transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ty3_capsid | PF19259 | 307 - 452 | 5.4e-10 | Ty3 transposon capsid-like protein |
| Retrotrans_gag | PF03732 | 320 - 408 | 7.8e-11 | Retrotransposon gag protein |
| gag-asp_proteas | PF13975 | 579 - 667 | 7.3e-07 | gag-polyprotein putative aspartyl protease |
| RVP_2 | PF08284 | 582 - 668 | 9.9e-08 | Retroviral aspartyl protease |
| RVT_1 | PF00078 | 817 - 887 | 1.6e-12 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 789, 1074 |
| Acc36I | ACCTGC | 1 cut(s) | 742 |
| Acc65I | GGTACC | 1 cut(s) | 1820 |
| AccB1I | GGYRCC | 2 cut(s) | 1420, 1820 |
| AciI | CCGC | 3 cut(s) | 20, 263, 1212 |
| AclWI | GGATC | 3 cut(s) | 533, 878, 2822 |
| AcoI | YGGCCR | 2 cut(s) | 120, 2665 |
| AcsI | RAATTY | 7 cut(s) | 77, 90, 860, 1016, 1061, 1909, 2045 |
| AcvI | CACGTG | 1 cut(s) | 2417 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 56, 245, 419, 1104, 1660, 1964 |
| AflII | CTTAAG | 2 cut(s) | 11, 2741 |
| AflIII | ACRYGT | 3 cut(s) | 1002, 1762, 2416 |
| AgeI | ACCGGT | 1 cut(s) | 49 |
| AgsI | TTSAA | 9 cut(s) | 77, 89, 627, 1558, 1855, 1931, 2357, 2372, 2843 |
| AhlI | ACTAGT | 1 cut(s) | 1463 |
| AjnI | CCWGG | 5 cut(s) | 244, 1089, 1171, 1378, 1561 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1847, 1879 |
| Alw21I | GWGCWC | 5 cut(s) | 216, 332, 1171, 1839, 2284 |
| Alw26I | GTCTC | 4 cut(s) | 98, 2007, 2024, 2499 |
| Alw44I | GTGCAC | 1 cut(s) | 1835 |
| AlwI | GGATC | 3 cut(s) | 533, 878, 2822 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2389 |
| Ama87I | CYCGRG | 1 cut(s) | 1830 |
| AoxI | GGCC | 8 cut(s) | 120, 397, 646, 1564, 1782, 1986, 2361, 2665 |
| ApaLI | GTGCAC | 1 cut(s) | 1835 |
| ApeKI | GCWGC | 4 cut(s) | 224, 1585, 2074, 2627 |
| ApoI | RAATTY | 7 cut(s) | 77, 90, 860, 1016, 1061, 1909, 2045 |
| AsiGI | ACCGGT | 1 cut(s) | 49 |
| Asp718I | GGTACC | 1 cut(s) | 1820 |
| AspS9I | GGNCC | 7 cut(s) | 397, 563, 647, 823, 1362, 1782, 1986 |
| AsuHPI | GGTGA | 6 cut(s) | 16, 27, 35, 1907, 2021, 2093 |
| AsuII | TTCGAA | 1 cut(s) | 81 |
| AvaI | CYCGRG | 1 cut(s) | 1830 |
| AvaII | GGWCC | 3 cut(s) | 563, 823, 1362 |
| AxyI | CCTNAGG | 3 cut(s) | 939, 1185, 1644 |
| BaeGI | GKGCMC | 1 cut(s) | 1839 |
| BalI | TGGCCA | 1 cut(s) | 2667 |
| BanI | GGYRCC | 2 cut(s) | 1420, 1820 |
