Rw2G007910

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000756
Physical Location & Seq
Reverse (-)
7754908 .. 7755552
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007910.1

Sequence Viewer

Length: 645 bp
ATGAGCCCTTTTCAAGCTCTATATGGATATCAGCCCCCCTCAGTAGCTCCTTATTTGCCTGGTTCTACAGCAGTTGCACTAGTTGACAAACAATTGCAAAAAAGAGACAACTTGCTCGCTTTACTCAAGAGAAATCTGCAACTCGCTCAGTCAAGGATGAAAACTTTCTATGACAAGAAACACACAGAGAGGGAGTTTACAGTGGATGATTGGGTGTATCTTAAGCTACAACCTTATAGACAACAATCTGTGCATCAACATGACCTGCACAAGCTCTCTCCCAGGTACTATGGACCTTACAAAATCCTTGAAAAGATTGGGAAGGTTGCCTATAGACTCCAGCTGCCACCCTCAGCCAAAATACATAATGTCTTCCATGTATCTCTTCTAAAGAAAAAAATTGGGAATTCTGTGACTCCTTCTGCTCAGTTGCCGTTTGTGATAGACTCAGACAATCCTAAATGGGCACCTGAAGCTATACTGCAGAGGAGAATTTTCAAAAAAAATGGTGCTGCTGCTACCCAATGGTTAGTGCAATGGTTTGGTGCTTCTCCAGAAGAAGCCACATGGGAAGATGCAGCTGTGATACAACTGCGATTCCCAAATTTTGACCCGGAGGCTTCCTCGCGTACTCACCACGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

214

Amino Acids

24.62

Weight (kDa)

