transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 102 - 262 | 7.1e-41 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 324 - 418 | 2e-31 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 349 - 448 | 5.2e-29 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 537 - 588 | 7e-15 | Integrase zinc binding domain |
| SH3_Tf2-1 | PF24626 | 777 - 840 | 1.6e-22 | Tf2-1-like, SH3 domain |
| Integrase_p58_C | PF22938 | 806 - 840 | 7.7e-06 | Integrase p58, C-terminal domain |
| Chromo | PF00385 | 863 - 910 | 4.7e-06 | Chromo (CHRromatin Organisation MOdifier) domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 136 |
| Acc36I | ACCTGC | 3 cut(s) | 34, 136, 2709 |
| Acc65I | GGTACC | 1 cut(s) | 198 |
| AccB1I | GGYRCC | 1 cut(s) | 198 |
| AciI | CCGC | 2 cut(s) | 359, 1208 |
| AclWI | GGATC | 6 cut(s) | 803, 1439, 2194, 2217, 2452, 2536 |
| AcoI | YGGCCR | 2 cut(s) | 1035, 1651 |
| AcsI | RAATTY | 4 cut(s) | 594, 1581, 1730, 2002 |
| AcuI | CTGAAG | 4 cut(s) | 637, 1033, 2553, 2616 |
| AfaI | GTAC | 9 cut(s) | 24, 200, 380, 417, 608, 1590, 2027, 2096, 2699 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 388, 664, 1428, 1601, 1680 |
| AflII | CTTAAG | 1 cut(s) | 2249 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 272 |
| AjiI | CACGTC | 1 cut(s) | 2503 |
| AjnI | CCWGG | 4 cut(s) | 1705, 1786, 2182, 2259 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 488, 520, 2000, 2032 |
| AleI | CACNNNNGTG | 1 cut(s) | 1028 |
| Alw21I | GWGCWC | 3 cut(s) | 246, 352, 2272 |
| Alw26I | GTCTC | 5 cut(s) | 129, 675, 1216, 2325, 2509 |
| AlwI | GGATC | 6 cut(s) | 803, 1439, 2194, 2217, 2452, 2536 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 26 |
| AoxI | GGCC | 4 cut(s) | 1035, 1149, 1651, 1703 |
| ApeKI | GCWGC | 9 cut(s) | 679, 862, 980, 1382, 1418, 1519, 1952, 2636, 2639 |
| ApoI | RAATTY | 4 cut(s) | 594, 1581, 1730, 2002 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1568, 1600, 2303, 2335 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 514, 693 |
| Asp718I | GGTACC | 1 cut(s) | 198 |
| AspS9I | GGNCC | 2 cut(s) | 1150, 2417 |
| AsuHPI | GGTGA | 6 cut(s) | 282, 373, 455, 1564, 2099, 2552 |
| AvaII | GGWCC | 1 cut(s) | 2417 |
| AxyI | CCTNAGG | 1 cut(s) | 2030 |
| BalI | TGGCCA | 2 cut(s) | 1037, 1653 |
| BanI | GGYRCC | 1 cut(s) | 198 |
| BanII | GRGCYC | 3 cut(s) | 246, 352, 2272 |
| Bbv12I | GWGCWC | 3 cut(s) | 246, 352, 2272 |
| BbvI | GCAGC | 9 cut(s) | 691, 874, 967, 1394, 1405, 1531, 1939, 2626, 2648 |
| BccI | CCATC | 9 cut(s) | 311, 1361, 1417, 1430, 1595, 1695, 1865, 1982, 2591 |