| BanII | GRGCYC | 2 cut(s) | 216, 1171 |
| BbrPI | CACGTG | 1 cut(s) | 2417 |
| BbsI | GAAGAC | 2 cut(s) | 1341, 1495 |
| Bbv12I | GWGCWC | 5 cut(s) | 216, 332, 1171, 1839, 2284 |
| BbvI | GCAGC | 4 cut(s) | 211, 1597, 2061, 2614 |
| BccI | CCATC | 6 cut(s) | 266, 365, 820, 1697, 2456, 2616 |
| BceAI | ACGGC | 1 cut(s) | 2144 |
| BciT130I | CCWGG | 5 cut(s) | 246, 1091, 1173, 1380, 1563 |
| BciVI | GTATCC | 2 cut(s) | 2597, 2858 |
| BclI | TGATCA | 1 cut(s) | 582 |
| BcoDI | GTCTC | 4 cut(s) | 98, 2007, 2024, 2499 |
| BcuI | ACTAGT | 1 cut(s) | 1463 |
| BfmI | CTRYAG | 3 cut(s) | 1573, 2628, 2914 |
| BfrI | CTTAAG | 2 cut(s) | 11, 2741 |
| BfuAI | ACCTGC | 1 cut(s) | 742 |
| BfuI | GTATCC | 2 cut(s) | 2597, 2858 |
| BglII | AGATCT | 1 cut(s) | 365 |
| BisI | GCNGC | 4 cut(s) | 225, 1586, 2075, 2628 |
| BlpI | GCTNAGC | 1 cut(s) | 909 |
| BlsI | GCNGC | 4 cut(s) | 226, 1587, 2076, 2629 |
| BmcAI | AGTACT | 1 cut(s) | 2789 |
| Bme1390I | CCNGG | 5 cut(s) | 246, 1091, 1173, 1380, 1563 |
| Bme18I | GGWCC | 3 cut(s) | 563, 823, 1362 |
| BmeT110I | CYCGRG | 1 cut(s) | 1830 |
| BmgT120I | GGNCC | 7 cut(s) | 397, 563, 647, 823, 1362, 1782, 1986 |
| BmrFI | CCNGG | 5 cut(s) | 246, 1091, 1173, 1380, 1563 |
| BmrI | ACTGGG | 1 cut(s) | 718 |
| BmsI | GCATC | 5 cut(s) | 418, 523, 744, 1612, 2157 |
| BmuI | ACTGGG | 1 cut(s) | 718 |
| BpiI | GAAGAC | 2 cut(s) | 1341, 1495 |
| BpmI | CTGGAG | 5 cut(s) | 209, 267, 1155, 2421, 2878 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 909 |
| Bpu14I | TTCGAA | 1 cut(s) | 81 |
| BpuEI | CTTGAG | 2 cut(s) | 1799, 2614 |
| BsaAI | YACGTR | 1 cut(s) | 2417 |
| BsaBI | GATNNNNATC | 2 cut(s) | 537, 2523 |
| BsaI | GGTCTC | 2 cut(s) | 2007, 2499 |
| BsaJI | CCNNGG | 1 cut(s) | 2682 |
| BsaWI | WCCGGW | 2 cut(s) | 49, 268 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 873, 903, 2808, 2838 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 56, 245, 419, 1104, 1660, 1964 |
| Bse118I | RCCGGY | 2 cut(s) | 49, 167 |
| Bse1I | ACTGG | 7 cut(s) | 321, 381, 724, 887, 1969, 2438, 2861 |
| Bse21I | CCTNAGG | 3 cut(s) | 939, 1185, 1644 |
| Bse3DI | GCAATG | 2 cut(s) | 957, 2106 |
| Bse8I | GATNNNNATC | 2 cut(s) | 537, 2523 |
| BseBI | CCWGG | 5 cut(s) | 246, 1091, 1173, 1380, 1563 |
| BseDI | CCNNGG | 1 cut(s) | 2682 |
