transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ty3_capsid | PF19259 | 342 - 466 | 3.7e-10 | Ty3 transposon capsid-like protein |
| Retrotrans_gag | PF03732 | 355 - 442 | 1.4e-09 | Retrotransposon gag protein |
| RVP_2 | PF08284 | 605 - 701 | 9.1e-09 | Retroviral aspartyl protease |
| gag-asp_proteas | PF13975 | 613 - 701 | 5e-10 | gag-polyprotein putative aspartyl protease |
| Asp_protease_2 | PF13650 | 614 - 687 | 1.4e-07 | Aspartyl protease |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1786, 1990 |
| Acc65I | GGTACC | 2 cut(s) | 2445, 2705 |
| AccB1I | GGYRCC | 4 cut(s) | 26, 742, 2445, 2705 |
| AciI | CCGC | 4 cut(s) | 24, 137, 1521, 2201 |
| AclWI | GGATC | 6 cut(s) | 229, 250, 273, 286, 983, 1457 |
| AcoI | YGGCCR | 1 cut(s) | 309 |
| AcsI | RAATTY | 6 cut(s) | 71, 382, 729, 965, 1121, 2602 |
| AcuI | CTGAAG | 2 cut(s) | 1065, 2319 |
| AfaI | GTAC | 8 cut(s) | 803, 824, 1518, 2265, 2447, 2569, 2627, 2707 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1101, 1224, 1375, 1550, 1795, 2066 |
| AflIII | ACRYGT | 2 cut(s) | 479, 1756 |
| AgeI | ACCGGT | 1 cut(s) | 29 |
| AjnI | CCWGG | 7 cut(s) | 367, 738, 1194, 1276, 1590, 1654, 1720 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1949, 1981 |
| AleI | CACNNNNGTG | 2 cut(s) | 653, 681 |
| Alw21I | GWGCWC | 4 cut(s) | 1276, 1543, 1618, 2386 |
| Alw26I | GTCTC | 2 cut(s) | 45, 2266 |
| AlwI | GGATC | 6 cut(s) | 229, 250, 273, 286, 983, 1457 |
| Ama87I | CYCGRG | 1 cut(s) | 273 |
| AoxI | GGCC | 7 cut(s) | 35, 294, 309, 593, 1657, 2435, 2513 |
| ApeKI | GCWGC | 3 cut(s) | 158, 644, 1199 |
| ApoI | RAATTY | 6 cut(s) | 71, 382, 729, 965, 1121, 2602 |
| AsiGI | ACCGGT | 1 cut(s) | 29 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1647, 2256 |
| Asp718I | GGTACC | 2 cut(s) | 2445, 2705 |
| AspS9I | GGNCC | 8 cut(s) | 35, 593, 620, 716, 928, 1724, 2436, 2595 |
| AsuHPI | GGTGA | 7 cut(s) | 16, 65, 401, 882, 2517, 2529, 2743 |
| AvaI | CYCGRG | 1 cut(s) | 273 |
| AvaII | GGWCC | 5 cut(s) | 620, 716, 928, 1724, 2595 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 700, 733 |
| BalI | TGGCCA | 1 cut(s) | 311 |
| BamHI | GGATCC | 1 cut(s) | 278 |
| BanI | GGYRCC | 4 cut(s) | 26, 742, 2445, 2705 |
| BanII | GRGCYC | 1 cut(s) | 1543 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 147, 179 |
| Bbv12I | GWGCWC | 4 cut(s) | 1276, 1543, 1618, 2386 |
| BbvCI | CCTCAGC | 1 cut(s) | 933 |
| BbvI | GCAGC | 3 cut(s) | 145, 656, 1186 |
| BccI | CCATC | 8 cut(s) | 676, 790, 895, 922, 1678, 1915, 2558, 2717 |
| BceAI | ACGGC | 2 cut(s) | 22, 117 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1608, 1642 |
