RchiOBHm_Chr3g0473251

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000756
Physical Location & Seq
Forward (+)
19159218 .. 19161659
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43893

Sequence Viewer

Length: 1926 bp
ATGCTCAAGAAAGATAGCTTTCAATGGAGTCCAGAAGCGGTCACAGCATTTGAGAGTTTAAAACAAGCTCTAACTTCCACACCCGTGCTAGCTATACCTGATTTTTCAAAGGAGTTCGTGATTGAGTGTGATGCATCGGATTGGGGAATTGGAGCAGTATTATCCCAAGAGGGACACCCCGTGGCTTACATGATTAAGGCTTTGGCACAAAGACATCTTGCCTTATCAGTGTATGATAAGGAGATGCTGGCAGCAGTATCCGCTGTCCAACATTGGAGGCCATATCTGTTAGGTCACCATTTCAAAATATACACAGACCATAAAACCATTGAGCATTTTTTGGGCCAAAGAATCACCACTCCTGCGCAGCAGAAATGGCTACTCAAACTTATGGGATATGACTATTCCATCCTATACAAGGCTGGGAAGAATAATGCGGCTCCTGATGCGCTGTCTAGAGAGGGCATGTTAGCCACTTTGGGGGTGTCCACACCTGTTCATACCTATGTAGAGGAAATTCAAAAAGCTTGCAAGGCGGATCCCACAACATCCGAGATTATACAGTTGCAGTCTGACCTTAATAGTTGCAAGCACTATACCATGCTGAACTCTCAACTCCTCTATAAAGGTAAAGTTTTTGTTCCTAATTCGGGTGGTTGGAGGCAAAGGGTGATGGCTGAATTCCATGATGGCCTTAGTGGGGGTCATGCAGGCAGCTCAAGAACTTATGAAAGGTTAAAAAAGAACTTTGCTTGGTCAGGAATACAAAAGGATGTGAAGAGATTTGTTGCAGCTTGTGAGGTTTGTCAACGAAATCATTATGAGACGCGCCTACCTCCCGGCTTATTGCAGCCTTTAGCTATACCAGACAAGGCTTGGAGTGTCCTATCCATGGATTTTATAGAAGGGCTGCCTAAGTCAGATGGTAACTCAGTCATTTGGGTAGTCATTGATAAACTCACAAAGTTTGCCCATTTCATTCCATTAAAGCACCCATTCACAGTTGCCACCCTCGCTCAAGTGTTTGTCCAGGAAGTCTTTAGATTACATGGTATGCCAGAAGCCATCATTTCTGACAGAGATCCCATTTTTTTGAGCTTATTTTGGGAGGCCTTCTTCAATCTGCAGGGTACCAAGCTTAGAAAATCTTCTGCCTACCATCCCCAGACGGATGGGCAAACTGAAAATTTGAATAGAACCTTGGAACAATATCTGCGTTGTGTTGCAGGTGACAAGCCACACACTTGGGTGCAGGCACTTCCCTGGGCAGAGTGGTGGTACAATACCGCTCACCATGCCTCCCTCAAAATGACTCCCTTCAAGGCTTTGTATGGCTATGATCCACCCATGGTCACACCCTACATTTCTGGTTCAACTTCAGTGGCTGAAGTGGATGCTCAATTAAAAGAAAGAGATGAGATGTTGGCCACCATCAAGAGAAACCTCCTGCAAGCTCAAAGTAGAATGAAAGGCTACTATGATAAGAAACATACAGAGAGAGAATTCCAGGTGGGAGATTGGGTTTATCTCAAGCTGCAGCCGTATAGACAACAATCTGTCAATGGTAATGCCTTTCATAAACTGGCGGCCAAGTACTATGGCCCTTTTCAAATCATTGCACGAATAGGAACAGTGGCCTACAAATTACAGCTACCAGATTCAGCCAAAATCCATAATGTCTTTCACGTATCTTTGCTTAAGAAGAAAGTGGGCACTTCAGTACTTGTTGAGCCTCATCTTCCCAATGTGAAGGATATTTCGATTGTGCGGTGGACTCCTGAGAAAGTTCTACAAACTAGAATGGTGAAACGCAAGGGAGAAGCAGCAACCCAGTGGCTTATTCATTGGTTGGGCACTTCACCTGATGAGGCCACCTGGGAATTCGCTCATGAGATTCTGCAAAGGTACCCCAATTTCCAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

641

Amino Acids

73.11

Weight (kDa)

9.12