| BseJI | GATNNNNATC | 2 cut(s) | 537, 2523 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 56, 245, 419, 1104, 1660, 1964 |
| BseMI | GCAATG | 2 cut(s) | 957, 2106 |
| BseNI | ACTGG | 7 cut(s) | 321, 381, 724, 887, 1969, 2438, 2861 |
| BseRI | GAGGAG | 5 cut(s) | 206, 228, 956, 1685, 2262 |
| BseSI | GKGCMC | 1 cut(s) | 1839 |
| BseXI | GCAGC | 4 cut(s) | 211, 1597, 2061, 2614 |
| BsgI | GTGCAG | 2 cut(s) | 2402, 2782 |
| BshFI | GGCC | 8 cut(s) | 122, 399, 648, 1566, 1784, 1988, 2363, 2667 |
| BshNI | GGYRCC | 2 cut(s) | 1420, 1820 |
| BshTI | ACCGGT | 1 cut(s) | 49 |
| BsiHKAI | GWGCWC | 5 cut(s) | 216, 332, 1171, 1839, 2284 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1830 |
| BsiSI | CCGG | 5 cut(s) | 50, 57, 168, 217, 269 |
| BslFI | GGGAC | 3 cut(s) | 195, 304, 1375 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 56, 245, 419, 1104, 1660, 1964 |
| BsmAI | GTCTC | 4 cut(s) | 98, 2007, 2024, 2499 |
| BsmFI | GGGAC | 3 cut(s) | 195, 304, 1375 |
| BsmI | GAATGC | 1 cut(s) | 2629 |
| BsnI | GGCC | 8 cut(s) | 122, 399, 648, 1566, 1784, 1988, 2363, 2667 |
| Bso31I | GGTCTC | 2 cut(s) | 2007, 2499 |
| BsoBI | CYCGRG | 1 cut(s) | 1830 |
| Bsp119I | TTCGAA | 1 cut(s) | 81 |
| Bsp1286I | GDGCHC | 5 cut(s) | 216, 332, 1171, 1839, 2284 |
| Bsp1407I | TGTACA | 1 cut(s) | 1759 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 909 |
| Bsp19I | CCATGG | 1 cut(s) | 2682 |
| BspACI | CCGC | 3 cut(s) | 20, 263, 1212 |
| BspANI | GGCC | 8 cut(s) | 122, 399, 648, 1566, 1784, 1988, 2363, 2667 |
| BspMAI | CTGCAG | 1 cut(s) | 2632 |
| BspMI | ACCTGC | 1 cut(s) | 742 |
| BspPI | GGATC | 3 cut(s) | 533, 878, 2822 |
| BspQI | GCTCTTC | 2 cut(s) | 1159, 1513 |
| BspT104I | TTCGAA | 1 cut(s) | 81 |
| BspT107I | GGYRCC | 2 cut(s) | 1420, 1820 |
| BspTI | CTTAAG | 2 cut(s) | 11, 2741 |
| BspTNI | GGTCTC | 2 cut(s) | 2007, 2499 |
| BsrDI | GCAATG | 2 cut(s) | 957, 2106 |
| BsrFI | RCCGGY | 2 cut(s) | 49, 167 |
| BsrGI | TGTACA | 1 cut(s) | 1759 |
| BsrI | ACTGG | 7 cut(s) | 321, 381, 724, 887, 1969, 2438, 2861 |
| BssAI | RCCGGY | 2 cut(s) | 49, 167 |
| BssECI | CCNNGG | 1 cut(s) | 2682 |
| BssT1I | CCWWGG | 1 cut(s) | 2682 |
| Bst2UI | CCWGG | 5 cut(s) | 246, 1091, 1173, 1380, 1563 |
| Bst4CI | ACNGT | 7 cut(s) | 639, 686, 1448, 1574, 2053, 2194, 2512 |
| Bst6I | CTCTTC | 3 cut(s) | 355, 1159, 1513 |
