Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000756

Physical Location & Seq

Genomic Coordinates Reverse (-)

34366841 .. 34367488

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACTCCTTTTCAGGCACTCTATGGCTATCCACCACCCTCAGTGATACCCTATCTACCGGGTTCAACATCAGTTGTTGCTGTGGATCAACAACTCAGAAGCAGGGATACACTTCTAGCTGCACTTAAGCGGAATCTTCAAGTGGCTCAGTCCAGAATGAAAGGTTTTTATGACAAAAAGCATACTGAAAGGAAGTTTGAAGTGGGTGATCAAGTCTATCTCAAGCTCCAGCCTTACAGACAACTCTCTGTACACAAAGATGAGTTCCATAAACTATCCCAACGGTACTACGGACCATTTGAGGTTCTGGAAAGAATCGGGACGGTGGCCTACAGATTGAAGCTTCCTCCATATGCAAGAATTCACAACGTCTTTCATGTTTCTTTGCTTAAAAAGAAATTGGGAGATAATGCTACAGTAGAAGCACTGCTGCCTCATGTGAGTGATTCTGCTAATCCTAAGTGGGAGCCGATGGCAGTACTGGACAGAAGAGTTTTCAAAAAGAAGGGGGTTGCTGGCACTCAGTGGCTAGTTCAATGGCTTGGGACCTCTCCGGAAGAGTCCACATGGGAAGATGCTGAGCATATACTAATGAGATTCCCTCGTTTTGACCCTGATAAAGAGCACTGCAGCCCCACTCCCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

215

Amino Acids

24.85

Weight (kDa)

