Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01013

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Reverse (-)

105080 .. 105697

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGTCCTTTTCAGGCATTGTATGGAGTTCCTCCTCCTCAGGTGCATTCATACATTCCTGGCACCACCTCTGTGCATCAGGTAGATGAGATGTTGAAAAATAGAGATGAATTGTTGGGAACTCTCAAAAGAAACTTGGCTCAGGCCCAACAAAGGATGAAGGCATATTATGACAAGCATCACACAGATAGGGAGTTCAATGTGGGGGATTGGGTGTTTCTCAAACTTCAACCTTATAGGCAACAGTCAGTACAAAAGAGGAAGTCACACAAACTAGCTCCTAAGTTCTTTGGACCCTTCCAGGTCATAGAAAGGATTGGGAAAGTGGCGTATAAGTTGCAGCTACCTCCTACTGCAAAAGTTCATCCTGTTTTTCACGTTTCTTTGCTCAAGAAGAAATTGGGTGAGTGTGTCATCACTTCTCCTCACTTACCTCCTGAATTTGACTCTAACAAAGAGAATTGGTCTCCTGCTAAAGTGTTGGATAGAGCTATGTTTAAACAAGGGAATGCTCCAGTGGTTAAGTGGTTGATACAGTTGAAGAATGGTACTGAAGAAGATGCTACTTGGGAAGATGTTAACAACTTGCAGCTGCGTTTTCCAGATTTCAAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

205

Amino Acids

23.68

Weight (kDa)

9.64

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	9.5e-27	Tf2-1-like, SH3 domain
Integrase_p58_C	PF22938	98 - 132	2.6e-07	Integrase p58, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	2 cut(s)	252, 550
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	5 cut(s)	97, 199, 230, 541, 610
AjnI	CCWGG	2 cut(s)	58, 300
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	4 cut(s)	278, 343, 491, 592
AluI	AGCT	4 cut(s)	278, 343, 491, 592
Alw26I	GTCTC	1 cut(s)	471
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	340, 589, 592
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	145, 293
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	62
BbvI	GCAGC	3 cut(s)	352, 579, 601
BciT130I	CCWGG	2 cut(s)	60, 302
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	3 cut(s)	341, 590, 593
BlsI	GCNGC	3 cut(s)	342, 591, 594
Bme1390I	CCNGG	2 cut(s)	60, 302
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	145, 293
BmiI	GGNNCC	2 cut(s)	64, 295
BmrFI	CCNGG	2 cut(s)	60, 302
BmsI	GCATC	3 cut(s)	85, 187, 550
BpmI	CTGGAG	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	515
Bse21I	CCTNAGG	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	60, 302
BseGI	GGATG	2 cut(s)	162, 364
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	53, 155
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	3 cut(s)	24, 27, 414
BseXI	GCAGC	3 cut(s)	352, 579, 601
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	471
BsmI	GAATGC	2 cut(s)	46, 514
BsnI	GGCC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	471
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	2 cut(s)	52, 154
BspLI	GGNNCC	2 cut(s)	64, 295
BspT107I	GGYRCC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	515
Bst2UI	CCWGG	2 cut(s)	60, 302
Bst4CI	ACNGT	2 cut(s)	246, 537
BstDEI	CTNAG	3 cut(s)	39, 141, 282
BstF5I	GGATG	2 cut(s)	162, 364
BstMAI	GTCTC	1 cut(s)	471
BstNI	CCWGG	2 cut(s)	60, 302
BstSCI	CCNGG	2 cut(s)	58, 300
BstV1I	GCAGC	3 cut(s)	352, 579, 601
Bsu36I	CCTNAGG	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	162, 364
BtsIMutI	CAGTG	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	145, 293
Csp6I	GTAC	2 cut(s)	251, 549
CviJI	RGCY	6 cut(s)	140, 146, 278, 343, 491, 592
CviKI_1	RGCY	6 cut(s)	140, 146, 278, 343, 491, 592
CviQI	GTAC	2 cut(s)	251, 549
DdeI	CTNAG	3 cut(s)	39, 141, 282
DraI	TTTAAA	1 cut(s)	499
Eco31I	GGTCTC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	573
Eco81I	CCTNAGG	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	58, 300
FaiI	YATR	8 cut(s)	24, 52, 166, 171, 237, 308, 333, 494
Fnu4HI	GCNGC	3 cut(s)	341, 590, 593
FokI	GGATG	2 cut(s)	169, 351
Fsp4HI	GCNGC	3 cut(s)	341, 590, 593
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	3 cut(s)	341, 590, 593
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	2 cut(s)	4, 446
HpaI	GTTAAC	1 cut(s)	580
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188III	TCNNGA	3 cut(s)	391, 437, 602
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	2 cut(s)	154, 307
HpyCH4III	ACNGT	2 cut(s)	246, 537
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	5 cut(s)	46, 76, 340, 356, 589
HpyF3I	CTNAG	3 cut(s)	39, 141, 282
HpySE526I	ACGT	1 cut(s)	378
KspAI	GTTAAC	1 cut(s)	580
LmnI	GCTCC	2 cut(s)	283, 517
Lsp1109I	GCAGC	3 cut(s)	352, 579, 601
LweI	GCATC	3 cut(s)	85, 187, 550
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	264
MboII	GAAGA	5 cut(s)	406, 553, 566, 569, 584
MluCI	AATT	4 cut(s)	110, 398, 440, 460
MlyI	GAGTC	2 cut(s)	13, 440
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	8 cut(s)	42, 45, 48, 79, 252, 357, 435, 444
MseI	TTAA	4 cut(s)	498, 522, 579, 616
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	592
MspR9I	CCNGG	2 cut(s)	60, 302
MssI	GTTTAAAC	1 cut(s)	499
Mva1269I	GAATGC	2 cut(s)	46, 514
MvaI	CCWGG	2 cut(s)	60, 302
NlaIV	GGNNCC	2 cut(s)	64, 295
NmuCI	GTSAC	1 cut(s)	264
OliI	CACNNNNGTG	1 cut(s)	71
PctI	GAATGC	2 cut(s)	46, 514
PkrI	GCNGC	3 cut(s)	342, 591, 594
PleI	GAGTC	2 cut(s)	12, 440
PmeI	GTTTAAAC	1 cut(s)	499
PpsI	GAGTC	2 cut(s)	12, 440
Psp6I	CCWGG	2 cut(s)	58, 300
PspGI	CCWGG	2 cut(s)	58, 300
PspN4I	GGNNCC	2 cut(s)	64, 295
PspPI	GGNCC	2 cut(s)	145, 293
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	2 cut(s)	252, 550
RsaNI	GTAC	2 cut(s)	251, 549
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	4 cut(s)	498, 522, 579, 616
SatI	GCNGC	3 cut(s)	341, 590, 593
Sau96I	GGNCC	2 cut(s)	145, 293
SchI	GAGTC	2 cut(s)	13, 440
ScrFI	CCNGG	2 cut(s)	60, 302
SfaNI	GCATC	3 cut(s)	85, 187, 550
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	110, 398, 440, 460
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	58, 300
TaaI	ACNGT	2 cut(s)	246, 537
TaiI	ACGT	1 cut(s)	381
TasI	AATT	4 cut(s)	110, 398, 440, 460
TatI	WGTACW	1 cut(s)	250
Tru1I	TTAA	4 cut(s)	498, 522, 579, 616
Tru9I	TTAA	4 cut(s)	498, 522, 579, 616
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	3 cut(s)	340, 589, 592
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	4 cut(s)	39, 123, 173, 353
TspRI	CASTG	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.