RchiOBHm_Chr4g0399111

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000756
Physical Location & Seq
Forward (+)
16221355 .. 16224424
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37125

Sequence Viewer

Length: 2145 bp
ATGAGTAACTGTGAATTTGGCACTTCCACAGTGGAGTATTTAGGGCACATCATATCTGCTCAGGGAGTAGCAGTTGATCCTGTTAAGATTGAGATCATCAGAAAATGGGCTAAACCAAAAACGTTAAAGGGGTTGCGAGGATTCTTGGGAATGGCTAGTTATTATCGAAAATTTGTGCCAAATTTTGGCATAATTGCTAAACCTTTGACAAATATGTTTAAGAAAGATAGCTTTGTCTGGTCTCCTGAAGCTGAGAGAGCCTTTGAGGAATTGAAACTTTCCATGACTACAACACCTGTGTTGGCCCAGCCAGATTTTGACAAGGAATTTGTCGTAGAGTGCGATGCTTCCTGTTTGGGAATAGGAGTAGTTCTCTCACAAGACAAGCATCCCATAGCTTTCTTGAGTAAGACTCTAGCTCACAAATATTTAGGTTTGTCGATATATGACAAAGAGATGTTAGCAGTGGTTTACGCAGTACAACACTGGAGACCCTACCTTTTAGGGCACCATTTTAAAATTATTACTGATCACAGGACTCTTCAACACTTCTTGGATCAGAGGATTACTACCCCAGCACAGCAAAAATGGTTTTTGAAGCTTATAGGGTATGATTACTCCATTGCTTACAGATCTGGTCCTAATAATGTAGTTCCTGATGCCTTATCTCAACAAGCTGAACTCATGTCTCTAATGGGTGTTTCTACACCAATTTTCAAGTTTATGGAGGACCTTCAATCATTGTGTGAGAATGATGCTGAAACACGAACACTCATAGATGAAGTTCAGCGAAGTCCGGCTACCAGAAAGAACTTCACTTACAGAGATGGGAGGTTGTATTATAAAGGCAGGTTCTATGTTCCTGAAATAGCACAATGGCGAGAAAGAATTATGAAAGAGTTTCATGAGGGGAAAGAAGGGGGTCACTCTGGTTGGCTTAGAACCTACAAGAGAGTATCAAGAAATTTTTTGTGGCTGGGTGTCAAGAAAATGATAAAAATCTATGTCTCTGAATGTATCATCTGTCAGCAGAATCATTATGAAGCAGTTGCACCACCTGGCCTTTTACAACCAAATCCCATTCCTCAGGGAGCATGGTTAGATATCTCACTTGATTTCATTGACGGTTTACCTAACCACGAAGGTATGTCTACTATCTTGGTGGTTGTCGATAGGCTAACCAAATATGGTCACTTTATTGCTCTTTCGCATCCTTACACCGCTAAATCGGTAGCTACAGCATTTGTGCACAATGTTTTCAAATTACATGGAATGCCCAAAACTATGATTACTGACAGGGATCCTATATTTCTAAGTGCCTTTTGGAAGTCTTTCTTTGCTCTACAAGGTACTCAGCTTTGCAAGAGCACTGCATACCACCCACAAACGGAGGGTCAGACAGAGAGTTTAAACAAAGTTTTGGAGCAGTATTTAAGGTGCAGCATCTGTGAAAAAAAGGGGAATCGGCCAGATATGCTTCCTTGGGCGGAATGGTGGTACAACTCTACCTACCATTCAGCCATAAAGATGTCTCCATTCCAAGCCTTATATGGAATATCCCCTCTAACCATTCAGACTTACATGCCAGGTACAACTGCGGTGCATCAAGTAGATTTGCAACTACGAGATAGGGATGAGCGCTTAAAGATACTGCAGCACAACATACAACTTCCTCAAAACAGAATGAAGGTGTACTATGATAAGTACCACACAGAGAGAGAATTTGCAGTTGGCGATATGATCTTTCTTAAGCTACAGCCTTACAGACAAAGCTCAATCCAGAAAAGGAAGTCACAGAAATTAGCACCGAGATATTTTGGTCCTTACCAAGTTACTGCAAAGATTGGAAAGGTTGCCTACAAGCTCCAATTACCAGCAAGTGCTAAGATTCACCCGATGTTCCATGTGTCGTTATTGAAGAAGAAACTTGGCAGTTCTGTCGTTCCTCGCCCACACCTTCCTCCAATATTGGATTCTGATAAATCTCACTGGTATCCTAATAAAATTCTTGACAGGGGTATGTTTAAGAAAGGCAATTCAGCTGAGATCAAATGGTTCGTTCAATGGGAGAACTCTATTGAGGATGATGCTACTTGGATGAACGCTGATGAGTTCATGCATAAGTTCCCAGATTTTAAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