| BciT130I | CCWGG | 7 cut(s) | 369, 740, 1196, 1278, 1592, 1656, 1722 |
| BclI | TGATCA | 1 cut(s) | 391 |
| BcoDI | GTCTC | 2 cut(s) | 45, 2266 |
| BfaI | CTAG | 9 cut(s) | 146, 468, 498, 539, 1209, 1503, 1971, 2261, 2379 |
| BfmI | CTRYAG | 4 cut(s) | 153, 642, 679, 2440 |
| BfuAI | ACCTGC | 2 cut(s) | 1786, 1990 |
| BisI | GCNGC | 5 cut(s) | 25, 159, 645, 1200, 2202 |
| BlsI | GCNGC | 5 cut(s) | 26, 160, 646, 1201, 2203 |
| Bme1390I | CCNGG | 7 cut(s) | 369, 740, 1196, 1278, 1592, 1656, 1722 |
| Bme18I | GGWCC | 5 cut(s) | 620, 716, 928, 1724, 2595 |
| BmeT110I | CYCGRG | 1 cut(s) | 273 |
| BmgT120I | GGNCC | 8 cut(s) | 35, 593, 620, 716, 928, 1724, 2436, 2595 |
| BmiI | GGNNCC | 9 cut(s) | 28, 280, 594, 718, 744, 930, 2447, 2597, 2707 |
| BmrFI | CCNGG | 7 cut(s) | 369, 740, 1196, 1278, 1592, 1656, 1722 |
| BmsI | GCATC | 9 cut(s) | 111, 137, 263, 544, 1084, 1100, 1149, 1974, 2133 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 413, 445 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 933 |
| BsaI | GGTCTC | 1 cut(s) | 2266 |
| BsaJI | CCNNGG | 3 cut(s) | 291, 306, 1590 |
| BsaWI | WCCGGW | 2 cut(s) | 29, 50 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 820, 850, 978, 1008, 2566, 2596 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1101, 1224, 1375, 1550, 1795, 2066 |
| Bse118I | RCCGGY | 1 cut(s) | 29 |
| Bse1I | ACTGG | 6 cut(s) | 417, 865, 992, 1416, 2060, 2636 |
| Bse3DI | GCAATG | 1 cut(s) | 1062 |
| BseBI | CCWGG | 7 cut(s) | 369, 740, 1196, 1278, 1592, 1656, 1722 |
| BseDI | CCNNGG | 3 cut(s) | 291, 306, 1590 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1101, 1224, 1375, 1550, 1795, 2066 |
| BseMI | GCAATG | 1 cut(s) | 1062 |
| BseMII | CTCAG | 9 cut(s) | 212, 224, 446, 726, 947, 1367, 1587, 2327, 2457 |
| BseNI | ACTGG | 6 cut(s) | 417, 865, 992, 1416, 2060, 2636 |
| BseRI | GAGGAG | 1 cut(s) | 999 |
| BseXI | GCAGC | 3 cut(s) | 145, 656, 1186 |
| BsgI | GTGCAG | 2 cut(s) | 657, 1721 |
| BshFI | GGCC | 7 cut(s) | 37, 296, 311, 595, 1659, 2437, 2515 |
| BshNI | GGYRCC | 4 cut(s) | 26, 742, 2445, 2705 |
| BshTI | ACCGGT | 1 cut(s) | 29 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1276, 1543, 1618, 2386 |
| BsiHKCI | CYCGRG | 1 cut(s) | 273 |
| BsiSI | CCGG | 2 cut(s) | 30, 51 |
| BslFI | GGGAC | 3 cut(s) | 702, 1201, 2581 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1101, 1224, 1375, 1550, 1795, 2066 |
| BsmAI | GTCTC | 2 cut(s) | 45, 2266 |
| BsmBI | CGTCTC | 1 cut(s) | 45 |
| BsmFI | GGGAC | 3 cut(s) | 702, 1201, 2581 |
| BsnI | GGCC | 7 cut(s) | 37, 296, 311, 595, 1659, 2437, 2515 |
| Bso31I | GGTCTC | 1 cut(s) | 2266 |
