transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| gag-asp_proteas | PF13975 | 5 - 92 | 8.3e-08 | gag-polyprotein putative aspartyl protease |
| Asp_protease_2 | PF13650 | 7 - 88 | 5.1e-06 | Aspartyl protease |
| RVP_2 | PF08284 | 10 - 92 | 1.2e-07 | Retroviral aspartyl protease |
| RVT_1 | PF00078 | 243 - 403 | 1.7e-39 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 465 - 559 | 1.7e-30 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 490 - 589 | 7.9e-31 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 677 - 731 | 6.6e-20 | Integrase zinc binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2048 |
| AarI | CACCTGC | 1 cut(s) | 1116 |
| Acc36I | ACCTGC | 1 cut(s) | 1116 |
| Acc65I | GGTACC | 1 cut(s) | 2504 |
| AccB1I | GGYRCC | 4 cut(s) | 56, 1807, 2169, 2504 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 239 |
| AciI | CCGC | 1 cut(s) | 1111 |
| AclWI | GGATC | 2 cut(s) | 1226, 2450 |
| AcoI | YGGCCR | 1 cut(s) | 1262 |
| AcsI | RAATTY | 9 cut(s) | 15, 298, 320, 953, 1336, 2007, 2155, 2409, 2496 |
| AcuI | CTGAAG | 1 cut(s) | 2316 |
| AfaI | GTAC | 4 cut(s) | 42, 745, 2205, 2506 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 239 |
| AflII | CTTAAG | 1 cut(s) | 1373 |
| AgeI | ACCGGT | 1 cut(s) | 618 |
| AjnI | CCWGG | 3 cut(s) | 293, 2131, 2212 |
| Alw26I | GTCTC | 4 cut(s) | 299, 705, 903, 1947 |
| AlwI | GGATC | 2 cut(s) | 1226, 2450 |
| Ama87I | CYCGRG | 1 cut(s) | 1182 |
| AoxI | GGCC | 8 cut(s) | 611, 689, 943, 1262, 1646, 1917, 2065, 2129 |
| ApeKI | GCWGC | 4 cut(s) | 263, 518, 782, 1102 |
| ApoI | RAATTY | 9 cut(s) | 15, 298, 320, 953, 1336, 2007, 2155, 2409, 2496 |
| AseI | ATTAAT | 1 cut(s) | 603 |
| AsiGI | ACCGGT | 1 cut(s) | 618 |
| Asp718I | GGTACC | 1 cut(s) | 2504 |
| AspS9I | GGNCC | 3 cut(s) | 276, 1574, 2253 |
| AsuHPI | GGTGA | 5 cut(s) | 283, 368, 878, 1714, 2050 |
| AsuNHI | GCTAGC | 1 cut(s) | 1306 |
| AvaI | CYCGRG | 1 cut(s) | 1182 |
| AvaII | GGWCC | 3 cut(s) | 276, 1574, 2253 |
| AxyI | CCTNAGG | 1 cut(s) | 2588 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1839, 1872 |
| BalI | TGGCCA | 1 cut(s) | 1264 |
| BanI | GGYRCC | 4 cut(s) | 56, 1807, 2169, 2504 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2333, 2365 |
| BbvCI | CCTCAGC | 1 cut(s) | 595 |
| BbvI | GCAGC | 4 cut(s) | 250, 530, 769, 1089 |
| BccI | CCATC | 5 cut(s) | 734, 1532, 1738, 2057, 2540 |
| BciT130I | CCWGG | 3 cut(s) | 295, 2133, 2214 |
| BciVI | GTATCC | 3 cut(s) | 502, 633, 1867 |
| BclI | TGATCA | 1 cut(s) | 1684 |
