Rroxscaffold_3G00255160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000756
Physical Location & Seq
Forward (+)
49426381 .. 49438250
11870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255160.1

Sequence Viewer

Length: 291 bp
ATGGATGCCACTGGGGACTCTAGAGATTTTGACGACGATATTTATTATTGTTGTCCTTGTTACATAAATCAGAGGAACAACAACAACAACAACAACAATAATCGGAATAGAGGCGGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTGGTGAAATTGTTGTTAATAATTCGAGTTTGAATCTAAAGAAGAAATTGTGCAACCCGAACAACAAGGACAAGCCGACCGAGATTACAAAGTCAAGGCTAAAATTCCTTTCTTTTCGGGCAACTTGGGGGTGGAAGATTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.1

Weight (kDa)

9.55

Isoelectric Point (pI)

23.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 248
AcvI CACGTG 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 178
AoxI GGCC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 161
BanII GRGCYC 1 cut(s) 142
BbrPI CACGTG 1 cut(s) 146
BfaI CTAG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 141
BsrI ACTGG 1 cut(s) 16
BstBAI YACGTR 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 128
BstF5I GGATG 1 cut(s) 10
BstMCI CGRYCG 1 cut(s) 225
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 128
CviJI RGCY 4 cut(s) 126, 140, 220, 244
CviKI_1 RGCY 4 cut(s) 126, 140, 220, 244
DraIII CACNNNGTG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 142
Eco72I CACGTG 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 142
FaiI YATR 1 cut(s) 65
FaqI GGGAC 1 cut(s) 29
FauI CCCGC 1 cut(s) 107
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 142
FspBI CTAG 1 cut(s) 21
HaeIII GGCC 1 cut(s) 126
HinfI GANTC 2 cut(s) 17, 178
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 2 cut(s) 72, 105
Hpy188III TCNNGA 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 145
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 1 cut(s) 140
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 59
MboII GAAGA 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 4 cut(s) 153, 166, 191, 248
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 3 cut(s) 66, 104, 116
MseI TTAA 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 178
PleI GAGTC 1 cut(s) 11
PmaCI CACGTG 1 cut(s) 146
PmlI CACGTG 1 cut(s) 146
PpsI GAGTC 1 cut(s) 11
Ppu21I YACGTR 1 cut(s) 146
PspCI CACGTG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 162
SchI GAGTC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 142
SetI ASST 1 cut(s) 148
Sse9I AATT 4 cut(s) 153, 166, 191, 248
SsiI CCGC 1 cut(s) 114
SspMI CTAG 1 cut(s) 21
TaiI ACGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 170
TaqII GACCGA 1 cut(s) 239
TasI AATT 4 cut(s) 153, 166, 191, 248
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 16
TspRI CASTG 1 cut(s) 16
XapI RAATTY 1 cut(s) 248
XbaI TCTAGA 1 cut(s) 20
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.