FvH4_3g30422

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000756
Physical Location & Seq
Forward (+)
23689404 .. 23693969
4566 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30422.t1

Sequence Viewer

Length: 1890 bp
ATGAGGCTAGAATTGGCTGTTTTCTCTGGAGGGGATCCAATAGAGTGGCTGAACAAAGCCGAGCAGTACTTCGATTTTTACCAAATTCCAGAGGATAGGAAGTTGGCATTGGCAACTATGCACCTTGCAGACAAAGCTTCGGATCGTTGGTACACTTTCCGGCATGAATTTCCTCCAACTTGGGCAGGATTAACAAGCTTACTAATGAGGGAGTTCAGTATCTATAACAAAGTTGAGTATCAAGCTGCACTTGCAAGAATGAATCAAACAGGAAGGGTAGAGCAGTACATGGAGGAGTTTACCAGGTTGTCTAGAAGGGCTCCTGGGTTTTCCACTGAATTGTTGGTGTCATTTTTTATTGGAGGCTTAAGAGAGGATATCCGAGGAGATGTGAGGACTCACAACCCCAAGAGCTTGTATGAAGCTTGTGAGTTGGCACGGAGCTACGAAAGTAGAAATGATAGTTACAGGAATTATGCTAAGACTGCAGCGCAGCCCTTGAGGATTACTGGCAGCAGTACCACCACAACACCAACCAAGTCTGTGTCAACTACAACCTATGGGTCCAGGCTGAGTAATAATGCCTCTAGAGTGGAAGCGGCGGGGGCAAACAAAGCTGTGGCGCCCAACAACGCTACCAGAACACTTTCCGACTCTGAATATGCAGCTCGAAGGGCCAGGAACCAGTGCTATTTTTGTGATGCAACTTACACAAGGGGCCATAATTGTAGAAGAAAAGGGCAGCTGATGATTATGGAAATAGTCCCGGATGAAATAGCAAATGTTGACTCAGAGAATATAGGCTATGACACTGAAGGCAGGGAGCTGGTTGAAGTCTCTTCCATAATTGACACAGAAGAACCACTCATTCGATTACAAGTTATGTCTGGTGGCACTTCAGACACAATGCAATTGAAGGGCAAGTTCAACAATAAGATGGGCAGGCTGTTTGTGCCCCAACAAGATAATTGGAGGCAGAAGGTGATTGCAGAATTTCATGAAGGCTATAATGGGGGCCATGCTGGGGTAGCAAGAACTCATAAGAGGGTGTTCAGGTCTTTTGCTTGGCCAGGCATGAAGAAAGATATCAAGACGGTGGTTTCCACTTGCCACATCTGCCAGCAAAACCACTATGAAACAGTCAATCCTCCTGGACTGTTACAACCAAATGTGATACCAGAGAAAGCTTGGACTCAAATCTCTATGGACTTCATTGAAGGTCTTCCCAAGGTGGCTGGAAAAACAGTCATTTTTGTGGTGGTAGACAGGTTCACAAAATATGGTCACTTCATTCCCATATCACACCCATATACAGCTGCTACTGTTGCGCAACACTTTGTTCAGGAAATCTTTCGATTGCATGGAATGCCGGAGTCAATTATCTCTGACAGGGATCCCATCTTTCTTAGCCATTTCTGGGAAGCTTTCTTCACTCTTCAAGGTACAGCTTTGCACAAGAGTTCCTCATATCATCCCCAAAGTGATGGGCAGACTGAAAATTTGAATAGGACCTTGGAACAATATTTACGTTGTGTTGTGGGTGAAAGACCAACATCTTGGCTGACAGCATTGCCATGGGCTGAATTCTGGTACAATTCAGCTCATCACTCCGCCATTGGGATGACGCCTTTTAAGGCATTGTATGGTTATGATGCTCCAGCAGTAAGAGGGTATGAAGCAGGCACAACTGTTGTAGTATCAGTTGATGAAGATTTGCAGACCAGAGATGAGATACTTGCCAGTGTGAAAAGGAACCTACAAAGAGCCACTACCCGGCCGCCATGTGGCTCTGTTCATGTGAGGAGCTGTAGTATAAATCGACAGAGTTGTAAACCCAGTAGGGAAGAGGAATATTATCAGTGCTTTCCAGTCTTTCTTTATTCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

630

Amino Acids

71.53

Weight (kDa)

8.17

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 24 - 151 2.8e-11 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 37 - 125 7.3e-11 Retrotransposon gag protein
Integrase_H2C2 PF17921 323 - 377 4.7e-18 Integrase zinc binding domain