714

Amino Acids

82.5

Weight (kDa)

9.29

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 80 - 174 2.3e-30 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 105 - 204 2.5e-30 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 293 - 346 5.1e-15 Integrase zinc binding domain
SH3_Tf2-1 PF24626 578 - 641 1.5e-23 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
Acc36I ACCTGC 1 cut(s) 840
AccB1I GGYRCC 1 cut(s) 507
AccB7I CCANNNNNTGG 1 cut(s) 185
AccI GTMKAC 1 cut(s) 1151
AciI CCGC 3 cut(s) 1221, 1487, 1598
AclI AACGTT 1 cut(s) 122
AclWI GGATC 4 cut(s) 71, 564, 1295, 1308
AcoI YGGCCR 1 cut(s) 1466
AcsI RAATTY 7 cut(s) 14, 170, 181, 326, 964, 1721, 2004
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 6 cut(s) 480, 1351, 1499, 1591, 1694, 1706
AfeI AGCGCT 1 cut(s) 1640
AfiI CCNNNNNNNGG 2 cut(s) 185, 1387
AflII CTTAAG 1 cut(s) 1748
AgsI TTSAA 8 cut(s) 274, 545, 598, 718, 737, 1261, 1918, 2063
AjnI CCWGG 2 cut(s) 1057, 1585
AjuI GAANNNNNNNTTGG 4 cut(s) 1713, 1745, 1957, 1989
Alw21I GWGCWC 2 cut(s) 1251, 1370
Alw26I GTCTC 5 cut(s) 246, 484, 693, 1012, 1536
Alw44I GTGCAC 1 cut(s) 1247
AlwI GGATC 4 cut(s) 71, 564, 1295, 1308
AlwNI CAGNNNCTG 1 cut(s) 1446
Aor51HI AGCGCT 1 cut(s) 1640
AoxI GGCC 3 cut(s) 303, 1060, 1466
ApaLI GTGCAC 1 cut(s) 1247
ApeKI GCWGC 2 cut(s) 1440, 1654
ApoI RAATTY 7 cut(s) 14, 170, 181, 326, 964, 1721, 2004
ArsI GACNNNNNNTTYG 4 cut(s) 311, 343, 1378, 1410
Asp700I GAANNNNTTC 1 cut(s) 1331
AspLEI GCGC 1 cut(s) 1641
AspS9I GGNCC 4 cut(s) 304, 638, 730, 1820
AsuHPI GGTGA 1 cut(s) 1883
AvaII GGWCC 3 cut(s) 638, 730, 1820
AxyI CCTNAGG 1 cut(s) 1086
BaeGI GKGCMC 3 cut(s) 48, 510, 1251
BamHI GGATCC 1 cut(s) 1300
BanI GGYRCC 1 cut(s) 507
BarI GAAGNNNNNNTAC 2 cut(s) 784, 816
Bbv12I GWGCWC 2 cut(s) 1251, 1370
BbvI GCAGC 2 cut(s) 1452, 1666
BccI CCATC 1 cut(s) 821
BcgI CGANNNNNNTGC 2 cut(s) 1921, 1955
BciT130I CCWGG 2 cut(s) 1059, 1587
BciVI GTATCC 1 cut(s) 2004
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 5 cut(s) 246, 484, 693, 1012, 1536
BfaI CTAG 2 cut(s) 156, 416
BfmI CTRYAG 3 cut(s) 1236, 1652, 1754
BfoI RGCGCY 1 cut(s) 1642
BfrI CTTAAG 1 cut(s) 1748
BfuAI ACCTGC 1 cut(s) 840
BfuI GTATCC 1 cut(s) 2004