| BciT130I | CCWGG | 4 cut(s) | 1707, 1788, 2184, 2261 |
| BclI | TGATCA | 2 cut(s) | 1326, 2655 |
| BcoDI | GTCTC | 5 cut(s) | 129, 675, 1216, 2325, 2509 |
| BfaI | CTAG | 9 cut(s) | 270, 302, 536, 878, 1163, 1307, 1401, 1668, 2277 |
| BfmI | CTRYAG | 4 cut(s) | 14, 804, 2193, 2448 |
| BfrI | CTTAAG | 1 cut(s) | 2249 |
| BfuAI | ACCTGC | 3 cut(s) | 34, 136, 2709 |
| BisI | GCNGC | 9 cut(s) | 680, 863, 981, 1383, 1419, 1520, 1953, 2637, 2640 |
| BlsI | GCNGC | 9 cut(s) | 681, 864, 982, 1384, 1420, 1521, 1954, 2638, 2641 |
| Bme1390I | CCNGG | 4 cut(s) | 1707, 1788, 2184, 2261 |
| Bme18I | GGWCC | 1 cut(s) | 2417 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 272 |
| BmgBI | CACGTC | 1 cut(s) | 2503 |
| BmgT120I | GGNCC | 2 cut(s) | 1150, 2417 |
| BmiI | GGNNCC | 4 cut(s) | 200, 974, 2419, 2723 |
| BmrFI | CCNGG | 4 cut(s) | 1707, 1788, 2184, 2261 |
| BmrI | ACTGGG | 1 cut(s) | 2534 |
| BmsI | GCATC | 7 cut(s) | 531, 1066, 1088, 1381, 1395, 1770, 1964 |
| BmuI | ACTGGG | 1 cut(s) | 2534 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2368 |
| BpmI | CTGGAG | 4 cut(s) | 1240, 1627, 1728, 2282 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2271 |
| BpuEI | CTTGAG | 2 cut(s) | 935, 2447 |
| BsaI | GGTCTC | 2 cut(s) | 129, 1216 |
| BsaJI | CCNNGG | 2 cut(s) | 2016, 2078 |
| BsaWI | WCCGGW | 1 cut(s) | 388 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 319, 349, 2322, 2352 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 388, 664, 1428, 1601, 1680 |
| Bse1I | ACTGG | 8 cut(s) | 96, 1223, 1357, 1442, 1482, 1965, 2110, 2529 |
| Bse21I | CCTNAGG | 1 cut(s) | 2030 |
| Bse3DI | GCAATG | 1 cut(s) | 726 |
| BseBI | CCWGG | 4 cut(s) | 1707, 1788, 2184, 2261 |
| BseDI | CCNNGG | 2 cut(s) | 2016, 2078 |
| BseGI | GGATG | 6 cut(s) | 403, 1120, 1353, 1410, 1939, 2236 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 388, 664, 1428, 1601, 1680 |
| BseMI | GCAATG | 1 cut(s) | 726 |
| BseMII | CTCAG | 6 cut(s) | 66, 80, 2044, 2076, 2285, 2688 |
| BseNI | ACTGG | 8 cut(s) | 96, 1223, 1357, 1442, 1482, 1965, 2110, 2529 |
| BseRI | GAGGAG | 1 cut(s) | 616 |
| BseXI | GCAGC | 9 cut(s) | 691, 874, 967, 1394, 1405, 1531, 1939, 2626, 2648 |
| BseYI | CCCAGC | 2 cut(s) | 887, 1234 |
| BsgI | GTGCAG | 2 cut(s) | 698, 2655 |
| BshFI | GGCC | 4 cut(s) | 1037, 1151, 1653, 1705 |
| BshNI | GGYRCC | 1 cut(s) | 198 |
| BsiHKAI | GWGCWC | 3 cut(s) | 246, 352, 2272 |
| BsiSI | CCGG | 1 cut(s) | 389 |
| BslFI | GGGAC | 2 cut(s) | 96, 1251 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 388, 664, 1428, 1601, 1680 |
| BsmAI | GTCTC | 5 cut(s) | 129, 675, 1216, 2325, 2509 |