| BcoDI | GTCTC | 4 cut(s) | 299, 705, 903, 1947 |
| BfaI | CTAG | 6 cut(s) | 693, 1115, 1307, 1571, 1658, 1824 |
| BfmI | CTRYAG | 1 cut(s) | 1075 |
| BfrI | CTTAAG | 1 cut(s) | 1373 |
| BfuAI | ACCTGC | 1 cut(s) | 1116 |
| BfuI | GTATCC | 3 cut(s) | 502, 633, 1867 |
| BglII | AGATCT | 1 cut(s) | 875 |
| BisI | GCNGC | 5 cut(s) | 264, 519, 783, 1103, 1112 |
| BlsI | GCNGC | 5 cut(s) | 265, 520, 784, 1104, 1113 |
| Bme1390I | CCNGG | 3 cut(s) | 295, 2133, 2214 |
| Bme18I | GGWCC | 3 cut(s) | 276, 1574, 2253 |
| BmeT110I | CYCGRG | 1 cut(s) | 1182 |
| BmgT120I | GGNCC | 3 cut(s) | 276, 1574, 2253 |
| BmiI | GGNNCC | 5 cut(s) | 58, 847, 1809, 2171, 2506 |
| BmrFI | CCNGG | 3 cut(s) | 295, 2133, 2214 |
| BmsI | GCATC | 3 cut(s) | 1141, 1411, 2269 |
| BmtI | GCTAGC | 1 cut(s) | 1310 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1552, 1584 |
| BpmI | CTGGAG | 3 cut(s) | 699, 1872, 2196 |
| Bpu10I | CCTNAGC | 1 cut(s) | 595 |
| BpuEI | CTTGAG | 6 cut(s) | 892, 1042, 1054, 1130, 1579, 1929 |
| BsaBI | GATNNNNATC | 2 cut(s) | 801, 2454 |
| BsaJI | CCNNGG | 3 cut(s) | 279, 2265, 2358 |
| BsaWI | WCCGGW | 1 cut(s) | 618 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 532, 562, 742, 772, 970, 1000, 1212, 1242 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 239 |
| Bse118I | RCCGGY | 1 cut(s) | 618 |
| Bse1I | ACTGG | 5 cut(s) | 144, 716, 870, 1855, 2459 |
| Bse21I | CCTNAGG | 1 cut(s) | 2588 |
| Bse3DI | GCAATG | 2 cut(s) | 1548, 2160 |
| Bse8I | GATNNNNATC | 2 cut(s) | 801, 2454 |
| BseBI | CCWGG | 3 cut(s) | 295, 2133, 2214 |
| BseDI | CCNNGG | 3 cut(s) | 279, 2265, 2358 |
| BseGI | GGATG | 4 cut(s) | 43, 484, 1730, 2533 |
| BseJI | GATNNNNATC | 2 cut(s) | 801, 2454 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 239 |
| BseMI | GCAATG | 2 cut(s) | 1548, 2160 |
| BseMII | CTCAG | 5 cut(s) | 609, 954, 2424, 2482, 2547 |
| BseNI | ACTGG | 5 cut(s) | 144, 716, 870, 1855, 2459 |
| BseRI | GAGGAG | 4 cut(s) | 482, 487, 700, 2371 |
| BseXI | GCAGC | 4 cut(s) | 250, 530, 769, 1089 |
| BseYI | CCCAGC | 1 cut(s) | 1860 |
| BsgI | GTGCAG | 2 cut(s) | 680, 1088 |
| BshFI | GGCC | 8 cut(s) | 613, 691, 945, 1264, 1648, 1919, 2067, 2131 |
| BshNI | GGYRCC | 4 cut(s) | 56, 1807, 2169, 2504 |
| BshTI | ACCGGT | 1 cut(s) | 618 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1182 |
| BsiSI | CCGG | 1 cut(s) | 619 |
| BslFI | GGGAC | 3 cut(s) | 128, 432, 1065 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 239 |