| BstAFI | CTTAAG | 2 cut(s) | 11, 2741 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 442 |
| BstAUI | TGTACA | 1 cut(s) | 1759 |
| BstBAI | YACGTR | 1 cut(s) | 2417 |
| BstBI | TTCGAA | 1 cut(s) | 81 |
| BstC8I | GCNNGC | 7 cut(s) | 62, 222, 438, 1245, 1419, 1990, 2908 |
| BstDSI | CCRYGG | 1 cut(s) | 2682 |
| BstMAI | GTCTC | 4 cut(s) | 98, 2007, 2024, 2499 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 119, 442, 853, 1209, 1874 |
| BstNI | CCWGG | 5 cut(s) | 246, 1091, 1173, 1380, 1563 |
| BstNSI | RCATGY | 3 cut(s) | 440, 1006, 1766 |
| BstSCI | CCNGG | 5 cut(s) | 244, 1089, 1171, 1378, 1561 |
| BstSFI | CTRYAG | 3 cut(s) | 1573, 2628, 2914 |
| BstSLI | GKGCMC | 1 cut(s) | 1839 |
| BstV1I | GCAGC | 4 cut(s) | 211, 1597, 2061, 2614 |
| BstV2I | GAAGAC | 2 cut(s) | 1341, 1495 |
| BstX2I | RGATCY | 2 cut(s) | 365, 883 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 894 |
| BstYI | RGATCY | 2 cut(s) | 365, 883 |
| Bsu36I | CCTNAGG | 3 cut(s) | 939, 1185, 1644 |
| BsuI | GTATCC | 2 cut(s) | 2597, 2858 |
| BsuRI | GGCC | 8 cut(s) | 122, 399, 648, 1566, 1784, 1988, 2363, 2667 |
| BtgI | CCRYGG | 1 cut(s) | 2682 |
| BtgZI | GCGATG | 1 cut(s) | 343 |
| BtsI | GCAGTG | 1 cut(s) | 252 |
| BtsIMutI | CAGTG | 9 cut(s) | 252, 314, 388, 649, 691, 880, 1072, 1453, 2812 |
| BveI | ACCTGC | 1 cut(s) | 742 |
| Cac8I | GCNNGC | 7 cut(s) | 62, 222, 438, 1245, 1419, 1990, 2908 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2389 |
| Cfr10I | RCCGGY | 2 cut(s) | 49, 167 |
| Cfr13I | GGNCC | 7 cut(s) | 397, 563, 647, 823, 1362, 1782, 1986 |
| CsiI | ACCWGGT | 1 cut(s) | 1089 |
| CspAI | ACCGGT | 1 cut(s) | 49 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 510, 545, 2517, 2552, 2799, 2834 |
| EaeI | YGGCCR | 2 cut(s) | 120, 2665 |
| Eam1104I | CTCTTC | 3 cut(s) | 355, 1159, 1513 |
| EarI | CTCTTC | 3 cut(s) | 355, 1159, 1513 |
| EciI | GGCGGA | 1 cut(s) | 1227 |
| Ecl136II | GAGCTC | 2 cut(s) | 214, 1169 |
| Eco130I | CCWWGG | 1 cut(s) | 2682 |
| Eco24I | GRGCYC | 2 cut(s) | 216, 1171 |
| Eco31I | GGTCTC | 2 cut(s) | 2007, 2499 |
| Eco47I | GGWCC | 3 cut(s) | 563, 823, 1362 |
| Eco53kI | GAGCTC | 2 cut(s) | 214, 1169 |
| Eco72I | CACGTG | 1 cut(s) | 2417 |
| Eco81I | CCTNAGG | 3 cut(s) | 939, 1185, 1644 |
| Eco88I | CYCGRG | 1 cut(s) | 1830 |
