Rw6G019400

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000756
Physical Location & Seq
Reverse (-)
38757645 .. 38758544
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019400.1

Sequence Viewer

Length: 678 bp
ATGCCTGAGCATATATTGTCTGACAGGGATCCAATGAGCCCTTTTCAAGCTCTATATGGATATCAGCCCCCCTCAGTAGCTCCTTATTTGCCTGGCTCTACAGCAGTTGCACTAGTTGACAAACAATTGCAAAAAAGAGACGACTTGCTCGCTTTACTCAAGAGAAATCTGCAACTCGCTCAGTCAAGGATGAAAACTTTCTATGACAAGAAACACACAGAGAGGGAGTTTACAGTGGATGATTGGGTGTATCTTAAGCTACAACCTTATAGACAACAATCTGTGCATCAACATGACCTGCACAAGCTCTCTCCCAGGTACTATGGACCTTACAAAATCCTTGAAAAGATTGGGAAGGTTGCCTATAGACTCCAGCTGCCACCCTCAGCCAAAATACATAATGTCTTCCATGTATCTCTTCTAAAGAAAAAAATTGGGAATTCTGTGACTCCTTCTGCTCAGTTGCCATTTGTGATAGACTCAGACAATCCTAAATGGGCACCTGAAGCTATACTGCAGAGGAGAATTTTCAAAAAAAATGGTGCTGCTGCTACCCAATGGTTAGTGCAATGGTTTGGTGCTTCTCCAGAAGAAGCCACATGGGAAGATGCAGCTGTGATACAACTGCGATTCCCAAATTTTGACCCGGAGGCTTCCTCGCGTACTCACCACGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

225

Amino Acids

25.91

Weight (kDa)