| BsoBI | CYCGRG | 1 cut(s) | 273 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1276, 1543, 1618, 2386 |
| Bsp19I | CCATGG | 1 cut(s) | 306 |
| BspACI | CCGC | 4 cut(s) | 24, 137, 1521, 2201 |
| BspANI | GGCC | 7 cut(s) | 37, 296, 311, 595, 1659, 2437, 2515 |
| BspCNI | CTCAG | 9 cut(s) | 211, 225, 445, 725, 946, 1366, 1588, 2326, 2458 |
| BspHI | TCATGA | 1 cut(s) | 394 |
| BspLI | GGNNCC | 9 cut(s) | 28, 280, 594, 718, 744, 930, 2447, 2597, 2707 |
| BspMAI | CTGCAG | 1 cut(s) | 646 |
| BspMI | ACCTGC | 2 cut(s) | 1786, 1990 |
| BspPI | GGATC | 6 cut(s) | 229, 250, 273, 286, 983, 1457 |
| BspQI | GCTCTTC | 2 cut(s) | 1264, 1606 |
| BspT107I | GGYRCC | 4 cut(s) | 26, 742, 2445, 2705 |
| BspTNI | GGTCTC | 1 cut(s) | 2266 |
| BsrDI | GCAATG | 1 cut(s) | 1062 |
| BsrFI | RCCGGY | 1 cut(s) | 29 |
| BsrI | ACTGG | 6 cut(s) | 417, 865, 992, 1416, 2060, 2636 |
| BssAI | RCCGGY | 1 cut(s) | 29 |
| BssECI | CCNNGG | 3 cut(s) | 291, 306, 1590 |
| BssT1I | CCWWGG | 1 cut(s) | 306 |
| Bst2UI | CCWGG | 7 cut(s) | 369, 740, 1196, 1278, 1592, 1656, 1722 |
| Bst4CI | ACNGT | 7 cut(s) | 446, 655, 801, 822, 1465, 2156, 2614 |
| Bst6I | CTCTTC | 5 cut(s) | 165, 1264, 1319, 1606, 1758 |
| BstC8I | GCNNGC | 3 cut(s) | 126, 1059, 1389 |
| BstDSI | CCRYGG | 1 cut(s) | 306 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1373 |
| BstMAI | GTCTC | 2 cut(s) | 45, 2266 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 125, 134, 302, 671, 1205, 1665, 1976 |
| BstNI | CCWGG | 7 cut(s) | 369, 740, 1196, 1278, 1592, 1656, 1722 |
| BstNSI | RCATGY | 1 cut(s) | 1760 |
| BstSCI | CCNGG | 7 cut(s) | 367, 738, 1194, 1276, 1590, 1654, 1720 |
| BstSFI | CTRYAG | 4 cut(s) | 153, 642, 679, 2440 |
| BstV1I | GCAGC | 3 cut(s) | 145, 656, 1186 |
| BstX2I | RGATCY | 4 cut(s) | 221, 242, 278, 988 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 655, 999 |
| BstYI | RGATCY | 4 cut(s) | 221, 242, 278, 988 |
| BsuRI | GGCC | 7 cut(s) | 37, 296, 311, 595, 1659, 2437, 2515 |
| BtgI | CCRYGG | 1 cut(s) | 306 |
| BtgZI | GCGATG | 1 cut(s) | 134 |
| BtsI | GCAGTG | 2 cut(s) | 639, 749 |
| BtsIMutI | CAGTG | 9 cut(s) | 230, 424, 442, 639, 749, 1631, 2161, 2295, 2643 |
| BveI | ACCTGC | 2 cut(s) | 1786, 1990 |
| Cac8I | GCNNGC | 3 cut(s) | 126, 1059, 1389 |
| CciI | TCATGA | 1 cut(s) | 394 |
| Cfr10I | RCCGGY | 1 cut(s) | 29 |
| Cfr13I | GGNCC | 8 cut(s) | 35, 593, 620, 716, 928, 1724, 2436, 2595 |
| CsiI | ACCWGGT | 1 cut(s) | 1276 |
| Csp6I | GTAC | 8 cut(s) | 802, 823, 1517, 2264, 2446, 2568, 2626, 2706 |
| CspAI | ACCGGT | 1 cut(s) | 29 |
| CspCI | CAANNNNNGTGG | 5 cut(s) | 36, 219, 254, 2619, 2654 |