| BsmAI | GTCTC | 4 cut(s) | 299, 705, 903, 1947 |
| BsmBI | CGTCTC | 1 cut(s) | 705 |
| BsmFI | GGGAC | 3 cut(s) | 128, 432, 1065 |
| BsmI | GAATGC | 2 cut(s) | 903, 2433 |
| BsnI | GGCC | 8 cut(s) | 613, 691, 945, 1264, 1648, 1919, 2067, 2131 |
| BsoBI | CYCGRG | 1 cut(s) | 1182 |
| Bsp143I | GATC | 7 cut(s) | 875, 1071, 1231, 1440, 1684, 1719, 2455 |
| Bsp19I | CCATGG | 2 cut(s) | 2265, 2358 |
| BspACI | CCGC | 1 cut(s) | 1111 |
| BspANI | GGCC | 8 cut(s) | 613, 691, 945, 1264, 1648, 1919, 2067, 2131 |
| BspCNI | CTCAG | 5 cut(s) | 608, 953, 2425, 2481, 2548 |
| BspHI | TCATGA | 2 cut(s) | 1008, 2059 |
| BspLI | GGNNCC | 5 cut(s) | 58, 847, 1809, 2171, 2506 |
| BspMI | ACCTGC | 1 cut(s) | 1116 |
| BspOI | GCTAGC | 1 cut(s) | 1310 |
| BspPI | GGATC | 2 cut(s) | 1226, 2450 |
| BspT107I | GGYRCC | 4 cut(s) | 56, 1807, 2169, 2504 |
| BspTI | CTTAAG | 1 cut(s) | 1373 |
| BsrDI | GCAATG | 2 cut(s) | 1548, 2160 |
| BsrFI | RCCGGY | 1 cut(s) | 618 |
| BsrI | ACTGG | 5 cut(s) | 144, 716, 870, 1855, 2459 |
| BssAI | RCCGGY | 1 cut(s) | 618 |
| BssECI | CCNNGG | 3 cut(s) | 279, 2265, 2358 |
| BssMI | GATC | 7 cut(s) | 875, 1071, 1231, 1440, 1684, 1719, 2455 |
| BssT1I | CCWWGG | 3 cut(s) | 279, 2265, 2358 |
| Bst2UI | CCWGG | 3 cut(s) | 295, 2133, 2214 |
| Bst4CI | ACNGT | 8 cut(s) | 181, 379, 790, 1079, 1621, 1941, 2203, 2308 |
| BstAFI | CTTAAG | 1 cut(s) | 1373 |
| BstC8I | GCNNGC | 6 cut(s) | 1308, 1312, 1900, 2082, 2086, 2129 |
| BstDSI | CCRYGG | 2 cut(s) | 2265, 2358 |
| BstF5I | GGATG | 4 cut(s) | 43, 484, 1730, 2533 |
| BstKTI | GATC | 7 cut(s) | 878, 1074, 1234, 1443, 1687, 1722, 2458 |
| BstMAI | GTCTC | 4 cut(s) | 299, 705, 903, 1947 |
| BstMBI | GATC | 7 cut(s) | 875, 1071, 1231, 1440, 1684, 1719, 2455 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 149, 1108, 1111, 1421, 1654, 1814, 2090, 2178 |
| BstNI | CCWGG | 3 cut(s) | 295, 2133, 2214 |
| BstNSI | RCATGY | 2 cut(s) | 1372, 2084 |
| BstSCI | CCNGG | 3 cut(s) | 293, 2131, 2212 |
| BstSFI | CTRYAG | 1 cut(s) | 1075 |
| BstV1I | GCAGC | 4 cut(s) | 250, 530, 769, 1089 |
| BstX2I | RGATCY | 2 cut(s) | 875, 2455 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2266 |
| BstYI | RGATCY | 2 cut(s) | 875, 2455 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2588 |
| BsuI | GTATCC | 3 cut(s) | 502, 633, 1867 |
| BsuRI | GGCC | 8 cut(s) | 613, 691, 945, 1264, 1648, 1919, 2067, 2131 |
| BtgI | CCRYGG | 2 cut(s) | 2265, 2358 |
| BtsCI | GGATG | 4 cut(s) | 43, 484, 1730, 2533 |
| BtsIMutI | CAGTG | 3 cut(s) | 39, 151, 186 |