9.48

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	9e-24	Tf2-1-like, SH3 domain
Integrase_p58_C	PF22938	98 - 132	1.8e-06	Integrase p58, C-terminal domain
Chromo	PF00385	156 - 201	1.4e-08	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00155
fragaria_vesca	FvH4_2g19791 FvH4_3g30422 FvH4_3g30933 FvH4_3g30934 FvH4_3g31635 FvH4_4g05353 FvH4_4g06571 FvH4_4g06572 FvH4_4g06573 FvH4_4g08682 FvH4_4g12501 FvH4_5g33111 FvH4_6g20641 FvH4_6g22262 FvH4_6g24731 FvH4_6g52751
pyrus_communis	pycom10g18150
rosa_chinensis	RchiOBHm_Chr1g0321671 RchiOBHm_Chr2g0126521 RchiOBHm_Chr3g0451511 RchiOBHm_Chr3g0473251 RchiOBHm_Chr4g0397431 RchiOBHm_Chr4g0399101 RchiOBHm_Chr4g0399111 RchiOBHm_Chr4g0414841 RchiOBHm_Chr5g0021471 RchiOBHm_Chr5g0021481 RchiOBHm_Chr5g0075951 RchiOBHm_Chr5g0078051 RchiOBHm_Chr6g0286161 RchiOBHm_Chr6g0286171 RchiOBHm_Chr7g0185771
rosa_laevigata	RLG00000010238 RLG00000030464
rosa_roxburghii	Rroxscaffold_1G00071870 Rroxscaffold_2G00080460 Rroxscaffold_2G00085610 Rroxscaffold_2G00093090 Rroxscaffold_2G00134320 Rroxscaffold_3G00238340 Rroxscaffold_3G00255160 Rroxscaffold_4G00280870 Rroxscaffold_6G00402930 Rroxscaffold_6G00428840 Rroxscaffold_7G00197340
rosa_samantha	Rh3CG229300 Rh7BG226300
rosa_wichuraiana	Rw0G002510 Rw0G003200 Rw0G021820 Rw0G023810 Rw1G014640 Rw2G004390 Rw2G007910 Rw2G018470 Rw2G037630 Rw2G044860 Rw2G053420 Rw3G002230 Rw3G028200 Rw4G004770 Rw4G006640 Rw5G005440 Rw5G024120 Rw5G028050 Rw5G028410 Rw6G004650 Rw6G019400 Rw7G026910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	553
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	360
AdeI	CACNNNGTG	1 cut(s)	525
AfaI	GTAC	3 cut(s)	252, 287, 480
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	6 cut(s)	66, 140, 200, 340, 499, 536
AluBI	AGCT	3 cut(s)	119, 226, 343
AluI	AGCT	3 cut(s)	119, 226, 343
Alw21I	GWGCWC	1 cut(s)	627
AlwI	GGATC	1 cut(s)	93
Aor13HI	TCCGGA	1 cut(s)	553
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	119, 430, 630
ApoI	RAATTY	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	293, 546
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	293, 546
BarI	GAAGNNNNNNTAC	2 cut(s)	91, 123
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	106, 417, 642
BccI	CCATC	1 cut(s)	466
BciVI	GTATCC	1 cut(s)	100
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	3 cut(s)	116, 530, 646
BfmI	CTRYAG	3 cut(s)	331, 414, 628
BfrI	CTTAAG	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	3 cut(s)	120, 431, 631
BlpI	GCTNAGC	1 cut(s)	579
BlsI	GCNGC	3 cut(s)	121, 432, 632
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	293, 546
BmgT120I	GGNCC	2 cut(s)	293, 546
BmiI	GGNNCC	2 cut(s)	468, 547
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	565
BplI	GAGNNNNNCTC	2 cut(s)	586, 618
BpmI	CTGGAG	1 cut(s)	212
Bpu1102I	GCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	553
Bse1I	ACTGG	1 cut(s)	486
BseAI	TCCGGA	1 cut(s)	553
BseMII	CTCAG	5 cut(s)	54, 109, 161, 536, 570
BseNI	ACTGG	1 cut(s)	486
BseXI	GCAGC	3 cut(s)	106, 417, 642
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	59, 554
BslFI	GGGAC	2 cut(s)	334, 559
BsmFI	GGGAC	2 cut(s)	334, 559
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp13I	TCCGGA	1 cut(s)	553
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	85, 208
Bsp1720I	GCTNAGC	1 cut(s)	579
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	5 cut(s)	53, 108, 160, 535, 571
BspEI	TCCGGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	468, 547
BspMAI	CTGCAG	1 cut(s)	632
BspPI	GGATC	1 cut(s)	93
BspTI	CTTAAG	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	85, 208
Bst4CI	ACNGT	3 cut(s)	285, 325, 418
Bst6I	CTCTTC	2 cut(s)	484, 552
BstAFI	CTTAAG	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	6 cut(s)	40, 95, 147, 459, 522, 579
BstKTI	GATC	2 cut(s)	88, 211
BstMBI	GATC	2 cut(s)	85, 208
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	3 cut(s)	331, 414, 628
BstV1I	GCAGC	3 cut(s)	106, 417, 642
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	329