| CviQI | GTAC | 8 cut(s) | 802, 823, 1517, 2264, 2446, 2568, 2626, 2706 |
| EaeI | YGGCCR | 1 cut(s) | 309 |
| Eam1104I | CTCTTC | 5 cut(s) | 165, 1264, 1319, 1606, 1758 |
| EarI | CTCTTC | 5 cut(s) | 165, 1264, 1319, 1606, 1758 |
| Ecl136II | GAGCTC | 1 cut(s) | 1541 |
| Eco130I | CCWWGG | 1 cut(s) | 306 |
| Eco24I | GRGCYC | 1 cut(s) | 1543 |
| Eco31I | GGTCTC | 1 cut(s) | 2266 |
| Eco47I | GGWCC | 5 cut(s) | 620, 716, 928, 1724, 2595 |
| Eco53kI | GAGCTC | 1 cut(s) | 1541 |
| Eco57I | CTGAAG | 2 cut(s) | 1065, 2319 |
| Eco88I | CYCGRG | 1 cut(s) | 273 |
| EcoICRI | GAGCTC | 1 cut(s) | 1541 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1373 |
| EcoO109I | RGGNCCY | 3 cut(s) | 716, 2436, 2595 |
| EcoRII | CCWGG | 7 cut(s) | 367, 738, 1194, 1276, 1590, 1654, 1720 |
| EcoT14I | CCWWGG | 1 cut(s) | 306 |
| EcoT22I | ATGCAT | 1 cut(s) | 1077 |
| EcoT38I | GRGCYC | 1 cut(s) | 1543 |
| ErhI | CCWWGG | 1 cut(s) | 306 |
| Esp3I | CGTCTC | 1 cut(s) | 45 |
| FaqI | GGGAC | 3 cut(s) | 702, 1201, 2581 |
| FauI | CCCGC | 2 cut(s) | 130, 1528 |
| FbaI | TGATCA | 1 cut(s) | 391 |
| Fnu4HI | GCNGC | 5 cut(s) | 25, 159, 645, 1200, 2202 |
| FriOI | GRGCYC | 1 cut(s) | 1543 |
| Fsp4HI | GCNGC | 5 cut(s) | 25, 159, 645, 1200, 2202 |
| FspBI | CTAG | 9 cut(s) | 146, 468, 498, 539, 1209, 1503, 1971, 2261, 2379 |
| GluI | GCNGC | 5 cut(s) | 25, 159, 645, 1200, 2202 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeIII | GGCC | 7 cut(s) | 37, 296, 311, 595, 1659, 2437, 2515 |
| HapII | CCGG | 2 cut(s) | 30, 51 |
| HindIII | AAGCTT | 1 cut(s) | 1055 |
| HinfI | GANTC | 5 cut(s) | 141, 149, 439, 793, 2756 |
| HpaII | CCGG | 2 cut(s) | 30, 51 |
| HphI | GGTGA | 7 cut(s) | 16, 65, 401, 882, 2517, 2529, 2743 |
| Hpy166II | GTNNAC | 7 cut(s) | 88, 204, 427, 804, 825, 1175, 1517 |
| Hpy188I | TCNGA | 7 cut(s) | 435, 905, 1096, 1356, 1822, 2316, 2755 |
| Hpy188III | TCNNGA | 7 cut(s) | 167, 395, 1266, 1604, 2131, 2458, 2718 |
| Hpy8I | GTNNAC | 7 cut(s) | 88, 204, 427, 804, 825, 1175, 1517 |
| HpyAV | CCTTC | 8 cut(s) | 173, 329, 745, 1040, 1137, 1467, 1831, 1921 |
| HpyCH4III | ACNGT | 7 cut(s) | 446, 655, 801, 822, 1465, 2156, 2614 |
| HpyCH4IV | ACGT | 1 cut(s) | 479 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 125, 134, 302, 671, 1205, 1665, 1976 |
| HpySE526I | ACGT | 1 cut(s) | 479 |
| KpnI | GGTACC | 2 cut(s) | 2449, 2709 |
| Ksp22I | TGATCA | 1 cut(s) | 391 |
| LguI | GCTCTTC | 2 cut(s) | 1264, 1606 |
| LmnI | GCTCC | 6 cut(s) | 232, 1437, 1538, 1546, 1807, 1883 |
| Lsp1109I | GCAGC | 3 cut(s) | 145, 656, 1186 |
| LweI | GCATC | 9 cut(s) | 111, 137, 263, 544, 1084, 1100, 1149, 1974, 2133 |
| MabI | ACCWGGT | 1 cut(s) | 1276 |