| BveI | ACCTGC | 1 cut(s) | 1116 |
| Cac8I | GCNNGC | 6 cut(s) | 1308, 1312, 1900, 2082, 2086, 2129 |
| CciI | TCATGA | 2 cut(s) | 1008, 2059 |
| Cfr10I | RCCGGY | 1 cut(s) | 618 |
| Cfr13I | GGNCC | 3 cut(s) | 276, 1574, 2253 |
| CseI | GACGC | 2 cut(s) | 687, 1823 |
| Csp6I | GTAC | 4 cut(s) | 41, 744, 2204, 2505 |
| CspAI | ACCGGT | 1 cut(s) | 618 |
| CviQI | GTAC | 4 cut(s) | 41, 744, 2204, 2505 |
| DpnI | GATC | 7 cut(s) | 877, 1073, 1233, 1442, 1686, 1721, 2457 |
| DpnII | GATC | 7 cut(s) | 875, 1071, 1231, 1440, 1684, 1719, 2455 |
| DraI | TTTAAA | 2 cut(s) | 22, 2416 |
| EaeI | YGGCCR | 1 cut(s) | 1262 |
| Eco130I | CCWWGG | 3 cut(s) | 279, 2265, 2358 |
| Eco147I | AGGCCT | 2 cut(s) | 691, 1648 |
| Eco32I | GATATC | 1 cut(s) | 289 |
| Eco47I | GGWCC | 3 cut(s) | 276, 1574, 2253 |
| Eco57I | CTGAAG | 1 cut(s) | 2316 |
| Eco81I | CCTNAGG | 1 cut(s) | 2588 |
| Eco88I | CYCGRG | 1 cut(s) | 1182 |
| EcoO109I | RGGNCCY | 2 cut(s) | 276, 1574 |
| EcoRII | CCWGG | 3 cut(s) | 293, 2131, 2212 |
| EcoRV | GATATC | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 3 cut(s) | 279, 2265, 2358 |
| EcoT22I | ATGCAT | 1 cut(s) | 903 |
| ErhI | CCWWGG | 3 cut(s) | 279, 2265, 2358 |
| Esp3I | CGTCTC | 1 cut(s) | 705 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1370, 1402 |
| FaqI | GGGAC | 3 cut(s) | 128, 432, 1065 |
| FbaI | TGATCA | 1 cut(s) | 1684 |
| Fnu4HI | GCNGC | 5 cut(s) | 264, 519, 783, 1103, 1112 |
| FokI | GGATG | 4 cut(s) | 50, 471, 1717, 2520 |
| Fsp4HI | GCNGC | 5 cut(s) | 264, 519, 783, 1103, 1112 |
| FspBI | CTAG | 6 cut(s) | 693, 1115, 1307, 1571, 1658, 1824 |
| GluI | GCNGC | 5 cut(s) | 264, 519, 783, 1103, 1112 |
| GsaI | CCCAGC | 1 cut(s) | 1864 |
| GsuI | CTGGAG | 3 cut(s) | 699, 1872, 2196 |
| HaeIII | GGCC | 8 cut(s) | 613, 691, 945, 1264, 1648, 1919, 2067, 2131 |
| HapII | CCGG | 1 cut(s) | 619 |
| HgaI | GACGC | 2 cut(s) | 687, 1823 |
| HindIII | AAGCTT | 1 cut(s) | 1896 |
| HpaII | CCGG | 1 cut(s) | 619 |
| HphI | GGTGA | 5 cut(s) | 283, 368, 878, 1714, 2050 |
| Hpy166II | GTNNAC | 2 cut(s) | 2054, 2256 |
| Hpy188I | TCNGA | 7 cut(s) | 636, 1408, 1507, 1936, 2296, 2449, 2545 |
| Hpy8I | GTNNAC | 2 cut(s) | 2054, 2256 |
| HpyAV | CCTTC | 5 cut(s) | 211, 457, 999, 1372, 2291 |
| HpyCH4III | ACNGT | 8 cut(s) | 181, 379, 790, 1079, 1621, 1941, 2203, 2308 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 149, 1108, 1111, 1421, 1654, 1814, 2090, 2178 |
| KpnI | GGTACC | 1 cut(s) | 2508 |
| Ksp22I | TGATCA | 1 cut(s) | 1684 |