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 9 - 103 2.3e-30 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 34 - 133 8.1e-30 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 221 - 273 4.1e-18 Integrase zinc binding domain
SH3_Tf2-1 PF24626 505 - 569 5.8e-23 Tf2-1-like, SH3 domain
Integrase_p58_C PF22938 534 - 568 4.2e-06 Integrase p58, C-terminal domain
Chromo PF00385 591 - 636 4.8e-06 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1217
Acc16I TGCGCA 1 cut(s) 366
Acc36I ACCTGC 1 cut(s) 1217
Acc65I GGTACC 2 cut(s) 1130, 1905
AccB1I GGYRCC 2 cut(s) 1130, 1905
AccBSI CCGCTC 1 cut(s) 1289
AccII CGCG 1 cut(s) 829
AciI CCGC 7 cut(s) 38, 261, 437, 536, 1287, 1586, 1768
AclWI GGATC 4 cut(s) 533, 546, 1076, 1334
AcoI YGGCCR 2 cut(s) 1425, 1587
AcsI RAATTY 5 cut(s) 516, 680, 1186, 1502, 1880
AcuI CTGAAG 3 cut(s) 1362, 1407, 1701
AdeI CACNNNGTG 1 cut(s) 181
AfaI GTAC 5 cut(s) 1132, 1280, 1595, 1722, 1907
AfiI CCNNNNNNNGG 5 cut(s) 418, 480, 650, 700, 892
AflII CTTAAG 1 cut(s) 1697
AgsI TTSAA 9 cut(s) 23, 108, 304, 521, 1120, 1192, 1321, 1374, 1610
AjnI CCWGG 4 cut(s) 1029, 1262, 1506, 1874
AjuI GAANNNNNNNTTGG 2 cut(s) 1184, 1216
AleI CACNNNNGTG 2 cut(s) 83, 1247
Alw26I GTCTC 1 cut(s) 818
AlwI GGATC 4 cut(s) 533, 546, 1076, 1334
AlwNI CAGNNNCTG 1 cut(s) 1385
AoxI GGCC 9 cut(s) 278, 343, 691, 1110, 1425, 1587, 1600, 1635, 1869
ApeKI GCWGC 9 cut(s) 251, 367, 714, 791, 850, 910, 1534, 1537, 1823
ApoI RAATTY 5 cut(s) 516, 680, 1186, 1502, 1880
Asp700I GAANNNNTTC 1 cut(s) 1147
Asp718I GGTACC 2 cut(s) 1130, 1905
AspLEI GCGC 3 cut(s) 367, 451, 831
AspS9I GGNCC 2 cut(s) 343, 1601
AsuC2I CCSGG 1 cut(s) 840
AsuHPI GGTGA 7 cut(s) 287, 346, 682, 1241, 1283, 1816, 1851
AsuNHI GCTAGC 1 cut(s) 88
BaeGI GKGCMC 2 cut(s) 1715, 1856
BalI TGGCCA 1 cut(s) 1427
BamHI GGATCC 1 cut(s) 538
BanI GGYRCC 2 cut(s) 1130, 1905
BbvI GCAGC 9 cut(s) 263, 379, 726, 803, 862, 897, 1521, 1549, 1835
BccI CCATC 8 cut(s) 416, 667, 683, 917, 1073, 1166, 1167, 1439
BceAI ACGGC 1 cut(s) 1525
BciT130I CCWGG 4 cut(s) 1031, 1264, 1508, 1876
BciVI GTATCC 1 cut(s) 268
BcnI CCSGG 1 cut(s) 840
BcoDI GTCTC 1 cut(s) 818
BfaI CTAG 3 cut(s) 89, 456, 1797
BfmI CTRYAG 2 cut(s) 1124, 1535
BfrI CTTAAG 1 cut(s) 1697
BfuAI ACCTGC 1 cut(s) 1217
BfuI GTATCC 1 cut(s) 268
BmcAI AGTACT 2 cut(s) 1595, 1722
Bme1390I CCNGG 5 cut(s) 840, 1031, 1264, 1508, 1876
BmgT120I GGNCC 2 cut(s) 343, 1601
BmiI GGNNCC 4 cut(s) 441, 540, 1132, 1907
BmrFI CCNGG 5 cut(s) 840, 1031, 1264, 1508, 1876