rve PF00665 398 - 492 1.1e-06 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1329
AccB1I GGYRCC 1 cut(s) 622
AccI GTMKAC 1 cut(s) 1263
AciI CCGC 4 cut(s) 599, 602, 1611, 1778
AclWI GGATC 5 cut(s) 29, 42, 150, 1388, 1401
AcoI YGGCCR 2 cut(s) 1067, 1775
AcsI RAATTY 5 cut(s) 84, 167, 992, 1498, 1583
AcuI CTGAAG 2 cut(s) 834, 882
AcyI GRCGYC 2 cut(s) 623, 1625
AfaI GTAC 6 cut(s) 68, 152, 287, 520, 1444, 1592
AfiI CCNNNNNNNGG 5 cut(s) 1024, 1417, 1617, 1773, 1784
AflII CTTAAG 1 cut(s) 367
AgsI TTSAA 6 cut(s) 833, 916, 928, 1217, 1439, 1504
AjnI CCWGG 6 cut(s) 302, 322, 566, 677, 1069, 1150
AjuI GAANNNNNNNTTGG 4 cut(s) 92, 124, 1496, 1528
Alw26I GTCTC 1 cut(s) 841
AlwI GGATC 5 cut(s) 29, 42, 150, 1388, 1401
AoxI GGCC 5 cut(s) 675, 718, 1015, 1067, 1775
ApeKI GCWGC 7 cut(s) 245, 488, 493, 513, 665, 742, 1316
ApoI RAATTY 5 cut(s) 84, 167, 992, 1498, 1583
ArsI GACNNNNNNTTYG 2 cut(s) 1483, 1515
Asp700I GAANNNNTTC 3 cut(s) 646, 1221, 1350
AspLEI GCGC 3 cut(s) 493, 625, 1330
AspS9I GGNCC 5 cut(s) 564, 675, 718, 1015, 1509
AsuC2I CCSGG 2 cut(s) 767, 1774
AsuHPI GGTGA 2 cut(s) 994, 1553
AvaII GGWCC 2 cut(s) 564, 1509
BaeGI GKGCMC 1 cut(s) 957
BalI TGGCCA 1 cut(s) 1069
BamHI GGATCC 2 cut(s) 34, 1393
BanI GGYRCC 1 cut(s) 622
BanII GRGCYC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 1214
BbvI GCAGC 7 cut(s) 232, 500, 505, 525, 677, 754, 1303
BccI CCATC 3 cut(s) 931, 1406, 1478
BciT130I CCWGG 6 cut(s) 304, 324, 568, 679, 1071, 1152
BcnI CCSGG 2 cut(s) 767, 1774
BcoDI GTCTC 1 cut(s) 841
BfaI CTAG 3 cut(s) 8, 312, 588
BfmI CTRYAG 2 cut(s) 486, 1807
BfoI RGCGCY 1 cut(s) 626
BfrI CTTAAG 1 cut(s) 367
BisI GCNGC 9 cut(s) 246, 489, 494, 514, 600, 666, 743, 1317, 1778
BlsI GCNGC 9 cut(s) 247, 490, 495, 515, 601, 667, 744, 1318, 1779
BmcAI AGTACT 1 cut(s) 68
Bme1390I CCNGG 8 cut(s) 304, 324, 568, 679, 767, 1071, 1152, 1774
Bme18I GGWCC 2 cut(s) 564, 1509
BmgT120I GGNCC 5 cut(s) 564, 675, 718, 1015, 1509
BmiI GGNNCC 9 cut(s) 36, 321, 565, 624, 683, 719, 1016, 1395, 1754
BmrFI CCNGG 8 cut(s) 304, 324, 568, 679, 767, 1071, 1152, 1774
BmrI ACTGGG 1 cut(s) 1830
BmsI GCATC 2 cut(s) 691, 1642
BmuI ACTGGG 1 cut(s) 1830
BpiI GAAGAC 1 cut(s) 1214
BpmI CTGGAG 2 cut(s) 48, 1641
BpuEI CTTGAG 1 cut(s) 520
BpuMI CCSGG 2 cut(s) 767, 1774
BsaHI GRCGYC 2 cut(s) 623, 1625
BsaJI CCNNGG 5 cut(s) 323, 382, 1227, 1512, 1574
BsaXI ACNNNNNCTCC 2 cut(s) 1795, 1825
Bsc4I CCNNNNNNNGG 5 cut(s) 1024, 1417, 1617, 1773, 1784
Bse1I ACTGG 5 cut(s) 514, 685, 1740, 1836, 1868
Bse3DI GCAATG 1 cut(s) 1568