| Kzo9I | GATC | 7 cut(s) | 875, 1071, 1231, 1440, 1684, 1719, 2455 |
| LmnI | GCTCC | 7 cut(s) | 149, 260, 559, 845, 991, 1520, 1956 |
| Lsp1109I | GCAGC | 4 cut(s) | 250, 530, 769, 1089 |
| LweI | GCATC | 3 cut(s) | 1141, 1411, 2269 |
| MaeI | CTAG | 6 cut(s) | 693, 1115, 1307, 1571, 1658, 1824 |
| MaeIII | GTNAC | 6 cut(s) | 175, 326, 356, 771, 1094, 1879 |
| MalI | GATC | 7 cut(s) | 877, 1073, 1233, 1442, 1686, 1721, 2457 |
| MboI | GATC | 7 cut(s) | 875, 1071, 1231, 1440, 1684, 1719, 2455 |
| MboII | GAAGA | 3 cut(s) | 325, 1729, 2053 |
| MflI | RGATCY | 2 cut(s) | 875, 2455 |
| MlsI | TGGCCA | 1 cut(s) | 1264 |
| MluNI | TGGCCA | 1 cut(s) | 1264 |
| MlyI | GAGTC | 5 cut(s) | 44, 359, 1102, 2492, 2566 |
| MmeI | TCCRAC | 1 cut(s) | 2012 |
| Mox20I | TGGCCA | 1 cut(s) | 1264 |
| Mph1103I | ATGCAT | 1 cut(s) | 903 |
| MscI | TGGCCA | 1 cut(s) | 1264 |
| MslI | CAYNNNNRTG | 3 cut(s) | 605, 2264, 2357 |
| Msp20I | TGGCCA | 1 cut(s) | 1264 |
| MspA1I | CMGCKG | 2 cut(s) | 521, 2127 |
| MspCI | CTTAAG | 1 cut(s) | 1373 |
| MspI | CCGG | 1 cut(s) | 619 |
| MspR9I | CCNGG | 3 cut(s) | 295, 2133, 2214 |
| Mva1269I | GAATGC | 2 cut(s) | 903, 2433 |
| MvaI | CCWGG | 3 cut(s) | 295, 2133, 2214 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 149, 1108, 1111, 1421, 1654, 1814, 2090, 2178 |
| NcoI | CCATGG | 2 cut(s) | 2265, 2358 |
| NdeII | GATC | 7 cut(s) | 875, 1071, 1231, 1440, 1684, 1719, 2455 |
| NheI | GCTAGC | 1 cut(s) | 1306 |
| NlaIV | GGNNCC | 5 cut(s) | 58, 847, 1809, 2171, 2506 |
| NmuCI | GTSAC | 4 cut(s) | 356, 771, 1094, 1879 |
| NsiI | ATGCAT | 1 cut(s) | 903 |
| NspI | RCATGY | 2 cut(s) | 1372, 2084 |
| PaeI | GCATGC | 1 cut(s) | 2084 |
| PaeR7I | CTCGAG | 1 cut(s) | 1182 |
| PagI | TCATGA | 2 cut(s) | 1008, 2059 |
| PaqCI | CACCTGC | 1 cut(s) | 1116 |
| PceI | AGGCCT | 2 cut(s) | 691, 1648 |
| PctI | GAATGC | 2 cut(s) | 903, 2433 |
| PfeI | GAWTC | 5 cut(s) | 436, 1296, 1403, 2188, 2560 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 239 |
| PfoI | TCCNGGA | 1 cut(s) | 2212 |
| PinAI | ACCGGT | 1 cut(s) | 618 |
| PkrI | GCNGC | 5 cut(s) | 265, 520, 784, 1104, 1113 |
| PleI | GAGTC | 5 cut(s) | 44, 359, 1101, 2491, 2566 |
| PpsI | GAGTC | 5 cut(s) | 44, 359, 1101, 2491, 2566 |
| PpuMI | RGGWCCY | 2 cut(s) | 276, 1574 |
| PshBI | ATTAAT | 1 cut(s) | 603 |
| PsiI | TTATAA | 1 cut(s) | 2048 |
| Psp5II | RGGWCCY | 2 cut(s) | 276, 1574 |
| Psp6I | CCWGG | 3 cut(s) | 293, 2131, 2212 |
| PspFI | CCCAGC | 1 cut(s) | 1860 |
