
| Eco57I | CTGAAG | 3 cut(s) | 2430, 2877, 3255 |
| Eco88I | CYCGRG | 1 cut(s) | 60 |
| EcoICRI | GAGCTC | 1 cut(s) | 1612 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 754, 1023, 1542 |
| EcoO109I | RGGNCCY | 7 cut(s) | 167, 230, 819, 820, 1321, 2118, 2119 |
| EcoRII | CCWGG | 6 cut(s) | 93, 181, 1153, 1176, 2136, 3154 |
| EcoRV | GATATC | 1 cut(s) | 3091 |
| EcoT14I | CCWWGG | 5 cut(s) | 750, 908, 939, 2242, 3207 |
| EcoT38I | GRGCYC | 3 cut(s) | 823, 1614, 2122 |
| ErhI | CCWWGG | 5 cut(s) | 750, 908, 939, 2242, 3207 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1904, 1936 |
| FaqI | GGGAC | 5 cut(s) | 213, 702, 1334, 1469, 2154 |
| FbaI | TGATCA | 2 cut(s) | 1188, 2148 |
| FblI | GTMKAC | 1 cut(s) | 3079 |
| FriOI | GRGCYC | 3 cut(s) | 823, 1614, 2122 |
| GsaI | CCCAGC | 4 cut(s) | 75, 359, 1319, 3017 |
| GsuI | CTGGAG | 3 cut(s) | 204, 1086, 2391 |
| HaeIII | GGCC | 8 cut(s) | 821, 1013, 1153, 1176, 2120, 2206, 2484, 3073 |
| HapII | CCGG | 5 cut(s) | 467, 590, 825, 2807, 3074 |
| HincII | GTYRAC | 2 cut(s) | 253, 1259 |
| HindII | GTYRAC | 2 cut(s) | 253, 1259 |
| HindIII | AAGCTT | 1 cut(s) | 1002 |
| HinfI | GANTC | 6 cut(s) | 112, 964, 1388, 1731, 1984, 2653 |
| HpaI | GTTAAC | 1 cut(s) | 253 |
| HpaII | CCGG | 5 cut(s) | 467, 590, 825, 2807, 3074 |
| HphI | GGTGA | 4 cut(s) | 77, 1259, 1567, 1900 |
| Hpy166II | GTNNAC | 9 cut(s) | 68, 253, 334, 801, 997, 1259, 1375, 2390, 3080 |
| Hpy188I | TCNGA | 9 cut(s) | 111, 179, 195, 276, 631, 697, 2028, 2449, 3235 |
| Hpy8I | GTNNAC | 9 cut(s) | 68, 253, 334, 801, 997, 1259, 1375, 2390, 3080 |
| HpyCH4III | ACNGT | 5 cut(s) | 47, 1511, 1634, 1840, 2790 |
| HpyCH4IV | ACGT | 3 cut(s) | 54, 374, 1377 |
| HpySE526I | ACGT | 3 cut(s) | 54, 374, 1377 |
| KflI | GGGWCCC | 1 cut(s) | 1321 |
| KpnI | GGTACC | 1 cut(s) | 1936 |
| Ksp22I | TGATCA | 2 cut(s) | 1188, 2148 |
| KspAI | GTTAAC | 1 cut(s) | 253 |
| Kzo9I | GATC | 9 cut(s) | 535, 773, 1188, 2148, 2173, 2626, 2661, 2851, 2890 |
| LguI | GCTCTTC | 1 cut(s) | 1105 |
| LmnI | GCTCC | 7 cut(s) | 97, 1539, 1565, 1895, 2771, 2979, 3195 |
| LweI | GCATC | 9 cut(s) | 463, 1406, 1688, 2004, 2202, 2431, 2614, 2746, 3208 |
| MaeII | ACGT | 3 cut(s) | 54, 374, 1377 |
| MaeIII | GTNAC | 5 cut(s) | 28, 55, 1157, 1480, 2472 |
| MalI | GATC | 9 cut(s) | 537, 775, 1190, 2150, 2175, 2628, 2663, 2853, 2892 |
| MboI | GATC | 9 cut(s) | 535, 773, 1188, 2148, 2173, 2626, 2661, 2851, 2890 |