9.52

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 81 - 144 5.7e-25 Tf2-1-like, SH3 domain
Integrase_p58_C PF22938 109 - 143 3.1e-09 Integrase p58, C-terminal domain
Chromo PF00385 166 - 212 8.5e-08 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 499
AccII CGCG 1 cut(s) 661
AclWI GGATC 2 cut(s) 23, 36
AcsI RAATTY 3 cut(s) 439, 525, 637
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 2 cut(s) 320, 664
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 3 cut(s) 47, 344, 532
AhlI ACTAGT 1 cut(s) 112
AjnI CCWGG 2 cut(s) 91, 314
AluBI AGCT 7 cut(s) 50, 80, 259, 307, 376, 509, 614
AluI AGCT 7 cut(s) 50, 80, 259, 307, 376, 509, 614
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 2 cut(s) 23, 36
ApeKI GCWGC 4 cut(s) 376, 545, 548, 611
ApoI RAATTY 3 cut(s) 439, 525, 637
Asp700I GAANNNNTTC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 647
AsuHPI GGTGA 1 cut(s) 659
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 502
BamHI GGATCC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 499
BanII GRGCYC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 397
BbvCI CCTCAGC 1 cut(s) 385
BbvI GCAGC 4 cut(s) 363, 532, 535, 623
BciT130I CCWGG 2 cut(s) 93, 316
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 1 cut(s) 132
BcuI ACTAGT 1 cut(s) 112
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 3 cut(s) 99, 364, 515
BfrI CTTAAG 1 cut(s) 254
BfuAI ACCTGC 1 cut(s) 306
BisI GCNGC 4 cut(s) 377, 546, 549, 612
BlsI GCNGC 4 cut(s) 378, 547, 550, 613
Bme1390I CCNGG 3 cut(s) 93, 316, 647
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 30, 501
BmrFI CCNGG 3 cut(s) 93, 316, 647
BmsI GCATC 2 cut(s) 295, 598
BpiI GAAGAC 1 cut(s) 397
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpmI CTGGAG 2 cut(s) 356, 570
Bpu10I CCTNAGC 2 cut(s) 6, 385
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 575
BseBI CCWGG 2 cut(s) 93, 316
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 2 cut(s) 195, 244
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 5 cut(s) 87, 194, 399, 473, 495
BseRI GAGGAG 1 cut(s) 535
BseSI GKGCMC 1 cut(s) 502
BseXI GCAGC 4 cut(s) 363, 532, 535, 623
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 661
BshNI GGYRCC 1 cut(s) 499
BsiSI CCGG 1 cut(s) 647
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 41, 502
Bsp143I GATC 1 cut(s) 28
BspCNI CTCAG 5 cut(s) 86, 193, 398, 472, 494
BspFNI CGCG 1 cut(s) 661
BspLI GGNNCC 2 cut(s) 30, 501
BspMAI CTGCAG 1 cut(s) 519
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 2 cut(s) 23, 36
BspT107I GGYRCC 1 cut(s) 499
BspTI CTTAAG 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 575
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 93, 316
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 423
BstAFI CTTAAG 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 6 cut(s) 6, 73, 180, 385, 459, 481
BstF5I GGATG 2 cut(s) 195, 244
BstFNI CGCG 1 cut(s) 661
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 2 cut(s) 93, 316
BstSCI CCNGG 3 cut(s) 91, 314, 645
BstSFI CTRYAG 3 cut(s) 99, 364, 515
BstSLI GKGCMC 1 cut(s) 502
BstUI CGCG 1 cut(s) 661
BstV1I GCAGC 4 cut(s) 363, 532, 535, 623
BstV2I GAAGAC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtsCI GGATG 2 cut(s) 195, 244
BtsIMutI CAGTG 1 cut(s) 240
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 319, 663
CviAII CATG 3 cut(s) 293, 410, 600
CviQI GTAC 2 cut(s) 319, 663
DdeI CTNAG 6 cut(s) 6, 73, 180, 385, 459, 481
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 2 cut(s) 91, 314
EcoRV GATATC 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 3 cut(s) 296, 413, 603
FatI CATG 3 cut(s) 292, 409, 599
Fnu4HI GCNGC 4 cut(s) 377, 546, 549, 612
FokI GGATG 2 cut(s) 202, 251
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 4 cut(s) 377, 546, 549, 612
FspBI CTAG 1 cut(s) 113
GluI GCNGC 4 cut(s) 377, 546, 549, 612
GsuI CTGGAG 2 cut(s) 356, 570
HapII CCGG 1 cut(s) 647
Hin1II CATG 3 cut(s) 296, 413, 603
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 4 cut(s) 369, 448, 479, 630
HpaII CCGG 1 cut(s) 647
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 2 cut(s) 118, 231
Hpy188I TCNGA 2 cut(s) 22, 484
Hpy188III TCNNGA 2 cut(s) 160, 587
Hpy8I GTNNAC 2 cut(s) 118, 231
HpyAV CCTTC 2 cut(s) 349, 462
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 8 cut(s) 110, 130, 172, 286, 301, 517, 568, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 6 cut(s) 6, 73, 180, 385, 459, 481
Hsp92II CATG 3 cut(s) 296, 413, 603
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 4 cut(s) 363, 532, 535, 623
LweI GCATC 2 cut(s) 295, 598
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 445
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 4 cut(s) 397, 410, 602, 617
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 41, 502
MluCI AATT 5 cut(s) 125, 432, 439, 525, 637
MlyI GAGTC 3 cut(s) 363, 442, 473
MnlI CCTC 6 cut(s) 82, 216, 394, 513, 643, 667
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 2 cut(s) 376, 614
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 3 cut(s) 93, 316, 647
MunI CAATTG 1 cut(s) 125
MvaI CCWGG 2 cut(s) 93, 316
MvnI CGCG 1 cut(s) 661
MwoI GCNNNNNNNGC 1 cut(s) 506
NciI CCSGG 1 cut(s) 647
NdeII GATC 1 cut(s) 28
NlaIII CATG 3 cut(s) 296, 413, 603
NlaIV GGNNCC 2 cut(s) 30, 501
NmuCI GTSAC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 630
PkrI GCNGC 4 cut(s) 378, 547, 550, 613
PleI GAGTC 3 cut(s) 363, 442, 473
PpsI GAGTC 3 cut(s) 363, 442, 473
Psp6I CCWGG 2 cut(s) 91, 314
PspGI CCWGG 2 cut(s) 91, 314
PspN4I GGNNCC 2 cut(s) 30, 501
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 1 cut(s) 519
PsuI RGATCY 1 cut(s) 28
PvuII CAGCTG 2 cut(s) 376, 614
RsaI GTAC 2 cut(s) 320, 664
RsaNI GTAC 2 cut(s) 319, 663
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 4 cut(s) 377, 546, 549, 612
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 3 cut(s) 363, 442, 473
ScrFI CCNGG 3 cut(s) 93, 316, 647
SduI GDGCHC 2 cut(s) 41, 502
SfaNI GCATC 2 cut(s) 295, 598
SfcI CTRYAG 3 cut(s) 99, 364, 515
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 2 cut(s) 158, 254
SmoI CTYRAG 2 cut(s) 158, 254
SpeI ACTAGT 1 cut(s) 112
Sse9I AATT 5 cut(s) 125, 432, 439, 525, 637
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 3 cut(s) 91, 314, 645
TaaI ACNGT 1 cut(s) 235
TasI AATT 5 cut(s) 125, 432, 439, 525, 637
TfiI GAWTC 1 cut(s) 630
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 4 cut(s) 376, 545, 548, 611
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 3 cut(s) 439, 525, 637
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.