| EcoICRI | GAGCTC | 2 cut(s) | 214, 1169 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1362 |
| EcoRI | GAATTC | 3 cut(s) | 77, 1016, 1061 |
| EcoRII | CCWGG | 5 cut(s) | 244, 1089, 1171, 1378, 1561 |
| EcoT14I | CCWWGG | 1 cut(s) | 2682 |
| EcoT22I | ATGCAT | 2 cut(s) | 747, 807 |
| EcoT38I | GRGCYC | 2 cut(s) | 216, 1171 |
| ErhI | CCWWGG | 1 cut(s) | 2682 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 2576, 2608, 2966 |
| FaqI | GGGAC | 3 cut(s) | 195, 304, 1375 |
| FauI | CCCGC | 1 cut(s) | 13 |
| FbaI | TGATCA | 1 cut(s) | 582 |
| Fnu4HI | GCNGC | 4 cut(s) | 225, 1586, 2075, 2628 |
| FriOI | GRGCYC | 2 cut(s) | 216, 1171 |
| Fsp4HI | GCNGC | 4 cut(s) | 225, 1586, 2075, 2628 |
| GluI | GCNGC | 4 cut(s) | 225, 1586, 2075, 2628 |
| GsuI | CTGGAG | 5 cut(s) | 209, 267, 1155, 2421, 2878 |
| HaeIII | GGCC | 8 cut(s) | 122, 399, 648, 1566, 1784, 1988, 2363, 2667 |
| HapII | CCGG | 5 cut(s) | 50, 57, 168, 217, 269 |
| HindIII | AAGCTT | 3 cut(s) | 8, 1154, 1272 |
| HpaII | CCGG | 5 cut(s) | 50, 57, 168, 217, 269 |
| HphI | GGTGA | 6 cut(s) | 16, 27, 35, 1907, 2021, 2093 |
| Hpy166II | GTNNAC | 8 cut(s) | 140, 612, 689, 1760, 1837, 2250, 2580, 2864 |
| Hpy8I | GTNNAC | 8 cut(s) | 140, 612, 689, 1760, 1837, 2250, 2580, 2864 |
| HpyAV | CCTTC | 4 cut(s) | 1304, 1481, 1564, 2452 |
| HpyCH4III | ACNGT | 7 cut(s) | 639, 686, 1448, 1574, 2053, 2194, 2512 |
| HpyCH4IV | ACGT | 1 cut(s) | 2416 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 119, 442, 853, 1209, 1874 |
| HpySE526I | ACGT | 1 cut(s) | 2416 |
| KpnI | GGTACC | 1 cut(s) | 1824 |
| Ksp22I | TGATCA | 1 cut(s) | 582 |
| LguI | GCTCTTC | 2 cut(s) | 1159, 1513 |
| LmnI | GCTCC | 5 cut(s) | 219, 1129, 1174, 1672, 2386 |
| Lsp1109I | GCAGC | 4 cut(s) | 211, 1597, 2061, 2614 |
| LweI | GCATC | 5 cut(s) | 418, 523, 744, 1612, 2157 |
| MabI | ACCWGGT | 1 cut(s) | 1089 |
| MaeII | ACGT | 1 cut(s) | 2416 |
| MboII | GAAGA | 7 cut(s) | 342, 1176, 1341, 1344, 1500, 1530, 2424 |
| MflI | RGATCY | 2 cut(s) | 365, 883 |
| MhlI | GDGCHC | 5 cut(s) | 216, 332, 1171, 1839, 2284 |
| MlsI | TGGCCA | 1 cut(s) | 2667 |
| MluNI | TGGCCA | 1 cut(s) | 2667 |
| MlyI | GAGTC | 5 cut(s) | 286, 1485, 1769, 2431, 2669 |
| MmeI | TCCRAC | 6 cut(s) | 301, 680, 1392, 1451, 1484, 2373 |
| Mox20I | TGGCCA | 1 cut(s) | 2667 |
