RLG00000010238

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000756
Physical Location & Seq
Forward (+)
64577825 .. 64578421
597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010238

Sequence Viewer

Length: 435 bp
ATGAAGCAAATGAGGCTCGAGTTTAGTGTGTTTAGTGGAGGAGACCCTGTTGAGTGGCTCAACAAAGCTGACCAGTACTTTGAATTTTATCAAATTCCAGAAGACAGGAAACTGTTTATAGCCACCATGCATCTATTAGATAAAGCTTCTGACATATGGTACATGTTTAGGCATGAATTTCTAAACTCTTGGCAAGGTTTGGCTGACTTGTTGATGAGGGAATTTAGTGGCTACAACAGGTCTGAGTATCAAGCTGCATTAGCCAGAATGAACCAAGCAGGCATTGTGGAGAGTTACAAGGAACAGTTCACAAAACTCTCTAGAAGGGCCCCAGGGTTCCCACCTGAAGTCTTACTCTCTTGTTTCATTGAAGGTTTGAAGGAGGTGATAAGGTGTGCAAACCCAGAAACTAAGAACCTTGCACGAAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

145

Amino Acids

16.9

Weight (kDa)

6.14

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 40 - 128 1.2e-10 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 83, 93, 176, 221
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 2 cut(s) 77, 161
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 3 cut(s) 83, 371, 379
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 4 cut(s) 68, 146, 254, 429
AluI AGCT 4 cut(s) 68, 146, 254, 429
Alw26I GTCTC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 1 cut(s) 327
ApaI GGGCCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 4 cut(s) 83, 93, 176, 221
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AspS9I GGNCC 2 cut(s) 327, 328
AsuHPI GGTGA 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 333
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 327, 328
BmiI GGNNCC 3 cut(s) 329, 330, 338
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 331, 332
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bse1I ACTGG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 331, 332
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 36
BsnI GGCC 1 cut(s) 329
Bso31I GGTCTC 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 17
Bsp120I GGGCCC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 331
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 329, 330, 338
BspTNI GGTCTC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 331, 332
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 114, 306
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 243, 411
BstMAI GTCTC 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 13, 260
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 329
Cac8I GCNNGC 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 327, 328
Csp6I GTAC 2 cut(s) 76, 160
CviAII CATG 3 cut(s) 127, 163, 173
CviQI GTAC 2 cut(s) 76, 160
DdeI CTNAG 2 cut(s) 243, 411
Eco24I GRGCYC 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 17
EcoO109I RGGNCCY 2 cut(s) 327, 328
EcoRII CCWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 331
FaeI CATG 3 cut(s) 130, 166, 176
FaiI YATR 6 cut(s) 119, 128, 155, 157, 164, 174
FatI CATG 3 cut(s) 126, 162, 172
FauNDI CATATG 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 329
Hin1II CATG 3 cut(s) 130, 166, 176
HindIII AAGCTT 2 cut(s) 144, 427
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 2 cut(s) 151, 244
Hpy188III TCNNGA 2 cut(s) 98, 321
Hpy8I GTNNAC 1 cut(s) 309
HpyAV CCTTC 3 cut(s) 318, 365, 373
HpyCH4III ACNGT 2 cut(s) 114, 306
HpyCH4V TGCA 4 cut(s) 130, 257, 398, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 260
HpyF3I CTNAG 2 cut(s) 243, 411
Hsp92II CATG 3 cut(s) 130, 166, 176
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 293
MboII GAAGA 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 4 cut(s) 83, 93, 176, 221
MnlI CCTC 4 cut(s) 6, 32, 210, 376
Mph1103I ATGCAT 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 13, 260
NdeI CATATG 1 cut(s) 155
NlaIII CATG 3 cut(s) 130, 166, 176
NlaIV GGNNCC 3 cut(s) 329, 330, 338
NsiI ATGCAT 1 cut(s) 132
NspI RCATGY 1 cut(s) 166
PaeR7I CTCGAG 1 cut(s) 17
PasI CCCWGGG 1 cut(s) 332
PciI ACATGT 1 cut(s) 162
PkrI GCNGC 1 cut(s) 256
PscI ACATGT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 3 cut(s) 329, 330, 338
PspOMI GGGCCC 1 cut(s) 327
PspPI GGNCC 2 cut(s) 327, 328
PspXI VCTCGAGB 1 cut(s) 17
RsaI GTAC 2 cut(s) 77, 161
RsaNI GTAC 2 cut(s) 76, 160
SatI GCNGC 1 cut(s) 255
Sau96I GGNCC 2 cut(s) 327, 328
ScaI AGTACT 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 331
SfaNI GCATC 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 4 cut(s) 83, 93, 176, 221
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 114, 306
TaqI TCGA 1 cut(s) 18
TasI AATT 4 cut(s) 83, 93, 176, 221
TatI WGTACW 1 cut(s) 75
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 17, 189, 284, 355
XapI RAATTY 4 cut(s) 83, 93, 176, 221
XbaI TCTAGA 1 cut(s) 320
XceI RCATGY 1 cut(s) 166
XhoI CTCGAG 1 cut(s) 17
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.