BseBI CCWGG 6 cut(s) 304, 324, 568, 679, 1071, 1152
BseDI CCNNGG 5 cut(s) 323, 382, 1227, 1512, 1574
BseGI GGATG 3 cut(s) 775, 1471, 1626
BseLI CCNNNNNNNGG 5 cut(s) 1024, 1417, 1617, 1773, 1784
BseMI GCAATG 1 cut(s) 1568
BseMII CTCAG 2 cut(s) 563, 804
BseNI ACTGG 5 cut(s) 514, 685, 1740, 1836, 1868
BseRI GAGGAG 3 cut(s) 308, 399, 1816
BseSI GKGCMC 1 cut(s) 957
BseX3I CGGCCG 1 cut(s) 1775
BseXI GCAGC 7 cut(s) 232, 500, 505, 525, 677, 754, 1303
BseYI CCCAGC 1 cut(s) 1022
BsgI GTGCAG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 1778
BshFI GGCC 5 cut(s) 677, 720, 1017, 1069, 1777
BshNI GGYRCC 1 cut(s) 622
BsiEI CGRYCG 1 cut(s) 1778
BsiSI CCGG 4 cut(s) 160, 767, 1370, 1774
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 5 cut(s) 1024, 1417, 1617, 1773, 1784
BsmAI GTCTC 1 cut(s) 841
BsmFI GGGAC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 1371
BsnI GGCC 5 cut(s) 677, 720, 1017, 1069, 1777
Bsp1286I GDGCHC 2 cut(s) 322, 957
Bsp143I GATC 3 cut(s) 34, 142, 1393
Bsp19I CCATGG 1 cut(s) 1574
BspACI CCGC 4 cut(s) 599, 602, 1611, 1778
BspANI GGCC 5 cut(s) 677, 720, 1017, 1069, 1777
BspCNI CTCAG 2 cut(s) 564, 803
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 9 cut(s) 36, 321, 565, 624, 683, 719, 1016, 1395, 1754
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 5 cut(s) 29, 42, 150, 1388, 1401
BspT107I GGYRCC 1 cut(s) 622
BspTI CTTAAG 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 1568
BsrI ACTGG 5 cut(s) 514, 685, 1740, 1836, 1868
BssECI CCNNGG 5 cut(s) 323, 382, 1227, 1512, 1574
BssMI GATC 3 cut(s) 34, 142, 1393
BssNI GRCGYC 2 cut(s) 623, 1625
BssT1I CCWWGG 3 cut(s) 1227, 1512, 1574
Bst2UI CCWGG 6 cut(s) 304, 324, 568, 679, 1071, 1152
Bst4CI ACNGT 6 cut(s) 1096, 1141, 1158, 1246, 1324, 1690
Bst6I CTCTTC 3 cut(s) 844, 1440, 1839
BstACI GRCGYC 2 cut(s) 623, 1625
BstAFI CTTAAG 1 cut(s) 367
BstAPI GCANNNNNTGC 1 cut(s) 1366
BstC8I GCNNGC 3 cut(s) 944, 1121, 1681
BstDEI CTNAG 4 cut(s) 480, 572, 790, 1406
BstDSI CCRYGG 1 cut(s) 1574
BstF5I GGATG 3 cut(s) 775, 1471, 1626
BstH2I RGCGCY 1 cut(s) 626
BstHHI GCGC 3 cut(s) 493, 625, 1330
BstKTI GATC 3 cut(s) 37, 145, 1396
BstMAI GTCTC 1 cut(s) 841
BstMBI GATC 3 cut(s) 34, 142, 1393
BstMCI CGRYCG 1 cut(s) 1778
BstNI CCWGG 6 cut(s) 304, 324, 568, 679, 1071, 1152
BstSCI CCNGG 8 cut(s) 302, 322, 566, 677, 765, 1069, 1150, 1772
BstSFI CTRYAG 2 cut(s) 486, 1807
BstSLI GKGCMC 1 cut(s) 957
BstV1I GCAGC 7 cut(s) 232, 500, 505, 525, 677, 754, 1303
BstV2I GAAGAC 1 cut(s) 1214
BstX2I RGATCY 2 cut(s) 34, 1393
