Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Reverse (-)

49175025 .. 49180562

Gene Structure 5538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTCTCTCCTATTTACCTTTGTAGCAATGGGTGAAGTTACAAAAGCAGATATCGAAGCTCTTACAGCAGCGTTTACCAAGAAATATGTAAAGAAGTGCAGTGTGGAAGAGGAACATGCAATTATAACTCCAGTGAGCCATTACTCTATACATGCGATTGCGAAACTGGATGGAAGTGAACCGCCGAAGGAAATGATTGTTTCAAGTTTTTCCCTTGTGTCATCCCTGACTGCAAGTACTTGGCTCTTTTGTTGTAGAAATCTGTGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

9.92

Weight (kDa)

6.26

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
AciI	CCGC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	204
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	9
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
BmcAI	AGTACT	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	131, 171
Bse3DI	GCAATG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	175, 221
BseMI	GCAATG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	131, 171
BseXI	GCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	131, 171
Bst6I	CTCTTC	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	175, 221
BstMAI	GTCTC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNSI	RCATGY	2 cut(s)	119, 155
BstV1I	GCAGC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	175, 221
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	106, 138
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	2 cut(s)	116, 152
CviJI	RGCY	3 cut(s)	59, 138, 244
CviKI_1	RGCY	3 cut(s)	59, 138, 244
CviQI	GTAC	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	52
FaeI	CATG	2 cut(s)	119, 155
FaiI	YATR	5 cut(s)	87, 117, 125, 149, 153
FatI	CATG	2 cut(s)	115, 151
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	2 cut(s)	182, 208
Fsp4HI	GCNGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	114
Hin1II	CATG	2 cut(s)	119, 155
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	75, 179
Hpy8I	GTNNAC	2 cut(s)	75, 179
HpyAV	CCTTC	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	99, 119, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	119, 155
LpnPI	CCDG	3 cut(s)	144, 152, 239
Lsp1109I	GCAGC	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	119
MluCI	AATT	1 cut(s)	120
MnlI	CCTC	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	119, 155
NspI	RCATGY	2 cut(s)	119, 155
PkrI	GCNGC	1 cut(s)	70
PsiI	TTATAA	1 cut(s)	125
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SatI	GCNGC	1 cut(s)	69
ScaI	AGTACT	1 cut(s)	238
SetI	ASST	2 cut(s)	20, 61
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	182
TaqI	TCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	236
TscAI	CASTG	2 cut(s)	106, 138
TseI	GCWGC	1 cut(s)	68
TspRI	CASTG	2 cut(s)	106, 138
XceI	RCATGY	2 cut(s)	119, 155
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.