BmrI ACTGGG 1 cut(s) 1825
BmsI GCATC 5 cut(s) 121, 143, 234, 436, 1384
BmtI GCTAGC 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 1825
BpuEI CTTGAG 3 cut(s) 703, 1002, 1514
BpuMI CCSGG 1 cut(s) 840
BsaAI YACGTR 1 cut(s) 1687
BsaJI CCNNGG 7 cut(s) 180, 891, 1200, 1262, 1263, 1347, 1875
BsaXI ACNNNNNCTCC 4 cut(s) 1283, 1313, 1506, 1536
Bsc4I CCNNNNNNNGG 5 cut(s) 418, 480, 650, 700, 892
Bse1I ACTGG 2 cut(s) 1587, 1831
Bse3DI GCAATG 1 cut(s) 1614
BseBI CCWGG 4 cut(s) 1031, 1264, 1508, 1876
BseDI CCNNGG 7 cut(s) 180, 891, 1200, 1262, 1263, 1347, 1875
BseGI GGATG 6 cut(s) 408, 548, 778, 1159, 1177, 1399
BseLI CCNNNNNNNGG 5 cut(s) 418, 480, 650, 700, 892
BseMI GCAATG 1 cut(s) 1614
BseMII CTCAG 2 cut(s) 945, 1770
BseNI ACTGG 2 cut(s) 1587, 1831
BseRI GAGGAG 1 cut(s) 608
BseSI GKGCMC 2 cut(s) 1715, 1856
BseXI GCAGC 9 cut(s) 263, 379, 726, 803, 862, 897, 1521, 1549, 1835
BseYI CCCAGC 1 cut(s) 422
BsgI GTGCAG 1 cut(s) 1271
Bsh1236I CGCG 1 cut(s) 829
BshFI GGCC 9 cut(s) 280, 345, 693, 1112, 1427, 1589, 1602, 1637, 1871
BshNI GGYRCC 2 cut(s) 1130, 1905
BsiSI CCGG 1 cut(s) 840
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 5 cut(s) 418, 480, 650, 700, 892
BsmAI GTCTC 1 cut(s) 818
BsmBI CGTCTC 1 cut(s) 818
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 9 cut(s) 280, 345, 693, 1112, 1427, 1589, 1602, 1637, 1871
Bsp1286I GDGCHC 2 cut(s) 1715, 1856
Bsp143I GATC 3 cut(s) 538, 1081, 1339
Bsp19I CCATGG 2 cut(s) 891, 1347
BspACI CCGC 7 cut(s) 38, 261, 437, 536, 1287, 1586, 1768
BspANI GGCC 9 cut(s) 280, 345, 693, 1112, 1427, 1589, 1602, 1637, 1871
BspCNI CTCAG 2 cut(s) 944, 1771
BspFNI CGCG 1 cut(s) 829
BspHI TCATGA 1 cut(s) 1888
BspLI GGNNCC 4 cut(s) 441, 540, 1132, 1907
BspMAI CTGCAG 2 cut(s) 1128, 1539
BspMI ACCTGC 1 cut(s) 1217
BspOI GCTAGC 1 cut(s) 92
BspPI GGATC 4 cut(s) 533, 546, 1076, 1334
BspT107I GGYRCC 2 cut(s) 1130, 1905
BspTI CTTAAG 1 cut(s) 1697
BsrBI CCGCTC 1 cut(s) 1289
BsrDI GCAATG 1 cut(s) 1614
BsrI ACTGG 2 cut(s) 1587, 1831
BssECI CCNNGG 7 cut(s) 180, 891, 1200, 1262, 1263, 1347, 1875
BssMI GATC 3 cut(s) 538, 1081, 1339
BssT1I CCWWGG 3 cut(s) 891, 1200, 1347
Bst2UI CCWGG 4 cut(s) 1031, 1264, 1508, 1876
Bst4CI ACNGT 3 cut(s) 564, 1003, 1633
Bst6I CTCTTC 1 cut(s) 773
BstAFI CTTAAG 1 cut(s) 1697
BstBAI YACGTR 1 cut(s) 1687
BstC8I GCNNGC 7 cut(s) 90, 249, 529, 590, 712, 1254, 1452
BstDEI CTNAG 5 cut(s) 695, 915, 931, 1139, 1779