| BsmBI | CGTCTC | 1 cut(s) | 2509 |
| BsmFI | GGGAC | 2 cut(s) | 96, 1251 |
| BsmI | GAATGC | 1 cut(s) | 503 |
| BsnI | GGCC | 4 cut(s) | 1037, 1151, 1653, 1705 |
| Bso31I | GGTCTC | 2 cut(s) | 129, 1216 |
| Bsp1286I | GDGCHC | 3 cut(s) | 246, 352, 2272 |
| Bsp19I | CCATGG | 1 cut(s) | 2078 |
| BspACI | CCGC | 2 cut(s) | 359, 1208 |
| BspANI | GGCC | 4 cut(s) | 1037, 1151, 1653, 1705 |
| BspCNI | CTCAG | 6 cut(s) | 65, 79, 2043, 2077, 2284, 2687 |
| BspHI | TCATGA | 2 cut(s) | 585, 1134 |
| BspLI | GGNNCC | 4 cut(s) | 200, 974, 2419, 2723 |
| BspMAI | CTGCAG | 1 cut(s) | 2197 |
| BspMI | ACCTGC | 3 cut(s) | 34, 136, 2709 |
| BspPI | GGATC | 6 cut(s) | 803, 1439, 2194, 2217, 2452, 2536 |
| BspQI | GCTCTTC | 1 cut(s) | 2079 |
| BspT107I | GGYRCC | 1 cut(s) | 198 |
| BspTI | CTTAAG | 1 cut(s) | 2249 |
| BspTNI | GGTCTC | 2 cut(s) | 129, 1216 |
| BsrDI | GCAATG | 1 cut(s) | 726 |
| BsrI | ACTGG | 8 cut(s) | 96, 1223, 1357, 1442, 1482, 1965, 2110, 2529 |
| BssECI | CCNNGG | 2 cut(s) | 2016, 2078 |
| BssT1I | CCWWGG | 2 cut(s) | 2016, 2078 |
| Bst2UI | CCWGG | 4 cut(s) | 1707, 1788, 2184, 2261 |
| Bst6I | CTCTTC | 1 cut(s) | 2079 |
| BstAFI | CTTAAG | 1 cut(s) | 2249 |
| BstC8I | GCNNGC | 3 cut(s) | 1477, 2070, 2472 |
| BstDSI | CCRYGG | 1 cut(s) | 2078 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1678 |
| BstF5I | GGATG | 6 cut(s) | 403, 1120, 1353, 1410, 1939, 2236 |
| BstMAI | GTCTC | 5 cut(s) | 129, 675, 1216, 2325, 2509 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 10, 356, 500, 800, 989, 1391, 1664, 1961 |
| BstNI | CCWGG | 4 cut(s) | 1707, 1788, 2184, 2261 |
| BstNSI | RCATGY | 2 cut(s) | 719, 949 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2368 |
| BstSCI | CCNGG | 4 cut(s) | 1705, 1786, 2182, 2259 |
| BstSFI | CTRYAG | 4 cut(s) | 14, 804, 2193, 2448 |
| BstV1I | GCAGC | 9 cut(s) | 691, 874, 967, 1394, 1405, 1531, 1939, 2626, 2648 |
| BstX2I | RGATCY | 5 cut(s) | 808, 1431, 2186, 2444, 2528 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1824, 2061 |
| BstYI | RGATCY | 5 cut(s) | 808, 1431, 2186, 2444, 2528 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2030 |
| BsuRI | GGCC | 4 cut(s) | 1037, 1151, 1653, 1705 |
| BtgI | CCRYGG | 1 cut(s) | 2078 |
| BtrI | CACGTC | 1 cut(s) | 2503 |
| BtsCI | GGATG | 6 cut(s) | 403, 1120, 1353, 1410, 1939, 2236 |
| BtsI | GCAGTG | 3 cut(s) | 842, 1203, 2202 |
| BveI | ACCTGC | 3 cut(s) | 34, 136, 2709 |
| Cac8I | GCNNGC | 3 cut(s) | 1477, 2070, 2472 |
| CaiI | CAGNNNCTG | 1 cut(s) | 26 |
| CciI | TCATGA | 2 cut(s) | 585, 1134 |
| Cfr13I | GGNCC | 2 cut(s) | 1150, 2417 |
| CsiI | ACCWGGT | 1 cut(s) | 1786 |