| MaeI | CTAG | 9 cut(s) | 146, 468, 498, 539, 1209, 1503, 1971, 2261, 2379 |
| MaeII | ACGT | 1 cut(s) | 479 |
| MaeIII | GTNAC | 7 cut(s) | 446, 1418, 1465, 1637, 1716, 2013, 2523 |
| MfeI | CAATTG | 1 cut(s) | 2267 |
| MflI | RGATCY | 4 cut(s) | 221, 242, 278, 988 |
| MhlI | GDGCHC | 4 cut(s) | 1276, 1543, 1618, 2386 |
| MlsI | TGGCCA | 1 cut(s) | 311 |
| MluNI | TGGCCA | 1 cut(s) | 311 |
| MlyI | GAGTC | 1 cut(s) | 2750 |
| MmeI | TCCRAC | 2 cut(s) | 928, 2475 |
| Mox20I | TGGCCA | 1 cut(s) | 311 |
| Mph1103I | ATGCAT | 1 cut(s) | 1077 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1647, 2256 |
| MscI | TGGCCA | 1 cut(s) | 311 |
| MseI | TTAA | 8 cut(s) | 522, 1734, 1848, 1917, 1947, 2099, 2553, 2696 |
| MslI | CAYNNNNRTG | 5 cut(s) | 93, 653, 681, 2141, 2429 |
| Msp20I | TGGCCA | 1 cut(s) | 311 |
| MspA1I | CMGCKG | 2 cut(s) | 925, 2042 |
| MspI | CCGG | 2 cut(s) | 30, 51 |
| MspR9I | CCNGG | 7 cut(s) | 369, 740, 1196, 1278, 1592, 1656, 1722 |
| MunI | CAATTG | 1 cut(s) | 2267 |
| MvaI | CCWGG | 7 cut(s) | 369, 740, 1196, 1278, 1592, 1656, 1722 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 125, 134, 302, 671, 1205, 1665, 1976 |
| NcoI | CCATGG | 1 cut(s) | 306 |
| NlaIV | GGNNCC | 9 cut(s) | 28, 280, 594, 718, 744, 930, 2447, 2597, 2707 |
| NmeAIII | GCCGAG | 1 cut(s) | 272 |
| NmuCI | GTSAC | 5 cut(s) | 446, 1418, 1465, 1637, 2523 |
| NsiI | ATGCAT | 1 cut(s) | 1077 |
| NspI | RCATGY | 1 cut(s) | 1760 |
| OliI | CACNNNNGTG | 2 cut(s) | 653, 681 |
| PaeR7I | CTCGAG | 1 cut(s) | 273 |
| PagI | TCATGA | 1 cut(s) | 394 |
| PciI | ACATGT | 1 cut(s) | 1756 |
| PciSI | GCTCTTC | 2 cut(s) | 1264, 1606 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1647, 2256 |
| PfeI | GAWTC | 4 cut(s) | 141, 149, 439, 793 |
| PinAI | ACCGGT | 1 cut(s) | 29 |
| PkrI | GCNGC | 5 cut(s) | 26, 160, 646, 1201, 2203 |
| PleI | GAGTC | 1 cut(s) | 2750 |
| PpsI | GAGTC | 1 cut(s) | 2750 |
| PpuMI | RGGWCCY | 2 cut(s) | 716, 2595 |
| PscI | ACATGT | 1 cut(s) | 1756 |
| Psp124BI | GAGCTC | 1 cut(s) | 1543 |
| Psp5II | RGGWCCY | 2 cut(s) | 716, 2595 |
| Psp6I | CCWGG | 7 cut(s) | 367, 738, 1194, 1276, 1590, 1654, 1720 |
| PspGI | CCWGG | 7 cut(s) | 367, 738, 1194, 1276, 1590, 1654, 1720 |
| PspN4I | GGNNCC | 9 cut(s) | 28, 280, 594, 718, 744, 930, 2447, 2597, 2707 |
| PspPI | GGNCC | 8 cut(s) | 35, 593, 620, 716, 928, 1724, 2436, 2595 |
| PspPPI | RGGWCCY | 2 cut(s) | 716, 2595 |
| PspXI | VCTCGAGB | 1 cut(s) | 273 |
| PstI | CTGCAG | 1 cut(s) | 646 |
| PsuI | RGATCY | 4 cut(s) | 221, 242, 278, 988 |
| PvuII | CAGCTG | 2 cut(s) | 925, 2042 |
| RsaI | GTAC | 8 cut(s) | 803, 824, 1518, 2265, 2447, 2569, 2627, 2707 |
