Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Reverse (-)

5830152 .. 5830721

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06571.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGACTCCTTTTAAGGCACTTTATGGATATGATGCTCCAGCTGTGAAGAGTTATGCACCAGGTTCAACAGCTAATGCCACAGTGGATGAGCAGTTACAGTCCAGAGATGAGCTGATTGCAAGCTTGAAAAGAAATCTACAGGTGGCTCAATGCATAATGAAAATTTTTTATGACAAGCATCACTCAAACAGGAGCTTTGAAGTGGGAGATTGGGTATATCTTAAGCTACAGCCATATTGCCAACACTCAGTACACAGGAGGAATACTAACAAGCTAGCTCCTCGGTACTATGGTCCATTTTTGGTTGAACAGAAAATTGGCAGTGTGGCTTACAAATTGAAGATGCCAAGTTCTTCTCGAGTGCACCCTGTCTTTCATGTTTCCTTGTTGAAAAAGAAGATTGGGGATGCTGAGGTTGTAGCTACACATTTACCTCCAGACCTTGATCCACATAATCCCAGCTGGTACCCTGCTAAGGTTTTGGATAGAGGTGTGTTCAGGAAAGGAAATGTGCTTGTGACAAAGTGGTTGATCAAATGGCTTGGTGCAGTTGATGAGGAAGCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

190

Amino Acids

21.49

Weight (kDa)

9.5

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 133	1e-22	Tf2-1-like, SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	162
AfaI	GTAC	3 cut(s)	252, 287, 467
AfiI	CCNNNNNNNGG	1 cut(s)	475
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	6 cut(s)	66, 127, 200, 308, 340, 391
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
Alw21I	GWGCWC	1 cut(s)	366
Alw44I	GTGCAC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	357
ApaLI	GTGCAC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	162
Asp718I	GGTACC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	293
AsuNHI	GCTAGC	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	366
BaeI	ACNNNNGTAYC	2 cut(s)	277, 310
BanI	GGYRCC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	411
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	1 cut(s)	531
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	2 cut(s)	137, 227
BfrI	CTTAAG	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	4 cut(s)	22, 187, 333, 397
BmtI	GCTAGC	1 cut(s)	278
BpmI	CTGGAG	2 cut(s)	21, 420
Bpu10I	CCTNAGC	2 cut(s)	411, 474
BsaJI	CCNNGG	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	91, 412
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	2 cut(s)	261, 402
BseRI	GAGGAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	366
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	567
BshNI	GGYRCC	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	445, 531
BspCNI	CTCAG	2 cut(s)	260, 403
BspLI	GGNNCC	1 cut(s)	467
BspOI	GCTAGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	465
BspTI	CTTAAG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	445, 531
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	82, 99
Bst6I	CTCTTC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	121, 276
BstDEI	CTNAG	4 cut(s)	247, 411, 474, 567
BstF5I	GGATG	2 cut(s)	91, 412
BstKTI	GATC	2 cut(s)	448, 534
BstMBI	GATC	2 cut(s)	445, 531
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	2 cut(s)	137, 227
BstSLI	GKGCMC	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	91, 412
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	87, 328
Cac8I	GCNNGC	2 cut(s)	121, 276
Cfr13I	GGNCC	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	251, 286, 466
CviAII	CATG	1 cut(s)	377
CviQI	GTAC	3 cut(s)	251, 286, 466
DdeI	CTNAG	4 cut(s)	247, 411, 474, 567
DpnI	GATC	2 cut(s)	447, 533
DpnII	GATC	2 cut(s)	445, 531
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	155
FaeI	CATG	1 cut(s)	380
FatI	CATG	1 cut(s)	376
FbaI	TGATCA	1 cut(s)	531
FokI	GGATG	2 cut(s)	98, 419
FspBI	CTAG	1 cut(s)	275
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	2 cut(s)	21, 420
Hin1II	CATG	1 cut(s)	380
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	253, 364
Hpy188III	TCNNGA	4 cut(s)	102, 357, 437, 499
Hpy8I	GTNNAC	2 cut(s)	253, 364
HpyCH4III	ACNGT	2 cut(s)	82, 99
HpyCH4V	TGCA	5 cut(s)	56, 119, 153, 364, 548
HpyF3I	CTNAG	4 cut(s)	247, 411, 474, 567
Hsp92II	CATG	1 cut(s)	380
KpnI	GGTACC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	2 cut(s)	445, 531
LmnI	GCTCC	3 cut(s)	40, 192, 283
LweI	GCATC	4 cut(s)	22, 187, 333, 397
MabI	ACCWGGT	1 cut(s)	58
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	93, 517
MalI	GATC	2 cut(s)	447, 533
MboI	GATC	2 cut(s)	445, 531
MboII	GAAGA	4 cut(s)	58, 345, 352, 409
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	3 cut(s)	162, 315, 335
MnlI	CCTC	6 cut(s)	252, 291, 406, 444, 482, 550
Mph1103I	ATGCAT	1 cut(s)	155
MseI	TTAA	2 cut(s)	12, 222
MspA1I	CMGCKG	2 cut(s)	41, 462
MspCI	CTTAAG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	445, 531
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	517
NsiI	ATGCAT	1 cut(s)	155
PaeR7I	CTCGAG	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	293
PvuII	CAGCTG	2 cut(s)	41, 462
RsaI	GTAC	3 cut(s)	252, 287, 467
RsaNI	GTAC	3 cut(s)	251, 286, 466
SaqAI	TTAA	2 cut(s)	12, 222
Sau3AI	GATC	2 cut(s)	445, 531
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	366
SexAI	ACCWGGT	1 cut(s)	58
SfaNI	GCATC	4 cut(s)	22, 187, 333, 397
SfcI	CTRYAG	2 cut(s)	137, 227
Sfr274I	CTCGAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	221, 357
SmoI	CTYRAG	2 cut(s)	221, 357
Sse9I	AATT	3 cut(s)	162, 315, 335
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	82, 99
TaqI	TCGA	1 cut(s)	358
TasI	AATT	3 cut(s)	162, 315, 335
TatI	WGTACW	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	12, 222
Tru9I	TTAA	2 cut(s)	12, 222
TscAI	CASTG	2 cut(s)	87, 328
TseFI	GTSAC	1 cut(s)	517
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	173, 365
TspRI	CASTG	2 cut(s)	87, 328
Vha464I	CTTAAG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	162
XhoI	CTCGAG	1 cut(s)	357
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.