| Csp6I | GTAC | 9 cut(s) | 23, 199, 379, 416, 607, 1589, 2026, 2095, 2698 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1301, 1336, 1773, 1808 |
| CviQI | GTAC | 9 cut(s) | 23, 199, 379, 416, 607, 1589, 2026, 2095, 2698 |
| DraI | TTTAAA | 1 cut(s) | 1005 |
| DriI | GACNNNNNGTC | 1 cut(s) | 272 |
| EaeI | YGGCCR | 2 cut(s) | 1035, 1651 |
| Eam1104I | CTCTTC | 1 cut(s) | 2079 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 1 cut(s) | 2079 |
| Ecl136II | GAGCTC | 3 cut(s) | 244, 350, 2270 |
| Eco130I | CCWWGG | 2 cut(s) | 2016, 2078 |
| Eco24I | GRGCYC | 3 cut(s) | 246, 352, 2272 |
| Eco31I | GGTCTC | 2 cut(s) | 129, 1216 |
| Eco47I | GGWCC | 1 cut(s) | 2417 |
| Eco53kI | GAGCTC | 3 cut(s) | 244, 350, 2270 |
| Eco57I | CTGAAG | 4 cut(s) | 637, 1033, 2553, 2616 |
| Eco81I | CCTNAGG | 1 cut(s) | 2030 |
| EcoICRI | GAGCTC | 3 cut(s) | 244, 350, 2270 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1678 |
| EcoRII | CCWGG | 4 cut(s) | 1705, 1786, 2182, 2259 |
| EcoT14I | CCWWGG | 2 cut(s) | 2016, 2078 |
| EcoT22I | ATGCAT | 1 cut(s) | 1081 |
| EcoT38I | GRGCYC | 3 cut(s) | 246, 352, 2272 |
| ErhI | CCWWGG | 2 cut(s) | 2016, 2078 |
| Esp3I | CGTCTC | 1 cut(s) | 2509 |
| FaqI | GGGAC | 2 cut(s) | 96, 1251 |
| FbaI | TGATCA | 2 cut(s) | 1326, 2655 |
| Fnu4HI | GCNGC | 9 cut(s) | 680, 863, 981, 1383, 1419, 1520, 1953, 2637, 2640 |
| FokI | GGATG | 6 cut(s) | 410, 1107, 1340, 1417, 1926, 2243 |
| FriOI | GRGCYC | 3 cut(s) | 246, 352, 2272 |
| Fsp4HI | GCNGC | 9 cut(s) | 680, 863, 981, 1383, 1419, 1520, 1953, 2637, 2640 |
| FspBI | CTAG | 9 cut(s) | 270, 302, 536, 878, 1163, 1307, 1401, 1668, 2277 |
| GluI | GCNGC | 9 cut(s) | 680, 863, 981, 1383, 1419, 1520, 1953, 2637, 2640 |
| GsaI | CCCAGC | 2 cut(s) | 891, 1238 |
| GsuI | CTGGAG | 4 cut(s) | 1240, 1627, 1728, 2282 |
| HaeIII | GGCC | 4 cut(s) | 1037, 1151, 1653, 1705 |
| HapII | CCGG | 1 cut(s) | 389 |
| HincII | GTYRAC | 1 cut(s) | 61 |
| HindII | GTYRAC | 1 cut(s) | 61 |
| HindIII | AAGCTT | 3 cut(s) | 1331, 1473, 1854 |
| HinfI | GANTC | 7 cut(s) | 7, 258, 552, 668, 694, 1288, 1982 |
| HpaII | CCGG | 1 cut(s) | 389 |
| HphI | GGTGA | 6 cut(s) | 282, 373, 455, 1564, 2099, 2552 |
| Hpy166II | GTNNAC | 3 cut(s) | 61, 1555, 2377 |
| Hpy188III | TCNNGA | 9 cut(s) | 239, 519, 586, 952, 1135, 1249, 1979, 2213, 2587 |
| Hpy8I | GTNNAC | 3 cut(s) | 61, 1555, 2377 |
| HpyAV | CCTTC | 9 cut(s) | 92, 472, 576, 669, 822, 949, 1109, 1141, 2622 |
| HpyCH4IV | ACGT | 1 cut(s) | 2502 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 10, 356, 500, 800, 989, 1391, 1664, 1961 |