| RsaNI | GTAC | 8 cut(s) | 802, 823, 1517, 2264, 2446, 2568, 2626, 2706 |
| RseI | CAYNNNNRTG | 5 cut(s) | 93, 653, 681, 2141, 2429 |
| SacI | GAGCTC | 1 cut(s) | 1543 |
| SapI | GCTCTTC | 2 cut(s) | 1264, 1606 |
| SaqAI | TTAA | 8 cut(s) | 522, 1734, 1848, 1917, 1947, 2099, 2553, 2696 |
| SatI | GCNGC | 5 cut(s) | 25, 159, 645, 1200, 2202 |
| Sau96I | GGNCC | 8 cut(s) | 35, 593, 620, 716, 928, 1724, 2436, 2595 |
| SchI | GAGTC | 1 cut(s) | 2750 |
| ScrFI | CCNGG | 7 cut(s) | 369, 740, 1196, 1278, 1592, 1656, 1722 |
| SduI | GDGCHC | 4 cut(s) | 1276, 1543, 1618, 2386 |
| SexAI | ACCWGGT | 1 cut(s) | 1276 |
| SfaNI | GCATC | 9 cut(s) | 111, 137, 263, 544, 1084, 1100, 1149, 1974, 2133 |
| SfcI | CTRYAG | 4 cut(s) | 153, 642, 679, 2440 |
| Sfr274I | CTCGAG | 1 cut(s) | 273 |
| SgrAI | CRCCGGYG | 1 cut(s) | 29 |
| SinI | GGWCC | 5 cut(s) | 620, 716, 928, 1724, 2595 |
| SlaI | CTCGAG | 1 cut(s) | 273 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 93, 653, 681, 2141, 2429 |
| SmlI | CTYRAG | 2 cut(s) | 11, 273 |
| SmoI | CTYRAG | 2 cut(s) | 11, 273 |
| SsiI | CCGC | 4 cut(s) | 24, 137, 1521, 2201 |
| SspI | AATATT | 1 cut(s) | 1647 |
| SspMI | CTAG | 9 cut(s) | 146, 468, 498, 539, 1209, 1503, 1971, 2261, 2379 |
| SstI | GAGCTC | 1 cut(s) | 1543 |
| StyD4I | CCNGG | 7 cut(s) | 367, 738, 1194, 1276, 1590, 1654, 1720 |
| StyI | CCWWGG | 1 cut(s) | 306 |
| TaaI | ACNGT | 7 cut(s) | 446, 655, 801, 822, 1465, 2156, 2614 |
| TaiI | ACGT | 1 cut(s) | 482 |
| TaqI | TCGA | 7 cut(s) | 114, 166, 274, 317, 1026, 1188, 1651 |
| TatI | WGTACW | 2 cut(s) | 801, 2263 |
| TauI | GCSGC | 2 cut(s) | 27, 2204 |
| TfiI | GAWTC | 4 cut(s) | 141, 149, 439, 793 |
| Tru1I | TTAA | 8 cut(s) | 522, 1734, 1848, 1917, 1947, 2099, 2553, 2696 |
| Tru9I | TTAA | 8 cut(s) | 522, 1734, 1848, 1917, 1947, 2099, 2553, 2696 |
| TscAI | CASTG | 9 cut(s) | 237, 424, 449, 646, 756, 1631, 2161, 2302, 2643 |
| TseFI | GTSAC | 5 cut(s) | 446, 1418, 1465, 1637, 2523 |
| TseI | GCWGC | 3 cut(s) | 158, 644, 1199 |
| Tsp45I | GTSAC | 5 cut(s) | 446, 1418, 1465, 1637, 2523 |
| TspGWI | ACGGA | 1 cut(s) | 1097 |
| TspRI | CASTG | 9 cut(s) | 237, 424, 449, 646, 756, 1631, 2161, 2302, 2643 |
| VpaK11BI | GGWCC | 5 cut(s) | 620, 716, 928, 1724, 2595 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1373 |
| XapI | RAATTY | 6 cut(s) | 71, 382, 729, 965, 1121, 2602 |
| XceI | RCATGY | 1 cut(s) | 1760 |
| XhoI | CTCGAG | 1 cut(s) | 273 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1647, 2256 |
| XspI | CTAG | 9 cut(s) | 146, 468, 498, 539, 1209, 1503, 1971, 2261, 2379 |
| Zsp2I | ATGCAT | 1 cut(s) | 1077 |