BglII AGATCT 1 cut(s) 632
BisI GCNGC 2 cut(s) 1441, 1655
BlsI GCNGC 2 cut(s) 1442, 1656
Bme1390I CCNGG 2 cut(s) 1059, 1587
Bme18I GGWCC 3 cut(s) 638, 730, 1820
BmgT120I GGNCC 4 cut(s) 304, 638, 730, 1820
BmiI GGNNCC 2 cut(s) 509, 1302
BmrFI CCNGG 2 cut(s) 1059, 1587
BmsI GCATC 8 cut(s) 334, 397, 649, 745, 1219, 1452, 1612, 2077
BplI GAGNNNNNCTC 4 cut(s) 357, 389, 397, 429
BpmI CTGGAG 1 cut(s) 508
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 424
BsaBI GATNNNNATC 2 cut(s) 92, 998
BsaI GGTCTC 2 cut(s) 246, 484
BsaJI CCNNGG 1 cut(s) 1481
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 1387
Bse1I ACTGG 2 cut(s) 491, 1994
Bse21I CCTNAGG 1 cut(s) 1086
Bse3DI GCAATG 1 cut(s) 621
Bse8I GATNNNNATC 2 cut(s) 92, 998
BseBI CCWGG 2 cut(s) 1059, 1587
BseDI CCNNGG 1 cut(s) 1481
BseGI GGATG 5 cut(s) 388, 1210, 1639, 2089, 2103
BseJI GATNNNNATC 2 cut(s) 92, 998
BseLI CCNNNNNNNGG 2 cut(s) 185, 1387
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 5 cut(s) 74, 243, 1100, 1367, 2034
BseNI ACTGG 2 cut(s) 491, 1994
BseSI GKGCMC 3 cut(s) 48, 510, 1251
BseXI GCAGC 2 cut(s) 1452, 1666
BseYI CCCAGC 3 cut(s) 306, 574, 976
BsgI GTGCAG 1 cut(s) 1459
BshFI GGCC 3 cut(s) 305, 1062, 1468
BshNI GGYRCC 1 cut(s) 507
BsiHKAI GWGCWC 2 cut(s) 1251, 1370
BsiSI CCGG 1 cut(s) 797
BslI CCNNNNNNNGG 2 cut(s) 185, 1387
BsmAI GTCTC 5 cut(s) 246, 484, 693, 1012, 1536
BsmI GAATGC 1 cut(s) 1278
BsnI GGCC 3 cut(s) 305, 1062, 1468
Bso31I GGTCTC 2 cut(s) 246, 484
Bsp1286I GDGCHC 4 cut(s) 48, 510, 1251, 1370
Bsp143I GATC 8 cut(s) 76, 93, 529, 556, 632, 1300, 1740, 2046
BspACI CCGC 3 cut(s) 1221, 1487, 1598
BspANI GGCC 3 cut(s) 305, 1062, 1468
BspCNI CTCAG 5 cut(s) 73, 244, 1099, 1366, 2035
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 2 cut(s) 509, 1302
BspMAI CTGCAG 1 cut(s) 1656
BspMI ACCTGC 1 cut(s) 840
BspPI GGATC 4 cut(s) 71, 564, 1295, 1308
BspT107I GGYRCC 1 cut(s) 507
BspTI CTTAAG 1 cut(s) 1748
BspTNI GGTCTC 2 cut(s) 246, 484
BsrDI GCAATG 1 cut(s) 621
BsrI ACTGG 2 cut(s) 491, 1994
BssECI CCNNGG 1 cut(s) 1481
BssMI GATC 8 cut(s) 76, 93, 529, 556, 632, 1300, 1740, 2046
BssT1I CCWWGG 1 cut(s) 1481
Bst2UI CCWGG 2 cut(s) 1059, 1587
Bst4CI ACNGT 3 cut(s) 11, 31, 1127
Bst6I CTCTTC 1 cut(s) 546
BstAFI CTTAAG 1 cut(s) 1748
BstDEI CTNAG 8 cut(s) 60, 252, 938, 1086, 1313, 1353, 1884, 2043