| HpySE526I | ACGT | 1 cut(s) | 2502 |
| KpnI | GGTACC | 1 cut(s) | 202 |
| Ksp22I | TGATCA | 2 cut(s) | 1326, 2655 |
| LguI | GCTCTTC | 1 cut(s) | 2079 |
| LmnI | GCTCC | 5 cut(s) | 241, 972, 1097, 2020, 2355 |
| Lsp1109I | GCAGC | 9 cut(s) | 691, 874, 967, 1394, 1405, 1531, 1939, 2626, 2648 |
| LweI | GCATC | 7 cut(s) | 531, 1066, 1088, 1381, 1395, 1770, 1964 |
| MabI | ACCWGGT | 1 cut(s) | 1786 |
| MaeI | CTAG | 9 cut(s) | 270, 302, 536, 878, 1163, 1307, 1401, 1668, 2277 |
| MaeII | ACGT | 1 cut(s) | 2502 |
| MaeIII | GTNAC | 5 cut(s) | 156, 361, 1107, 1935, 2536 |
| MboII | GAAGA | 9 cut(s) | 241, 279, 424, 497, 643, 2066, 2266, 2296, 2693 |
| MfeI | CAATTG | 1 cut(s) | 2118 |
| MflI | RGATCY | 5 cut(s) | 808, 1431, 2186, 2444, 2528 |
| MhlI | GDGCHC | 3 cut(s) | 246, 352, 2272 |
| MlsI | TGGCCA | 2 cut(s) | 1037, 1653 |
| MluNI | TGGCCA | 2 cut(s) | 1037, 1653 |
| MlyI | GAGTC | 4 cut(s) | 267, 546, 677, 1991 |
| MmeI | TCCRAC | 2 cut(s) | 423, 2377 |
| Mox20I | TGGCCA | 2 cut(s) | 1037, 1653 |
| Mph1103I | ATGCAT | 1 cut(s) | 1081 |
| MroXI | GAANNNNTTC | 2 cut(s) | 514, 693 |
| MscI | TGGCCA | 2 cut(s) | 1037, 1653 |
| MseI | TTAA | 8 cut(s) | 306, 729, 857, 909, 966, 1004, 1016, 2250 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1028 |
| Msp20I | TGGCCA | 2 cut(s) | 1037, 1653 |
| MspA1I | CMGCKG | 3 cut(s) | 1208, 1952, 2639 |
| MspCI | CTTAAG | 1 cut(s) | 2249 |
| MspI | CCGG | 1 cut(s) | 389 |
| MspR9I | CCNGG | 4 cut(s) | 1707, 1788, 2184, 2261 |
| MunI | CAATTG | 1 cut(s) | 2118 |
| Mva1269I | GAATGC | 1 cut(s) | 503 |
| MvaI | CCWGG | 4 cut(s) | 1707, 1788, 2184, 2261 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 10, 356, 500, 800, 989, 1391, 1664, 1961 |
| NcoI | CCATGG | 1 cut(s) | 2078 |
| NlaIV | GGNNCC | 4 cut(s) | 200, 974, 2419, 2723 |
| NmuCI | GTSAC | 4 cut(s) | 361, 1107, 1935, 2536 |
| NsiI | ATGCAT | 1 cut(s) | 1081 |
| NspI | RCATGY | 2 cut(s) | 719, 949 |
| OliI | CACNNNNGTG | 1 cut(s) | 1028 |
| PagI | TCATGA | 2 cut(s) | 585, 1134 |
| PaqCI | CACCTGC | 1 cut(s) | 136 |
| PciSI | GCTCTTC | 1 cut(s) | 2079 |
| PctI | GAATGC | 1 cut(s) | 503 |
| PdmI | GAANNNNTTC | 2 cut(s) | 514, 693 |
| PfeI | GAWTC | 3 cut(s) | 7, 694, 1288 |
| PflFI | GACNNNGTC | 1 cut(s) | 2336 |
| PkrI | GCNGC | 9 cut(s) | 681, 864, 982, 1384, 1420, 1521, 1954, 2638, 2641 |
| PleI | GAGTC | 4 cut(s) | 266, 546, 676, 1990 |
| PpsI | GAGTC | 4 cut(s) | 266, 546, 676, 1990 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2368 |
| Psp124BI | GAGCTC | 3 cut(s) | 246, 352, 2272 |
| Psp6I | CCWGG | 4 cut(s) | 1705, 1786, 2182, 2259 |