BstDSI CCRYGG 3 cut(s) 180, 891, 1347
BstEII GGTNACC 1 cut(s) 293
BstENI CCTNNNNNAGG 1 cut(s) 416
BstF5I GGATG 6 cut(s) 408, 548, 778, 1159, 1177, 1399
BstFNI CGCG 1 cut(s) 829
BstHHI GCGC 3 cut(s) 367, 451, 831
BstKTI GATC 3 cut(s) 541, 1084, 1342
BstMAI GTCTC 1 cut(s) 818
BstMBI GATC 3 cut(s) 538, 1081, 1339
BstMWI GCNNNNNNNGC 7 cut(s) 44, 260, 376, 446, 533, 1013, 1295
BstNI CCWGG 4 cut(s) 1031, 1264, 1508, 1876
BstNSI RCATGY 1 cut(s) 469
BstPI GGTNACC 1 cut(s) 293
BstSCI CCNGG 5 cut(s) 838, 1029, 1262, 1506, 1874
BstSFI CTRYAG 2 cut(s) 1124, 1535
BstSLI GKGCMC 2 cut(s) 1715, 1856
BstUI CGCG 1 cut(s) 829
BstV1I GCAGC 9 cut(s) 263, 379, 726, 803, 862, 897, 1521, 1549, 1835
BstX2I RGATCY 2 cut(s) 538, 1081
BstXI CCANNNNNNTGG 2 cut(s) 1172, 1245
BstYI RGATCY 2 cut(s) 538, 1081
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 9 cut(s) 280, 345, 693, 1112, 1427, 1589, 1602, 1637, 1871
BtgI CCRYGG 3 cut(s) 180, 891, 1347
BtsCI GGATG 6 cut(s) 408, 548, 778, 1159, 1177, 1399
BtsIMutI CAGTG 4 cut(s) 234, 1386, 1638, 1838
BveI ACCTGC 1 cut(s) 1217
Cac8I GCNNGC 7 cut(s) 90, 249, 529, 590, 712, 1254, 1452
CaiI CAGNNNCTG 1 cut(s) 1385
CciI TCATGA 1 cut(s) 1888
CfoI GCGC 3 cut(s) 367, 451, 831
Cfr13I GGNCC 2 cut(s) 343, 1601
CseI GACGC 1 cut(s) 835
Csp6I GTAC 5 cut(s) 1131, 1279, 1594, 1721, 1906
CspCI CAANNNNNGTGG 2 cut(s) 1362, 1397
CviQI GTAC 5 cut(s) 1131, 1279, 1594, 1721, 1906
DdeI CTNAG 5 cut(s) 695, 915, 931, 1139, 1779
DpnI GATC 3 cut(s) 540, 1083, 1341
DpnII GATC 3 cut(s) 538, 1081, 1339
DraI TTTAAA 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 181
EaeI YGGCCR 2 cut(s) 1425, 1587
Eam1104I CTCTTC 1 cut(s) 773
EarI CTCTTC 1 cut(s) 773
EciI GGCGGA 1 cut(s) 551
Eco130I CCWWGG 3 cut(s) 891, 1200, 1347
Eco147I AGGCCT 1 cut(s) 1112
Eco57I CTGAAG 3 cut(s) 1362, 1407, 1701
Eco91I GGTNACC 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 293
EcoRI GAATTC 3 cut(s) 680, 1502, 1880
EcoRII CCWGG 4 cut(s) 1029, 1262, 1506, 1874
EcoT14I CCWWGG 3 cut(s) 891, 1200, 1347
EcoT22I ATGCAT 1 cut(s) 136
ErhI CCWWGG 3 cut(s) 891, 1200, 1347
Esp3I CGTCTC 1 cut(s) 818
FaqI GGGAC 1 cut(s) 186
FokI GGATG 6 cut(s) 395, 535, 785, 1146, 1184, 1406
FspBI CTAG 3 cut(s) 89, 456, 1797
FspI TGCGCA 1 cut(s) 366
GlaI GCGC 3 cut(s) 366, 450, 830
GsaI CCCAGC 1 cut(s) 426
HaeIII GGCC 9 cut(s) 280, 345, 693, 1112, 1427, 1589, 1602, 1637, 1871