BstXI CCANNNNNNTGG 3 cut(s) 45, 1484, 1557
BstYI RGATCY 2 cut(s) 34, 1393
BstZI CGGCCG 1 cut(s) 1775
BsuRI GGCC 5 cut(s) 677, 720, 1017, 1069, 1777
BtgI CCRYGG 1 cut(s) 1574
BtsCI GGATG 3 cut(s) 775, 1471, 1626
BtsIMutI CAGTG 5 cut(s) 333, 692, 810, 1747, 1865
Cac8I GCNNGC 3 cut(s) 944, 1121, 1681
CciI TCATGA 1 cut(s) 997
CfoI GCGC 3 cut(s) 493, 625, 1330
Cfr13I GGNCC 5 cut(s) 564, 675, 718, 1015, 1509
CseI GACGC 1 cut(s) 1633
CsiI ACCWGGT 1 cut(s) 302
Csp6I GTAC 6 cut(s) 67, 151, 286, 519, 1443, 1591
CviAII CATG 9 cut(s) 164, 289, 998, 1019, 1075, 1361, 1575, 1782, 1796
CviQI GTAC 6 cut(s) 67, 151, 286, 519, 1443, 1591
DdeI CTNAG 4 cut(s) 480, 572, 790, 1406
DinI GGCGCC 1 cut(s) 624
DpnI GATC 3 cut(s) 36, 144, 1395
DpnII GATC 3 cut(s) 34, 142, 1393
EaeI YGGCCR 2 cut(s) 1067, 1775
EagI CGGCCG 1 cut(s) 1775
Eam1104I CTCTTC 3 cut(s) 844, 1440, 1839
EarI CTCTTC 3 cut(s) 844, 1440, 1839
EciI GGCGGA 1 cut(s) 1600
EclXI CGGCCG 1 cut(s) 1775
Eco130I CCWWGG 3 cut(s) 1227, 1512, 1574
Eco24I GRGCYC 1 cut(s) 322
Eco32I GATATC 2 cut(s) 379, 1087
Eco47I GGWCC 2 cut(s) 564, 1509
Eco52I CGGCCG 1 cut(s) 1775
Eco57I CTGAAG 2 cut(s) 834, 882
EcoO109I RGGNCCY 1 cut(s) 1509
EcoRI GAATTC 1 cut(s) 1583
EcoRII CCWGG 6 cut(s) 302, 322, 566, 677, 1069, 1150
EcoRV GATATC 2 cut(s) 379, 1087
EcoT14I CCWWGG 3 cut(s) 1227, 1512, 1574
EcoT38I GRGCYC 1 cut(s) 322
EgeI GGCGCC 1 cut(s) 624
EheI GGCGCC 1 cut(s) 624
ErhI CCWWGG 3 cut(s) 1227, 1512, 1574
FaeI CATG 9 cut(s) 167, 292, 1001, 1022, 1078, 1364, 1578, 1785, 1799
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FaqI GGGAC 1 cut(s) 749
FatI CATG 9 cut(s) 163, 288, 997, 1018, 1074, 1360, 1574, 1781, 1795
FauI CCCGC 1 cut(s) 595
FblI GTMKAC 1 cut(s) 1263
Fnu4HI GCNGC 9 cut(s) 246, 489, 494, 514, 600, 666, 743, 1317, 1778
FokI GGATG 3 cut(s) 782, 1458, 1633
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 9 cut(s) 246, 489, 494, 514, 600, 666, 743, 1317, 1778
FspBI CTAG 3 cut(s) 8, 312, 588
FspI TGCGCA 1 cut(s) 1329
GlaI GCGC 3 cut(s) 492, 624, 1329
GluI GCNGC 9 cut(s) 246, 489, 494, 514, 600, 666, 743, 1317, 1778
GsaI CCCAGC 1 cut(s) 1026
GsuI CTGGAG 2 cut(s) 48, 1641
HaeII RGCGCY 1 cut(s) 626
HaeIII GGCC 5 cut(s) 677, 720, 1017, 1069, 1777
HapII CCGG 4 cut(s) 160, 767, 1370, 1774
HgaI GACGC 1 cut(s) 1633
HhaI GCGC 3 cut(s) 493, 625, 1330
Hin1I GRCGYC 2 cut(s) 623, 1625
Hin1II CATG 9 cut(s) 167, 292, 1001, 1022, 1078, 1364, 1578, 1785, 1799
Hin6I GCGC 3 cut(s) 491, 623, 1328
HinP1I GCGC 3 cut(s) 491, 623, 1328