BstF5I GGATG 5 cut(s) 388, 1210, 1639, 2089, 2103
BstH2I RGCGCY 1 cut(s) 1642
BstHHI GCGC 1 cut(s) 1641
BstKTI GATC 8 cut(s) 79, 96, 532, 559, 635, 1303, 1743, 2049
BstMAI GTCTC 5 cut(s) 246, 484, 693, 1012, 1536
BstMBI GATC 8 cut(s) 76, 93, 529, 556, 632, 1300, 1740, 2046
BstMWI GCNNNNNNNGC 2 cut(s) 257, 1474
BstNI CCWGG 2 cut(s) 1059, 1587
BstNSI RCATGY 1 cut(s) 1585
BstSCI CCNGG 2 cut(s) 1057, 1585
BstSFI CTRYAG 3 cut(s) 1236, 1652, 1754
BstSLI GKGCMC 3 cut(s) 48, 510, 1251
BstV1I GCAGC 2 cut(s) 1452, 1666
BstX2I RGATCY 2 cut(s) 632, 1300
BstYI RGATCY 2 cut(s) 632, 1300
Bsu36I CCTNAGG 1 cut(s) 1086
BsuI GTATCC 1 cut(s) 2004
BsuRI GGCC 3 cut(s) 305, 1062, 1468
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 5 cut(s) 388, 1210, 1639, 2089, 2103
BtsI GCAGTG 2 cut(s) 471, 1368
BtsIMutI CAGTG 5 cut(s) 36, 471, 484, 1368, 1987
BveI ACCTGC 1 cut(s) 840
CaiI CAGNNNCTG 1 cut(s) 1446
CciI TCATGA 1 cut(s) 904
CfoI GCGC 1 cut(s) 1641
Cfr13I GGNCC 4 cut(s) 304, 638, 730, 1820
Csp6I GTAC 6 cut(s) 479, 1350, 1498, 1590, 1693, 1705
CviAII CATG 8 cut(s) 283, 685, 905, 1095, 1268, 1582, 1904, 2116
CviQI GTAC 6 cut(s) 479, 1350, 1498, 1590, 1693, 1705
DdeI CTNAG 8 cut(s) 60, 252, 938, 1086, 1313, 1353, 1884, 2043
DpnI GATC 8 cut(s) 78, 95, 531, 558, 634, 1302, 1742, 2048
DpnII GATC 8 cut(s) 76, 93, 529, 556, 632, 1300, 1740, 2046
DraI TTTAAA 3 cut(s) 517, 1410, 2137
EaeI YGGCCR 1 cut(s) 1466
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EciI GGCGGA 1 cut(s) 1502
Eco130I CCWWGG 1 cut(s) 1481
Eco31I GGTCTC 2 cut(s) 246, 484
Eco32I GATATC 1 cut(s) 1105
Eco47I GGWCC 3 cut(s) 638, 730, 1820
Eco47III AGCGCT 1 cut(s) 1640
Eco57I CTGAAG 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 1086
EcoO109I RGGNCCY 1 cut(s) 730
EcoRII CCWGG 2 cut(s) 1057, 1585
EcoRV GATATC 1 cut(s) 1105
EcoT14I CCWWGG 1 cut(s) 1481
EcoT22I ATGCAT 1 cut(s) 2121
ErhI CCWWGG 1 cut(s) 1481
FaeI CATG 8 cut(s) 286, 688, 908, 1098, 1271, 1585, 1907, 2119
FalI AAGNNNNNCTT 2 cut(s) 1319, 1351
FatI CATG 8 cut(s) 282, 684, 904, 1094, 1267, 1581, 1903, 2115
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 1151
Fnu4HI GCNGC 2 cut(s) 1441, 1655
FokI GGATG 5 cut(s) 375, 1197, 1646, 2096, 2110
Fsp4HI GCNGC 2 cut(s) 1441, 1655
FspBI CTAG 2 cut(s) 156, 416
GlaI GCGC 1 cut(s) 1640
GluI GCNGC 2 cut(s) 1441, 1655