| Mph1103I | ATGCAT | 2 cut(s) | 747, 807 |
| MscI | TGGCCA | 1 cut(s) | 2667 |
| MseI | TTAA | 7 cut(s) | 12, 1398, 1746, 1997, 2229, 2409, 2742 |
| MslI | CAYNNNNRTG | 3 cut(s) | 99, 1595, 2963 |
| Msp20I | TGGCCA | 1 cut(s) | 2667 |
| MspA1I | CMGCKG | 2 cut(s) | 1992, 2074 |
| MspCI | CTTAAG | 2 cut(s) | 11, 2741 |
| MspI | CCGG | 5 cut(s) | 50, 57, 168, 217, 269 |
| MspR9I | CCNGG | 5 cut(s) | 246, 1091, 1173, 1380, 1563 |
| Mva1269I | GAATGC | 1 cut(s) | 2629 |
| MvaI | CCWGG | 5 cut(s) | 246, 1091, 1173, 1380, 1563 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 119, 442, 853, 1209, 1874 |
| NcoI | CCATGG | 1 cut(s) | 2682 |
| NmeAIII | GCCGAG | 2 cut(s) | 148, 2389 |
| NmuCI | GTSAC | 5 cut(s) | 307, 715, 1010, 1960, 2009 |
| NsiI | ATGCAT | 2 cut(s) | 747, 807 |
| NspI | RCATGY | 3 cut(s) | 440, 1006, 1766 |
| NspV | TTCGAA | 1 cut(s) | 81 |
| PaeI | GCATGC | 1 cut(s) | 440 |
| PaeR7I | CTCGAG | 1 cut(s) | 1830 |
| PciI | ACATGT | 2 cut(s) | 1002, 1762 |
| PciSI | GCTCTTC | 2 cut(s) | 1159, 1513 |
| PctI | GAATGC | 1 cut(s) | 2629 |
| PfeI | GAWTC | 6 cut(s) | 146, 259, 338, 829, 1111, 1528 |
| PfoI | TCCNGGA | 1 cut(s) | 1171 |
| PinAI | ACCGGT | 1 cut(s) | 49 |
| PkrI | GCNGC | 4 cut(s) | 226, 1587, 2076, 2629 |
| PleI | GAGTC | 5 cut(s) | 286, 1485, 1769, 2430, 2669 |
| PmaCI | CACGTG | 1 cut(s) | 2417 |
| PmlI | CACGTG | 1 cut(s) | 2417 |
| PpsI | GAGTC | 5 cut(s) | 286, 1485, 1769, 2430, 2669 |
| Ppu21I | YACGTR | 1 cut(s) | 2417 |
| PpuMI | RGGWCCY | 1 cut(s) | 1362 |
| PscI | ACATGT | 2 cut(s) | 1002, 1762 |
| PsiI | TTATAA | 2 cut(s) | 789, 1074 |
| Psp124BI | GAGCTC | 2 cut(s) | 216, 1171 |
| Psp5II | RGGWCCY | 1 cut(s) | 1362 |
| Psp6I | CCWGG | 5 cut(s) | 244, 1089, 1171, 1378, 1561 |
| PspCI | CACGTG | 1 cut(s) | 2417 |
| PspGI | CCWGG | 5 cut(s) | 244, 1089, 1171, 1378, 1561 |
| PspPI | GGNCC | 7 cut(s) | 397, 563, 647, 823, 1362, 1782, 1986 |
| PspPPI | RGGWCCY | 1 cut(s) | 1362 |
| PspXI | VCTCGAGB | 1 cut(s) | 1830 |
| PstI | CTGCAG | 1 cut(s) | 2632 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2389 |
| PsuI | RGATCY | 2 cut(s) | 365, 883 |
| PvuII | CAGCTG | 2 cut(s) | 1992, 2074 |
| RseI | CAYNNNNRTG | 3 cut(s) | 99, 1595, 2963 |
| SacI | GAGCTC | 2 cut(s) | 216, 1171 |
| SapI | GCTCTTC | 2 cut(s) | 1159, 1513 |