HincII GTYRAC 2 cut(s) 549, 787
HindII GTYRAC 2 cut(s) 549, 787
HindIII AAGCTT 5 cut(s) 135, 196, 423, 1185, 1422
HinfI GANTC 6 cut(s) 262, 397, 653, 788, 1192, 1373
HpaII CCGG 4 cut(s) 160, 767, 1370, 1774
HphI GGTGA 2 cut(s) 994, 1553
Hpy166II GTNNAC 7 cut(s) 153, 300, 549, 787, 1264, 1272, 1832
Hpy188I TCNGA 7 cut(s) 142, 383, 652, 658, 793, 901, 1387
Hpy188III TCNNGA 7 cut(s) 27, 89, 312, 588, 998, 1090, 1343
Hpy8I GTNNAC 7 cut(s) 153, 300, 549, 787, 1264, 1272, 1832
HpyAV CCTTC 8 cut(s) 267, 309, 666, 809, 910, 973, 995, 1211
HpyCH4III ACNGT 6 cut(s) 1096, 1141, 1158, 1246, 1324, 1690
HpyCH4IV ACGT 1 cut(s) 1528
HpyF3I CTNAG 4 cut(s) 480, 572, 790, 1406
HpySE526I ACGT 1 cut(s) 1528
Hsp92I GRCGYC 2 cut(s) 623, 1625
Hsp92II CATG 9 cut(s) 167, 292, 1001, 1022, 1078, 1364, 1578, 1785, 1799
HspAI GCGC 3 cut(s) 491, 623, 1328
KasI GGCGCC 1 cut(s) 622
Kzo9I GATC 3 cut(s) 34, 142, 1393
LmnI GCTCC 5 cut(s) 325, 441, 823, 1660, 1803
Lsp1109I GCAGC 7 cut(s) 232, 500, 505, 525, 677, 754, 1303
LweI GCATC 2 cut(s) 691, 1642
MabI ACCWGGT 1 cut(s) 302
MaeI CTAG 3 cut(s) 8, 312, 588
MaeII ACGT 1 cut(s) 1528
MaeIII GTNAC 3 cut(s) 464, 1158, 1283
MalI GATC 3 cut(s) 36, 144, 1395
MboI GATC 3 cut(s) 34, 142, 1393
MboII GAAGA 9 cut(s) 744, 831, 869, 1090, 1214, 1420, 1427, 1721, 1856
MfeI CAATTG 1 cut(s) 911
MflI RGATCY 2 cut(s) 34, 1393
MhlI GDGCHC 2 cut(s) 322, 957
MlsI TGGCCA 1 cut(s) 1069
MluNI TGGCCA 1 cut(s) 1069
Mly113I GGCGCC 1 cut(s) 623
MlyI GAGTC 5 cut(s) 391, 647, 782, 1186, 1382
MmeI TCCRAC 2 cut(s) 200, 675
Mox20I TGGCCA 1 cut(s) 1069
MroXI GAANNNNTTC 3 cut(s) 646, 1221, 1350
MscI TGGCCA 1 cut(s) 1069
MseI TTAA 3 cut(s) 191, 368, 1632
MslI CAYNNNNRTG 3 cut(s) 1253, 1573, 1619
Msp20I TGGCCA 1 cut(s) 1069
MspA1I CMGCKG 2 cut(s) 745, 1316
MspCI CTTAAG 1 cut(s) 367
MspI CCGG 4 cut(s) 160, 767, 1370, 1774
MspR9I CCNGG 8 cut(s) 304, 324, 568, 679, 767, 1071, 1152, 1774
MunI CAATTG 1 cut(s) 911
Mva1269I GAATGC 1 cut(s) 1371
MvaI CCWGG 6 cut(s) 304, 324, 568, 679, 1071, 1152
NarI GGCGCC 1 cut(s) 623
NciI CCSGG 2 cut(s) 767, 1774
NcoI CCATGG 1 cut(s) 1574
NdeII GATC 3 cut(s) 34, 142, 1393
NlaIII CATG 9 cut(s) 167, 292, 1001, 1022, 1078, 1364, 1578, 1785, 1799
NlaIV GGNNCC 9 cut(s) 36, 321, 565, 624, 683, 719, 1016, 1395, 1754
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 1283
NsbI TGCGCA 1 cut(s) 1329
PagI TCATGA 1 cut(s) 997
PctI GAATGC 1 cut(s) 1371
PdmI GAANNNNTTC 3 cut(s) 646, 1221, 1350
PfeI GAWTC 1 cut(s) 262
PfoI TCCNGGA 2 cut(s) 765, 1150