| MboII | GAAGA | 7 cut(s) | 1122, 1220, 1286, 1378, 1703, 1752, 2749 |
| MfeI | CAATTG | 1 cut(s) | 1162 |
| MflI | RGATCY | 5 cut(s) | 535, 773, 2173, 2851, 2890 |
| MhlI | GDGCHC | 6 cut(s) | 823, 999, 1377, 1536, 1614, 2122 |
| MlsI | TGGCCA | 2 cut(s) | 2206, 2484 |
| MluNI | TGGCCA | 2 cut(s) | 2206, 2484 |
| MlyI | GAGTC | 2 cut(s) | 106, 1978 |
| MmeI | TCCRAC | 3 cut(s) | 1860, 1896, 2221 |
| Mox20I | TGGCCA | 2 cut(s) | 2206, 2484 |
| MscI | TGGCCA | 2 cut(s) | 2206, 2484 |
| MslI | CAYNNNNRTG | 4 cut(s) | 683, 1619, 2817, 3206 |
| Msp20I | TGGCCA | 2 cut(s) | 2206, 2484 |
| MspCI | CTTAAG | 2 cut(s) | 1361, 1921 |
| MspI | CCGG | 5 cut(s) | 467, 590, 825, 2807, 3074 |
| MspR9I | CCNGG | 9 cut(s) | 95, 183, 590, 825, 1155, 1178, 2138, 3075, 3156 |
| MunI | CAATTG | 1 cut(s) | 1162 |
| Mva1269I | GAATGC | 1 cut(s) | 1834 |
| MvaI | CCWGG | 6 cut(s) | 95, 183, 1155, 1178, 2138, 3156 |
| NciI | CCSGG | 3 cut(s) | 590, 825, 3075 |
| NcoI | CCATGG | 1 cut(s) | 3207 |
| NdeII | GATC | 9 cut(s) | 535, 773, 1188, 2148, 2173, 2626, 2661, 2851, 2890 |
| NheI | GCTAGC | 2 cut(s) | 934, 2875 |
| NmuCI | GTSAC | 3 cut(s) | 55, 1157, 2472 |
| NspI | RCATGY | 4 cut(s) | 449, 658, 1652, 2147 |
| PaeR7I | CTCGAG | 1 cut(s) | 60 |
| PagI | TCATGA | 4 cut(s) | 705, 1614, 2058, 2812 |
| PceI | AGGCCT | 1 cut(s) | 1153 |
| PciI | ACATGT | 4 cut(s) | 445, 654, 1648, 2143 |
| PciSI | GCTCTTC | 1 cut(s) | 1105 |
| PctI | GAATGC | 1 cut(s) | 1834 |
| PfeI | GAWTC | 4 cut(s) | 964, 1388, 1731, 2653 |
| PfoI | TCCNGGA | 1 cut(s) | 588 |
| PinAI | ACCGGT | 1 cut(s) | 2806 |
| PleI | GAGTC | 2 cut(s) | 106, 1978 |
| PpsI | GAGTC | 2 cut(s) | 106, 1978 |
| Ppu21I | YACGTR | 1 cut(s) | 1378 |
| PpuMI | RGGWCCY | 3 cut(s) | 167, 230, 1321 |
| PscI | ACATGT | 4 cut(s) | 445, 654, 1648, 2143 |
| Psp124BI | GAGCTC | 1 cut(s) | 1614 |
| Psp5II | RGGWCCY | 3 cut(s) | 167, 230, 1321 |
| Psp6I | CCWGG | 6 cut(s) | 93, 181, 1153, 1176, 2136, 3154 |
| PspFI | CCCAGC | 4 cut(s) | 71, 355, 1315, 3013 |
| PspGI | CCWGG | 6 cut(s) | 93, 181, 1153, 1176, 2136, 3154 |
| PspOMI | GGGCCC | 2 cut(s) | 819, 2118 |
| PspPPI | RGGWCCY | 3 cut(s) | 167, 230, 1321 |
| PspXI | VCTCGAGB | 1 cut(s) | 60 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2559, 2591 |
| PstI | CTGCAG | 2 cut(s) | 1078, 3315 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2753, 2855 |