| PspGI | CCWGG | 3 cut(s) | 293, 2131, 2212 |
| PspN4I | GGNNCC | 5 cut(s) | 58, 847, 1809, 2171, 2506 |
| PspPI | GGNCC | 3 cut(s) | 276, 1574, 2253 |
| PspPPI | RGGWCCY | 2 cut(s) | 276, 1574 |
| PsuI | RGATCY | 2 cut(s) | 875, 2455 |
| PvuII | CAGCTG | 2 cut(s) | 521, 2127 |
| RsaI | GTAC | 4 cut(s) | 42, 745, 2205, 2506 |
| RsaNI | GTAC | 4 cut(s) | 41, 744, 2204, 2505 |
| RseI | CAYNNNNRTG | 3 cut(s) | 605, 2264, 2357 |
| SatI | GCNGC | 5 cut(s) | 264, 519, 783, 1103, 1112 |
| Sau3AI | GATC | 7 cut(s) | 875, 1071, 1231, 1440, 1684, 1719, 2455 |
| Sau96I | GGNCC | 3 cut(s) | 276, 1574, 2253 |
| SchI | GAGTC | 5 cut(s) | 44, 359, 1102, 2492, 2566 |
| ScrFI | CCNGG | 3 cut(s) | 295, 2133, 2214 |
| SfaNI | GCATC | 3 cut(s) | 1141, 1411, 2269 |
| SfcI | CTRYAG | 1 cut(s) | 1075 |
| Sfr274I | CTCGAG | 1 cut(s) | 1182 |
| SinI | GGWCC | 3 cut(s) | 276, 1574, 2253 |
| SlaI | CTCGAG | 1 cut(s) | 1182 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 605, 2264, 2357 |
| SmlI | CTYRAG | 9 cut(s) | 871, 1021, 1033, 1145, 1182, 1373, 1558, 1944, 2576 |
| SmoI | CTYRAG | 9 cut(s) | 871, 1021, 1033, 1145, 1182, 1373, 1558, 1944, 2576 |
| SphI | GCATGC | 1 cut(s) | 2084 |
| SseBI | AGGCCT | 2 cut(s) | 691, 1648 |
| SsiI | CCGC | 1 cut(s) | 1111 |
| SspI | AATATT | 1 cut(s) | 110 |
| SspMI | CTAG | 6 cut(s) | 693, 1115, 1307, 1571, 1658, 1824 |
| StuI | AGGCCT | 2 cut(s) | 691, 1648 |
| StyD4I | CCNGG | 3 cut(s) | 293, 2131, 2212 |
| StyI | CCWWGG | 3 cut(s) | 279, 2265, 2358 |
| TaaI | ACNGT | 8 cut(s) | 181, 379, 790, 1079, 1621, 1941, 2203, 2308 |
| TaqI | TCGA | 2 cut(s) | 1183, 2025 |
| TatI | WGTACW | 2 cut(s) | 40, 2203 |
| TauI | GCSGC | 1 cut(s) | 1114 |
| TfiI | GAWTC | 5 cut(s) | 436, 1296, 1403, 2188, 2560 |
| TscAI | CASTG | 3 cut(s) | 39, 151, 186 |
| TseFI | GTSAC | 4 cut(s) | 356, 771, 1094, 1879 |
| TseI | GCWGC | 4 cut(s) | 263, 518, 782, 1102 |
| Tsp45I | GTSAC | 4 cut(s) | 356, 771, 1094, 1879 |
| TspGWI | ACGGA | 1 cut(s) | 1898 |
| TspRI | CASTG | 3 cut(s) | 39, 151, 186 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 239 |
| Vha464I | CTTAAG | 1 cut(s) | 1373 |
| VpaK11BI | GGWCC | 3 cut(s) | 276, 1574, 2253 |
| VspI | ATTAAT | 1 cut(s) | 603 |
| XapI | RAATTY | 9 cut(s) | 15, 298, 320, 953, 1336, 2007, 2155, 2409, 2496 |
| XceI | RCATGY | 2 cut(s) | 1372, 2084 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2263 |
| XhoI | CTCGAG | 1 cut(s) | 1182 |
| XspI | CTAG | 6 cut(s) | 693, 1115, 1307, 1571, 1658, 1824 |
| Zsp2I | ATGCAT | 1 cut(s) | 903 |