PkrI GCNGC 9 cut(s) 247, 490, 495, 515, 601, 667, 744, 1318, 1779
PleI GAGTC 5 cut(s) 391, 647, 782, 1186, 1381
PluTI GGCGCC 1 cut(s) 626
PpsI GAGTC 5 cut(s) 391, 647, 782, 1186, 1381
PpuMI RGGWCCY 1 cut(s) 1509
Psp5II RGGWCCY 1 cut(s) 1509
Psp6I CCWGG 6 cut(s) 302, 322, 566, 677, 1069, 1150
PspFI CCCAGC 1 cut(s) 1022
PspGI CCWGG 6 cut(s) 302, 322, 566, 677, 1069, 1150
PspN4I GGNNCC 9 cut(s) 36, 321, 565, 624, 683, 719, 1016, 1395, 1754
PspPI GGNCC 5 cut(s) 564, 675, 718, 1015, 1509
PspPPI RGGWCCY 1 cut(s) 1509
PsrI GAACNNNNNNTAC 2 cut(s) 1509, 1541
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 2 cut(s) 34, 1393
PvuII CAGCTG 2 cut(s) 745, 1316
RsaI GTAC 6 cut(s) 68, 152, 287, 520, 1444, 1592
RsaNI GTAC 6 cut(s) 67, 151, 286, 519, 1443, 1591
RseI CAYNNNNRTG 3 cut(s) 1253, 1573, 1619
SaqAI TTAA 3 cut(s) 191, 368, 1632
SatI GCNGC 9 cut(s) 246, 489, 494, 514, 600, 666, 743, 1317, 1778
Sau3AI GATC 3 cut(s) 34, 142, 1393
Sau96I GGNCC 5 cut(s) 564, 675, 718, 1015, 1509
ScaI AGTACT 1 cut(s) 68
SchI GAGTC 5 cut(s) 391, 647, 782, 1186, 1382
ScrFI CCNGG 8 cut(s) 304, 324, 568, 679, 767, 1071, 1152, 1774
SduI GDGCHC 2 cut(s) 322, 957
SexAI ACCWGGT 1 cut(s) 302
SfaNI GCATC 2 cut(s) 691, 1642
SfcI CTRYAG 2 cut(s) 486, 1807
SfoI GGCGCC 1 cut(s) 624
SinI GGWCC 2 cut(s) 564, 1509
SmiMI CAYNNNNRTG 3 cut(s) 1253, 1573, 1619
SmlI CTYRAG 2 cut(s) 367, 499
SmoI CTYRAG 2 cut(s) 367, 499
SsiI CCGC 4 cut(s) 599, 602, 1611, 1778
SspDI GGCGCC 1 cut(s) 622
SspI AATATT 2 cut(s) 1523, 1853
SspMI CTAG 3 cut(s) 8, 312, 588
StyD4I CCNGG 8 cut(s) 302, 322, 566, 677, 765, 1069, 1150, 1772
StyI CCWWGG 3 cut(s) 1227, 1512, 1574
TaaI ACNGT 6 cut(s) 1096, 1141, 1158, 1246, 1324, 1690
TaiI ACGT 1 cut(s) 1531
TaqI TCGA 5 cut(s) 72, 670, 871, 1354, 1819
TatI WGTACW 2 cut(s) 66, 285
TauI GCSGC 2 cut(s) 602, 1780
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 3 cut(s) 191, 368, 1632
Tru9I TTAA 3 cut(s) 191, 368, 1632
TscAI CASTG 5 cut(s) 340, 692, 817, 1747, 1865
TseFI GTSAC 1 cut(s) 1283
TseI GCWGC 7 cut(s) 245, 488, 493, 513, 665, 742, 1316
Tsp45I GTSAC 1 cut(s) 1283
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 5 cut(s) 340, 692, 817, 1747, 1865
Vha464I CTTAAG 1 cut(s) 367
VpaK11BI GGWCC 2 cut(s) 564, 1509
XapI RAATTY 5 cut(s) 84, 167, 992, 1498, 1583
XbaI TCTAGA 2 cut(s) 311, 587
XcmI CCANNNNNNNNNTGG 2 cut(s) 340, 1185
XmiI GTMKAC 1 cut(s) 1263
XmnI GAANNNNTTC 3 cut(s) 646, 1221, 1350
XspI CTAG 3 cut(s) 8, 312, 588
ZrmI AGTACT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.