HapII CCGG 1 cut(s) 840
HgaI GACGC 1 cut(s) 835
HhaI GCGC 3 cut(s) 367, 451, 831
Hin6I GCGC 3 cut(s) 365, 449, 829
HinP1I GCGC 3 cut(s) 365, 449, 829
HincII GTYRAC 1 cut(s) 809
HindII GTYRAC 1 cut(s) 809
HindIII AAGCTT 2 cut(s) 525, 1136
HinfI GANTC 6 cut(s) 28, 351, 1312, 1658, 1774, 1894
HpaII CCGG 1 cut(s) 840
HphI GGTGA 7 cut(s) 287, 346, 682, 1241, 1283, 1816, 1851
Hpy166II GTNNAC 3 cut(s) 489, 809, 1773
Hpy188I TCNGA 5 cut(s) 139, 553, 574, 922, 1075
Hpy8I GTNNAC 3 cut(s) 489, 809, 1773
HpyAV CCTTC 4 cut(s) 899, 1123, 1327, 1744
HpyCH4III ACNGT 3 cut(s) 564, 1003, 1633
HpyCH4IV ACGT 1 cut(s) 1686
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 260, 376, 446, 533, 1013, 1295
HpyF3I CTNAG 5 cut(s) 695, 915, 931, 1139, 1779
HpySE526I ACGT 1 cut(s) 1686
HspAI GCGC 3 cut(s) 365, 449, 829
KpnI GGTACC 2 cut(s) 1134, 1909
Kzo9I GATC 3 cut(s) 538, 1081, 1339
LmnI GCTCC 2 cut(s) 152, 445
Lsp1109I GCAGC 9 cut(s) 263, 379, 726, 803, 862, 897, 1521, 1549, 1835
LweI GCATC 5 cut(s) 121, 143, 234, 436, 1384
MaeI CTAG 3 cut(s) 89, 456, 1797
MaeII ACGT 1 cut(s) 1686
MaeIII GTNAC 5 cut(s) 40, 293, 926, 1229, 1351
MalI GATC 3 cut(s) 540, 1083, 1341
MbiI CCGCTC 1 cut(s) 1289
MboI GATC 3 cut(s) 538, 1081, 1339
MboII GAAGA 6 cut(s) 439, 790, 1108, 1140, 1714, 1730
MflI RGATCY 2 cut(s) 538, 1081
MhlI GDGCHC 2 cut(s) 1715, 1856
MlsI TGGCCA 1 cut(s) 1427
MluNI TGGCCA 1 cut(s) 1427
MlyI GAGTC 3 cut(s) 37, 1306, 1768
MmeI TCCRAC 2 cut(s) 292, 638
Mox20I TGGCCA 1 cut(s) 1427
Mph1103I ATGCAT 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 1147
MscI TGGCCA 1 cut(s) 1427
MseI TTAA 7 cut(s) 59, 195, 579, 737, 986, 1403, 1698
MslI CAYNNNNRTG 3 cut(s) 83, 504, 1247
Msp20I TGGCCA 1 cut(s) 1427
MspA1I CMGCKG 1 cut(s) 263
MspCI CTTAAG 1 cut(s) 1697
MspI CCGG 1 cut(s) 840
MspR9I CCNGG 5 cut(s) 840, 1031, 1264, 1508, 1876
MvaI CCWGG 4 cut(s) 1031, 1264, 1508, 1876
MvnI CGCG 1 cut(s) 829
MwoI GCNNNNNNNGC 7 cut(s) 44, 260, 376, 446, 533, 1013, 1295
NciI CCSGG 1 cut(s) 840
NcoI CCATGG 2 cut(s) 891, 1347
NdeII GATC 3 cut(s) 538, 1081, 1339
NheI GCTAGC 1 cut(s) 88
NlaIV GGNNCC 4 cut(s) 441, 540, 1132, 1907
NmuCI GTSAC 4 cut(s) 40, 293, 1229, 1351
NsbI TGCGCA 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 1 cut(s) 469
OliI CACNNNNGTG 2 cut(s) 83, 1247
PagI TCATGA 1 cut(s) 1888
PaqCI CACCTGC 1 cut(s) 1217
PasI CCCWGGG 1 cut(s) 1263