GsaI CCCAGC 3 cut(s) 310, 578, 980
GsuI CTGGAG 1 cut(s) 508
HaeII RGCGCY 1 cut(s) 1642
HaeIII GGCC 3 cut(s) 305, 1062, 1468
HapII CCGG 1 cut(s) 797
HhaI GCGC 1 cut(s) 1641
Hin1II CATG 8 cut(s) 286, 688, 908, 1098, 1271, 1585, 1907, 2119
Hin6I GCGC 1 cut(s) 1639
HinP1I GCGC 1 cut(s) 1639
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 7 cut(s) 141, 412, 538, 1033, 1462, 1888, 1973
HpaII CCGG 1 cut(s) 797
HphI GGTGA 1 cut(s) 1883
Hpy166II GTNNAC 5 cut(s) 472, 1130, 1152, 1249, 1693
Hpy188I TCNGA 6 cut(s) 101, 561, 1012, 1398, 1575, 1978
Hpy188III TCNNGA 9 cut(s) 245, 403, 656, 863, 905, 960, 985, 1780, 2009
Hpy8I GTNNAC 5 cut(s) 472, 1130, 1152, 1249, 1693
HpyAV CCTTC 5 cut(s) 743, 911, 1136, 1681, 1967
HpyCH4III ACNGT 3 cut(s) 11, 31, 1127
HpyCH4IV ACGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 1474
HpyF3I CTNAG 8 cut(s) 60, 252, 938, 1086, 1313, 1353, 1884, 2043
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 8 cut(s) 286, 688, 908, 1098, 1271, 1585, 1907, 2119
HspAI GCGC 1 cut(s) 1639
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 8 cut(s) 76, 93, 529, 556, 632, 1300, 1740, 2046
LmnI GCTCC 3 cut(s) 1091, 1423, 1869
Lsp1109I GCAGC 2 cut(s) 1452, 1666
LweI GCATC 8 cut(s) 334, 397, 649, 745, 1219, 1452, 1612, 2077
MaeI CTAG 2 cut(s) 156, 416
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 5 cut(s) 5, 923, 1190, 1791, 1831
MalI GATC 8 cut(s) 78, 95, 531, 558, 634, 1302, 1742, 2048
MboI GATC 8 cut(s) 76, 93, 529, 556, 632, 1300, 1740, 2046
MboII GAAGA 3 cut(s) 533, 1930, 1933
MflI RGATCY 2 cut(s) 632, 1300
MhlI GDGCHC 4 cut(s) 48, 510, 1251, 1370
MlyI GAGTC 2 cut(s) 406, 532
Mph1103I ATGCAT 1 cut(s) 2121
MroXI GAANNNNTTC 1 cut(s) 1331
MslI CAYNNNNRTG 1 cut(s) 1526
MspA1I CMGCKG 1 cut(s) 2042
MspCI CTTAAG 1 cut(s) 1748
MspI CCGG 1 cut(s) 797
MspR9I CCNGG 2 cut(s) 1059, 1587
MssI GTTTAAAC 1 cut(s) 1410
Mva1269I GAATGC 1 cut(s) 1278
MvaI CCWGG 2 cut(s) 1059, 1587
MwoI GCNNNNNNNGC 2 cut(s) 257, 1474
NdeII GATC 8 cut(s) 76, 93, 529, 556, 632, 1300, 1740, 2046
NlaIII CATG 8 cut(s) 286, 688, 908, 1098, 1271, 1585, 1907, 2119
NlaIV GGNNCC 2 cut(s) 509, 1302
NmuCI GTSAC 3 cut(s) 923, 1190, 1791
NsiI ATGCAT 1 cut(s) 2121
NspI RCATGY 1 cut(s) 1585
PagI TCATGA 1 cut(s) 904
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 1 cut(s) 1278