9.74

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 70 - 133 5.2e-25 Tf2-1-like, SH3 domain
Integrase_p58_C PF22938 98 - 132 2.8e-09 Integrase p58, C-terminal domain
Chromo PF00385 155 - 201 7.8e-08 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 466
AccII CGCG 1 cut(s) 628
AcsI RAATTY 3 cut(s) 406, 492, 604
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 2 cut(s) 287, 631
AflII CTTAAG 1 cut(s) 221
AgsI TTSAA 3 cut(s) 14, 311, 499
AhlI ACTAGT 1 cut(s) 79
AjnI CCWGG 2 cut(s) 58, 281
AluBI AGCT 7 cut(s) 17, 47, 226, 274, 343, 476, 581
AluI AGCT 7 cut(s) 17, 47, 226, 274, 343, 476, 581
Alw26I GTCTC 1 cut(s) 99
ApeKI GCWGC 4 cut(s) 343, 512, 515, 578
ApoI RAATTY 3 cut(s) 406, 492, 604
Asp700I GAANNNNTTC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 1 cut(s) 626
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 469
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 364
BbvCI CCTCAGC 1 cut(s) 352
BbvI GCAGC 4 cut(s) 330, 499, 502, 590
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 2 cut(s) 60, 283
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 1 cut(s) 99
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 3 cut(s) 66, 331, 482
BfrI CTTAAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 4 cut(s) 344, 513, 516, 579
BlsI GCNGC 4 cut(s) 345, 514, 517, 580
Bme1390I CCNGG 3 cut(s) 60, 283, 614
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 3 cut(s) 60, 283, 614
BmsI GCATC 2 cut(s) 262, 565
BpiI GAAGAC 1 cut(s) 364
BplI GAGNNNNNCTC 2 cut(s) 608, 640
BpmI CTGGAG 2 cut(s) 323, 537
Bpu10I CCTNAGC 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 614
BsaJI CCNNGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 542
BseBI CCWGG 2 cut(s) 60, 283
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 162, 211
BseMI GCAATG 1 cut(s) 542
BseMII CTCAG 5 cut(s) 54, 161, 366, 440, 462
BseRI GAGGAG 1 cut(s) 502
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 4 cut(s) 330, 499, 502, 590
BsgI GTGCAG 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 628
BshNI GGYRCC 1 cut(s) 466
BsiSI CCGG 1 cut(s) 614
BsmAI GTCTC 1 cut(s) 99
Bsp1286I GDGCHC 2 cut(s) 8, 469
BspCNI CTCAG 5 cut(s) 53, 160, 365, 439, 461
BspFNI CGCG 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 468
BspMAI CTGCAG 1 cut(s) 486
BspMI ACCTGC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 466
BspTI CTTAAG 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 60, 283
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 390
BstAFI CTTAAG 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 5 cut(s) 40, 147, 352, 426, 448
BstF5I GGATG 2 cut(s) 162, 211
BstFNI CGCG 1 cut(s) 628
BstMAI GTCTC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstNI CCWGG 2 cut(s) 60, 283
BstSCI CCNGG 3 cut(s) 58, 281, 612
BstSFI CTRYAG 3 cut(s) 66, 331, 482
BstSLI GKGCMC 1 cut(s) 469
BstUI CGCG 1 cut(s) 628
BstV1I GCAGC 4 cut(s) 330, 499, 502, 590
BstV2I GAAGAC 1 cut(s) 364
BtsCI GGATG 2 cut(s) 162, 211
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 2 cut(s) 286, 630
CviAII CATG 3 cut(s) 260, 377, 567
CviQI GTAC 2 cut(s) 286, 630
DdeI CTNAG 5 cut(s) 40, 147, 352, 426, 448
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 8
Eco32I GATATC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 492
EcoRI GAATTC 1 cut(s) 406
EcoRII CCWGG 2 cut(s) 58, 281
EcoRV GATATC 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 3 cut(s) 263, 380, 570
FatI CATG 3 cut(s) 259, 376, 566
Fnu4HI GCNGC 4 cut(s) 344, 513, 516, 579
FokI GGATG 2 cut(s) 169, 218
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 344, 513, 516, 579
FspBI CTAG 1 cut(s) 80
GluI GCNGC 4 cut(s) 344, 513, 516, 579
GsuI CTGGAG 2 cut(s) 323, 537
HapII CCGG 1 cut(s) 614
Hin1II CATG 3 cut(s) 263, 380, 570
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 4 cut(s) 336, 415, 446, 597
HpaII CCGG 1 cut(s) 614
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 2 cut(s) 85, 198
Hpy188I TCNGA 1 cut(s) 451
Hpy188III TCNNGA 2 cut(s) 127, 554
Hpy8I GTNNAC 2 cut(s) 85, 198
HpyAV CCTTC 2 cut(s) 316, 429
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 8 cut(s) 77, 97, 139, 253, 268, 484, 535, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 5 cut(s) 40, 147, 352, 426, 448
Hsp92II CATG 3 cut(s) 263, 380, 570
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 9 cut(s) 45, 72, 268, 278, 295, 353, 483, 567, 627
Lsp1109I GCAGC 4 cut(s) 330, 499, 502, 590
LweI GCATC 2 cut(s) 262, 565
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 412
MboII GAAGA 4 cut(s) 364, 377, 569, 584
MfeI CAATTG 1 cut(s) 92
MhlI GDGCHC 2 cut(s) 8, 469
MluCI AATT 5 cut(s) 92, 399, 406, 492, 604
MlyI GAGTC 3 cut(s) 330, 409, 440
MnlI CCTC 6 cut(s) 49, 183, 361, 480, 610, 634
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 2 cut(s) 343, 581
MspCI CTTAAG 1 cut(s) 221
MspI CCGG 1 cut(s) 614
MspR9I CCNGG 3 cut(s) 60, 283, 614
MunI CAATTG 1 cut(s) 92
MvaI CCWGG 2 cut(s) 60, 283
MvnI CGCG 1 cut(s) 628
MwoI GCNNNNNNNGC 1 cut(s) 473
NciI CCSGG 1 cut(s) 614
NlaIII CATG 3 cut(s) 263, 380, 570
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 597
PkrI GCNGC 4 cut(s) 345, 514, 517, 580
PleI GAGTC 3 cut(s) 330, 409, 440
PpsI GAGTC 3 cut(s) 330, 409, 440
Psp6I CCWGG 2 cut(s) 58, 281
PspGI CCWGG 2 cut(s) 58, 281
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 293
PstI CTGCAG 1 cut(s) 486
PvuII CAGCTG 2 cut(s) 343, 581
RsaI GTAC 2 cut(s) 287, 631
RsaNI GTAC 2 cut(s) 286, 630
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 4 cut(s) 344, 513, 516, 579
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 3 cut(s) 330, 409, 440
ScrFI CCNGG 3 cut(s) 60, 283, 614
SduI GDGCHC 2 cut(s) 8, 469
SfaNI GCATC 2 cut(s) 262, 565
SfcI CTRYAG 3 cut(s) 66, 331, 482
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 125, 221
SmoI CTYRAG 2 cut(s) 125, 221
SpeI ACTAGT 1 cut(s) 79
Sse9I AATT 5 cut(s) 92, 399, 406, 492, 604
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 3 cut(s) 58, 281, 612
TaaI ACNGT 1 cut(s) 202
TasI AATT 5 cut(s) 92, 399, 406, 492, 604
TfiI GAWTC 1 cut(s) 597
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 4 cut(s) 343, 512, 515, 578
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 173
TspRI CASTG 1 cut(s) 207
Vha464I CTTAAG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 3 cut(s) 406, 492, 604
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.