| PspFI | CCCAGC | 2 cut(s) | 887, 1234 |
| PspGI | CCWGG | 4 cut(s) | 1705, 1786, 2182, 2259 |
| PspN4I | GGNNCC | 4 cut(s) | 200, 974, 2419, 2723 |
| PspPI | GGNCC | 2 cut(s) | 1150, 2417 |
| PstI | CTGCAG | 1 cut(s) | 2197 |
| PstNI | CAGNNNCTG | 1 cut(s) | 26 |
| PsuI | RGATCY | 5 cut(s) | 808, 1431, 2186, 2444, 2528 |
| PsyI | GACNNNGTC | 1 cut(s) | 2336 |
| PvuII | CAGCTG | 2 cut(s) | 1952, 2639 |
| RsaI | GTAC | 9 cut(s) | 24, 200, 380, 417, 608, 1590, 2027, 2096, 2699 |
| RsaNI | GTAC | 9 cut(s) | 23, 199, 379, 416, 607, 1589, 2026, 2095, 2698 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1028 |
| SacI | GAGCTC | 3 cut(s) | 246, 352, 2272 |
| SapI | GCTCTTC | 1 cut(s) | 2079 |
| SaqAI | TTAA | 8 cut(s) | 306, 729, 857, 909, 966, 1004, 1016, 2250 |
| SatI | GCNGC | 9 cut(s) | 680, 863, 981, 1383, 1419, 1520, 1953, 2637, 2640 |
| Sau96I | GGNCC | 2 cut(s) | 1150, 2417 |
| SchI | GAGTC | 4 cut(s) | 267, 546, 677, 1991 |
| ScrFI | CCNGG | 4 cut(s) | 1707, 1788, 2184, 2261 |
| SduI | GDGCHC | 3 cut(s) | 246, 352, 2272 |
| SexAI | ACCWGGT | 1 cut(s) | 1786 |
| SfaNI | GCATC | 7 cut(s) | 531, 1066, 1088, 1381, 1395, 1770, 1964 |
| SfcI | CTRYAG | 4 cut(s) | 14, 804, 2193, 2448 |
| SinI | GGWCC | 1 cut(s) | 2417 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1028 |
| SmlI | CTYRAG | 3 cut(s) | 950, 2249, 2462 |
| SmoI | CTYRAG | 3 cut(s) | 950, 2249, 2462 |
| SsiI | CCGC | 2 cut(s) | 359, 1208 |
| SspMI | CTAG | 9 cut(s) | 270, 302, 536, 878, 1163, 1307, 1401, 1668, 2277 |
| SstI | GAGCTC | 3 cut(s) | 246, 352, 2272 |
| StyD4I | CCNGG | 4 cut(s) | 1705, 1786, 2182, 2259 |
| StyI | CCWWGG | 2 cut(s) | 2016, 2078 |
| TaiI | ACGT | 1 cut(s) | 2505 |
| TatI | WGTACW | 1 cut(s) | 415 |
| TfiI | GAWTC | 3 cut(s) | 7, 694, 1288 |
| Tru1I | TTAA | 8 cut(s) | 306, 729, 857, 909, 966, 1004, 1016, 2250 |
| Tru9I | TTAA | 8 cut(s) | 306, 729, 857, 909, 966, 1004, 1016, 2250 |
| TseFI | GTSAC | 4 cut(s) | 361, 1107, 1935, 2536 |
| TseI | GCWGC | 9 cut(s) | 679, 862, 980, 1382, 1418, 1519, 1952, 2636, 2639 |
| Tsp45I | GTSAC | 4 cut(s) | 361, 1107, 1935, 2536 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2336 |
| Vha464I | CTTAAG | 1 cut(s) | 2249 |
| VpaK11BI | GGWCC | 1 cut(s) | 2417 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1678 |
| XapI | RAATTY | 4 cut(s) | 594, 1581, 1730, 2002 |
| XceI | RCATGY | 2 cut(s) | 719, 949 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 391, 1030, 1364, 2085 |
| XmnI | GAANNNNTTC | 2 cut(s) | 514, 693 |
| XspI | CTAG | 9 cut(s) | 270, 302, 536, 878, 1163, 1307, 1401, 1668, 2277 |
| Zsp2I | ATGCAT | 1 cut(s) | 1081 |