PceI AGGCCT 1 cut(s) 1112
PdmI GAANNNNTTC 1 cut(s) 1147
PfeI GAWTC 3 cut(s) 351, 1658, 1894
PfoI TCCNGGA 1 cut(s) 1029
PleI GAGTC 3 cut(s) 36, 1306, 1768
PpsI GAGTC 3 cut(s) 36, 1306, 1768
Ppu21I YACGTR 1 cut(s) 1687
Psp6I CCWGG 4 cut(s) 1029, 1262, 1506, 1874
PspEI GGTNACC 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 422
PspGI CCWGG 4 cut(s) 1029, 1262, 1506, 1874
PspN4I GGNNCC 4 cut(s) 441, 540, 1132, 1907
PspPI GGNCC 2 cut(s) 343, 1601
PstI CTGCAG 2 cut(s) 1128, 1539
PstNI CAGNNNCTG 1 cut(s) 1385
PsuI RGATCY 2 cut(s) 538, 1081
RsaI GTAC 5 cut(s) 1132, 1280, 1595, 1722, 1907
RsaNI GTAC 5 cut(s) 1131, 1279, 1594, 1721, 1906
RseI CAYNNNNRTG 3 cut(s) 83, 504, 1247
SaqAI TTAA 7 cut(s) 59, 195, 579, 737, 986, 1403, 1698
Sau3AI GATC 3 cut(s) 538, 1081, 1339
Sau96I GGNCC 2 cut(s) 343, 1601
ScaI AGTACT 2 cut(s) 1595, 1722
SchI GAGTC 3 cut(s) 37, 1306, 1768
ScrFI CCNGG 5 cut(s) 840, 1031, 1264, 1508, 1876
SduI GDGCHC 2 cut(s) 1715, 1856
SfaNI GCATC 5 cut(s) 121, 143, 234, 436, 1384
SfcI CTRYAG 2 cut(s) 1124, 1535
SmiMI CAYNNNNRTG 3 cut(s) 83, 504, 1247
SmlI CTYRAG 5 cut(s) 5, 718, 1017, 1529, 1697
SmoI CTYRAG 5 cut(s) 5, 718, 1017, 1529, 1697
SseBI AGGCCT 1 cut(s) 1112
SsiI CCGC 7 cut(s) 38, 261, 437, 536, 1287, 1586, 1768
SspMI CTAG 3 cut(s) 89, 456, 1797
StuI AGGCCT 1 cut(s) 1112
StyD4I CCNGG 5 cut(s) 838, 1029, 1262, 1506, 1874
StyI CCWWGG 3 cut(s) 891, 1200, 1347
TaaI ACNGT 3 cut(s) 564, 1003, 1633
TaiI ACGT 1 cut(s) 1689
TaqI TCGA 1 cut(s) 1760
TatI WGTACW 2 cut(s) 1593, 1720
TauI GCSGC 2 cut(s) 440, 1589
TfiI GAWTC 3 cut(s) 351, 1658, 1894
Tru1I TTAA 7 cut(s) 59, 195, 579, 737, 986, 1403, 1698
Tru9I TTAA 7 cut(s) 59, 195, 579, 737, 986, 1403, 1698
TscAI CASTG 4 cut(s) 234, 1386, 1638, 1838
TseFI GTSAC 4 cut(s) 40, 293, 1229, 1351
TseI GCWGC 9 cut(s) 251, 367, 714, 791, 850, 910, 1534, 1537, 1823
Tsp45I GTSAC 4 cut(s) 40, 293, 1229, 1351
TspDTI ATGAA 6 cut(s) 488, 744, 967, 1481, 1565, 1832
TspGWI ACGGA 1 cut(s) 1184
TspRI CASTG 4 cut(s) 234, 1386, 1638, 1838
Vha464I CTTAAG 1 cut(s) 1697
XagI CCTNNNNNAGG 1 cut(s) 416
XapI RAATTY 5 cut(s) 516, 680, 1186, 1502, 1880
XbaI TCTAGA 1 cut(s) 455
XceI RCATGY 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 873
XmnI GAANNNNTTC 1 cut(s) 1147
XspI CTAG 3 cut(s) 89, 456, 1797
ZrmI AGTACT 2 cut(s) 1595, 1722
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.