| PsuI | RGATCY | 5 cut(s) | 535, 773, 2173, 2851, 2890 |
| RsaI | GTAC | 9 cut(s) | 653, 920, 1080, 1221, 1380, 1653, 1890, 1934, 2389 |
| RsaNI | GTAC | 9 cut(s) | 652, 919, 1079, 1220, 1379, 1652, 1889, 1933, 2388 |
| RseI | CAYNNNNRTG | 4 cut(s) | 683, 1619, 2817, 3206 |
| SacI | GAGCTC | 1 cut(s) | 1614 |
| SapI | GCTCTTC | 1 cut(s) | 1105 |
| Sau3AI | GATC | 9 cut(s) | 535, 773, 1188, 2148, 2173, 2626, 2661, 2851, 2890 |
| SchI | GAGTC | 2 cut(s) | 106, 1978 |
| ScrFI | CCNGG | 9 cut(s) | 95, 183, 590, 825, 1155, 1178, 2138, 3075, 3156 |
| SduI | GDGCHC | 6 cut(s) | 823, 999, 1377, 1536, 1614, 2122 |
| SfaNI | GCATC | 9 cut(s) | 463, 1406, 1688, 2004, 2202, 2431, 2614, 2746, 3208 |
| SfcI | CTRYAG | 5 cut(s) | 1074, 1507, 1863, 2349, 3311 |
| Sfr274I | CTCGAG | 1 cut(s) | 60 |
| SinI | GGWCC | 8 cut(s) | 167, 179, 200, 230, 793, 1043, 1321, 2634 |
| SlaI | CTCGAG | 1 cut(s) | 60 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 683, 1619, 2817, 3206 |
| SmlI | CTYRAG | 6 cut(s) | 60, 76, 339, 765, 1361, 1921 |
| SmoI | CTYRAG | 6 cut(s) | 60, 76, 339, 765, 1361, 1921 |
| SpeI | ACTAGT | 1 cut(s) | 1381 |
| SseBI | AGGCCT | 1 cut(s) | 1153 |
| SsiI | CCGC | 2 cut(s) | 641, 887 |
| SspI | AATATT | 1 cut(s) | 569 |
| SstI | GAGCTC | 1 cut(s) | 1614 |
| StuI | AGGCCT | 1 cut(s) | 1153 |
| StyD4I | CCNGG | 9 cut(s) | 93, 181, 588, 823, 1153, 1176, 2136, 3073, 3154 |
| StyI | CCWWGG | 5 cut(s) | 750, 908, 939, 2242, 3207 |
| TaaI | ACNGT | 5 cut(s) | 47, 1511, 1634, 1840, 2790 |
| TaiI | ACGT | 3 cut(s) | 57, 377, 1380 |
| TaqI | TCGA | 1 cut(s) | 61 |
| TatI | WGTACW | 5 cut(s) | 1078, 1219, 1651, 1888, 2387 |
| TfiI | GAWTC | 4 cut(s) | 964, 1388, 1731, 2653 |
| TscAI | CASTG | 5 cut(s) | 52, 1639, 2158, 2175, 2886 |
| TseFI | GTSAC | 3 cut(s) | 55, 1157, 2472 |
| Tsp45I | GTSAC | 3 cut(s) | 55, 1157, 2472 |
| TspRI | CASTG | 5 cut(s) | 52, 1639, 2158, 2175, 2886 |
| Vha464I | CTTAAG | 2 cut(s) | 1361, 1921 |
| VneI | GTGCAC | 2 cut(s) | 995, 1373 |
| VpaK11BI | GGWCC | 8 cut(s) | 167, 179, 200, 230, 793, 1043, 1321, 2634 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 754, 1023, 1542 |
| XapI | RAATTY | 6 cut(s) | 512, 1603, 1625, 2423, 2616, 2908 |
| XbaI | TCTAGA | 1 cut(s) | 980 |
| XceI | RCATGY | 4 cut(s) | 449, 658, 1652, 2147 |
| XhoI | CTCGAG | 1 cut(s) | 60 |
| XmaJI | CCTAGG | 1 cut(s) | 908 |
| XmiI | GTMKAC | 1 cut(s) | 3079 |