| SaqAI | TTAA | 7 cut(s) | 12, 1398, 1746, 1997, 2229, 2409, 2742 |
| SatI | GCNGC | 4 cut(s) | 225, 1586, 2075, 2628 |
| Sau96I | GGNCC | 7 cut(s) | 397, 563, 647, 823, 1362, 1782, 1986 |
| ScaI | AGTACT | 1 cut(s) | 2789 |
| SchI | GAGTC | 5 cut(s) | 286, 1485, 1769, 2431, 2669 |
| ScrFI | CCNGG | 5 cut(s) | 246, 1091, 1173, 1380, 1563 |
| SduI | GDGCHC | 5 cut(s) | 216, 332, 1171, 1839, 2284 |
| SexAI | ACCWGGT | 1 cut(s) | 1089 |
| SfaNI | GCATC | 5 cut(s) | 418, 523, 744, 1612, 2157 |
| SfcI | CTRYAG | 3 cut(s) | 1573, 2628, 2914 |
| Sfr274I | CTCGAG | 1 cut(s) | 1830 |
| SfuI | TTCGAA | 1 cut(s) | 81 |
| SinI | GGWCC | 3 cut(s) | 563, 823, 1362 |
| SlaI | CTCGAG | 1 cut(s) | 1830 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 99, 1595, 2963 |
| SmlI | CTYRAG | 5 cut(s) | 11, 1814, 1830, 2593, 2741 |
| SmoI | CTYRAG | 5 cut(s) | 11, 1814, 1830, 2593, 2741 |
| SpeI | ACTAGT | 1 cut(s) | 1463 |
| SphI | GCATGC | 1 cut(s) | 440 |
| SsiI | CCGC | 3 cut(s) | 20, 263, 1212 |
| SstI | GAGCTC | 2 cut(s) | 216, 1171 |
| StyD4I | CCNGG | 5 cut(s) | 244, 1089, 1171, 1378, 1561 |
| StyI | CCWWGG | 1 cut(s) | 2682 |
| TaaI | ACNGT | 7 cut(s) | 639, 686, 1448, 1574, 2053, 2194, 2512 |
| TaiI | ACGT | 1 cut(s) | 2419 |
| TaqI | TCGA | 6 cut(s) | 81, 97, 891, 1773, 1831, 2722 |
| TatI | WGTACW | 4 cut(s) | 424, 1759, 2053, 2787 |
| TfiI | GAWTC | 6 cut(s) | 146, 259, 338, 829, 1111, 1528 |
| Tru1I | TTAA | 7 cut(s) | 12, 1398, 1746, 1997, 2229, 2409, 2742 |
| Tru9I | TTAA | 7 cut(s) | 12, 1398, 1746, 1997, 2229, 2409, 2742 |
| TscAI | CASTG | 9 cut(s) | 259, 321, 388, 649, 691, 880, 1072, 1453, 2812 |
| TseFI | GTSAC | 5 cut(s) | 307, 715, 1010, 1960, 2009 |
| TseI | GCWGC | 4 cut(s) | 224, 1585, 2074, 2627 |
| Tsp45I | GTSAC | 5 cut(s) | 307, 715, 1010, 1960, 2009 |
| TspGWI | ACGGA | 1 cut(s) | 1646 |
| TspRI | CASTG | 9 cut(s) | 259, 321, 388, 649, 691, 880, 1072, 1453, 2812 |
| Vha464I | CTTAAG | 2 cut(s) | 11, 2741 |
| VneI | GTGCAC | 1 cut(s) | 1835 |
| VpaK11BI | GGWCC | 3 cut(s) | 563, 823, 1362 |
| XapI | RAATTY | 7 cut(s) | 77, 90, 860, 1016, 1061, 1909, 2045 |
| XbaI | TCTAGA | 1 cut(s) | 1160 |
| XceI | RCATGY | 3 cut(s) | 440, 1006, 1766 |
| XhoI | CTCGAG | 1 cut(s) | 1830 |
| ZrmI | AGTACT | 1 cut(s) | 2789 |
| Zsp2I | ATGCAT | 2 cut(s) | 747, 807 |