PdmI GAANNNNTTC 1 cut(s) 1331
PfeI GAWTC 5 cut(s) 141, 1033, 1462, 1888, 1973
PflMI CCANNNNNTGG 1 cut(s) 185
PkrI GCNGC 2 cut(s) 1442, 1656
PleI GAGTC 2 cut(s) 406, 532
PmeI GTTTAAAC 1 cut(s) 1410
PpsI GAGTC 2 cut(s) 406, 532
PpuMI RGGWCCY 1 cut(s) 730
PsiI TTATAA 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 730
Psp6I CCWGG 2 cut(s) 1057, 1585
PspFI CCCAGC 3 cut(s) 306, 574, 976
PspGI CCWGG 2 cut(s) 1057, 1585
PspN4I GGNNCC 2 cut(s) 509, 1302
PspPI GGNCC 4 cut(s) 304, 638, 730, 1820
PspPPI RGGWCCY 1 cut(s) 730
PsrI GAACNNNNNNTAC 2 cut(s) 803, 835
PstI CTGCAG 1 cut(s) 1656
PstNI CAGNNNCTG 1 cut(s) 1446
PsuI RGATCY 2 cut(s) 632, 1300
PvuII CAGCTG 1 cut(s) 2042
RsaI GTAC 6 cut(s) 480, 1351, 1499, 1591, 1694, 1706
RsaNI GTAC 6 cut(s) 479, 1350, 1498, 1590, 1693, 1705
RseI CAYNNNNRTG 1 cut(s) 1526
SatI GCNGC 2 cut(s) 1441, 1655
Sau3AI GATC 8 cut(s) 76, 93, 529, 556, 632, 1300, 1740, 2046
Sau96I GGNCC 4 cut(s) 304, 638, 730, 1820
SchI GAGTC 2 cut(s) 406, 532
ScrFI CCNGG 2 cut(s) 1059, 1587
SduI GDGCHC 4 cut(s) 48, 510, 1251, 1370
SfaNI GCATC 8 cut(s) 334, 397, 649, 745, 1219, 1452, 1612, 2077
SfcI CTRYAG 3 cut(s) 1236, 1652, 1754
SinI GGWCC 3 cut(s) 638, 730, 1820
SmiMI CAYNNNNRTG 1 cut(s) 1526
SmlI CTYRAG 2 cut(s) 403, 1748
SmoI CTYRAG 2 cut(s) 403, 1748
SsiI CCGC 3 cut(s) 1221, 1487, 1598
SspI AATATT 2 cut(s) 428, 1968
SspMI CTAG 2 cut(s) 156, 416
StyD4I CCNGG 2 cut(s) 1057, 1585
StyI CCWWGG 1 cut(s) 1481
TaaI ACNGT 3 cut(s) 11, 31, 1127
TaiI ACGT 1 cut(s) 125
TaqI TCGA 3 cut(s) 166, 440, 1170
TatI WGTACW 2 cut(s) 478, 1692
TfiI GAWTC 5 cut(s) 141, 1033, 1462, 1888, 1973
TscAI CASTG 5 cut(s) 36, 471, 491, 1375, 1994
TseFI GTSAC 3 cut(s) 923, 1190, 1791
TseI GCWGC 2 cut(s) 1440, 1654
Tsp45I GTSAC 3 cut(s) 923, 1190, 1791
TspDTI ATGAA 8 cut(s) 795, 893, 908, 1056, 1108, 1700, 2104, 2114
TspGWI ACGGA 1 cut(s) 1403
TspRI CASTG 5 cut(s) 36, 471, 491, 1375, 1994
Van91I CCANNNNNTGG 1 cut(s) 185
Vha464I CTTAAG 1 cut(s) 1748
VneI GTGCAC 1 cut(s) 1247
VpaK11BI GGWCC 3 cut(s) 638, 730, 1820
XapI RAATTY 7 cut(s) 14, 170, 181, 326, 964, 1721, 2004
XceI RCATGY 1 cut(s) 1585
XcmI CCANNNNNNNNNTGG 1 cut(s) 1547
XmiI GTMKAC 1 cut(s) 1151
XmnI GAANNNNTTC 1 cut(s) 1331
XspI CTAG 2 cut(s) 156, 416
Zsp2I ATGCAT 1 cut(s) 2121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.