BtsI	GCAGTG	2 cut(s)	425, 625
BtsIMutI	CAGTG	4 cut(s)	48, 425, 530, 625
Cac8I	GCNNGC	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	293, 546
Csp6I	GTAC	3 cut(s)	251, 286, 479
CviAII	CATG	3 cut(s)	377, 437, 567
CviQI	GTAC	3 cut(s)	251, 286, 479
DdeI	CTNAG	6 cut(s)	40, 95, 147, 459, 522, 579
DpnI	GATC	2 cut(s)	87, 210
DpnII	GATC	2 cut(s)	85, 208
DraIII	CACNNNGTG	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	484, 552
EarI	CTCTTC	2 cut(s)	484, 552
Eco47I	GGWCC	2 cut(s)	293, 546
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRI	GAATTC	1 cut(s)	360
FaeI	CATG	3 cut(s)	380, 440, 570
FaqI	GGGAC	2 cut(s)	334, 559
FatI	CATG	3 cut(s)	376, 436, 566
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	120, 431, 631
Fsp4HI	GCNGC	3 cut(s)	120, 431, 631
FspBI	CTAG	3 cut(s)	116, 530, 646
GluI	GCNGC	3 cut(s)	120, 431, 631
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	2 cut(s)	59, 554
Hin1II	CATG	3 cut(s)	380, 440, 570
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	6 cut(s)	4, 133, 315, 446, 560, 597
HpaII	CCGG	2 cut(s)	59, 554
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	253, 564
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	4 cut(s)	153, 308, 319, 554
Hpy8I	GTNNAC	2 cut(s)	253, 564
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	3 cut(s)	285, 325, 418
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	122, 356, 630
HpyF3I	CTNAG	6 cut(s)	40, 95, 147, 459, 522, 579
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	3 cut(s)	380, 440, 570
Kpn2I	TCCGGA	1 cut(s)	553
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	85, 208
LmnI	GCTCC	2 cut(s)	231, 466
LpnPI	CCDG	9 cut(s)	72, 88, 166, 242, 293, 467, 501, 567, 627
Lsp1109I	GCAGC	3 cut(s)	106, 417, 642
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	3 cut(s)	116, 530, 646
MaeII	ACGT	1 cut(s)	369
MalI	GATC	2 cut(s)	87, 210
MboI	GATC	2 cut(s)	85, 208
MboII	GAAGA	4 cut(s)	128, 501, 569, 584
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	2 cut(s)	360, 398
MlyI	GAGTC	1 cut(s)	569
MnlI	CCTC	6 cut(s)	49, 295, 357, 444, 559, 612
MroI	TCCGGA	1 cut(s)	553
MseI	TTAA	2 cut(s)	126, 390
MslI	CAYNNNNRTG	2 cut(s)	258, 441
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	2 cut(s)	59, 554
MspR9I	CCNGG	1 cut(s)	60
NciI	CCSGG	1 cut(s)	60
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	2 cut(s)	85, 208
NlaIII	CATG	3 cut(s)	380, 440, 570
NlaIV	GGNNCC	2 cut(s)	468, 547
PfeI	GAWTC	4 cut(s)	133, 315, 446, 597
PkrI	GCNGC	3 cut(s)	121, 432, 632
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PpuMI	RGGWCCY	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	468, 547
PspPI	GGNCC	2 cut(s)	293, 546
PspPPI	RGGWCCY	1 cut(s)	546
PstI	CTGCAG	1 cut(s)	632
RsaI	GTAC	3 cut(s)	252, 287, 480
RsaNI	GTAC	3 cut(s)	251, 286, 479
RseI	CAYNNNNRTG	2 cut(s)	258, 441
SaqAI	TTAA	2 cut(s)	126, 390
SatI	GCNGC	3 cut(s)	120, 431, 631
Sau3AI	GATC	2 cut(s)	85, 208
Sau96I	GGNCC	2 cut(s)	293, 546
ScaI	AGTACT	1 cut(s)	480
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	627
SetI	ASST	7 cut(s)	121, 166, 228, 306, 345, 372, 551
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	3 cut(s)	331, 414, 628
SinI	GGWCC	2 cut(s)	293, 546
SmiMI	CAYNNNNRTG	2 cut(s)	258, 441
SmlI	CTYRAG	2 cut(s)	125, 221
SmoI	CTYRAG	2 cut(s)	125, 221
Sse9I	AATT	2 cut(s)	360, 398
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	3 cut(s)	116, 530, 646
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	285, 325, 418
TaiI	ACGT	1 cut(s)	372
TasI	AATT	2 cut(s)	360, 398
TatI	WGTACW	2 cut(s)	250, 478
TfiI	GAWTC	4 cut(s)	133, 315, 446, 597
Tru1I	TTAA	2 cut(s)	126, 390
Tru9I	TTAA	2 cut(s)	126, 390
TscAI	CASTG	4 cut(s)	48, 432, 530, 632
TseI	GCWGC	3 cut(s)	119, 430, 630
TspDTI	ATGAA	2 cut(s)	173, 365
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	4 cut(s)	48, 432, 530, 632
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	293, 546
XapI	RAATTY	1 cut(s)	360
XspI	CTAG	3 cut(s)	116, 530, 646
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.