RchiOBHm_Chr7g0185771

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000756
Physical Location & Seq
Forward (+)
5852913 .. 5853429
517 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16581

Sequence Viewer

Length: 462 bp
ATGAAGGGGCTCTATGATAAAAAGCACACAGAGAGAGAATTTCAAGCTGGAGATTGGGCTTATCTTAAACTCCAGCCTTATAGGCAACACTCTATGCCTGCAAGTGTGTTTCACAAGCTATCTACCAAATATTATGGACCCTTCCAAGTGCTTGAGAAAATTGGAGAGGTGGCCTATAAACTGCAGCTTCCACCTTCAGCTAAAATACATAATGTATTCCATGTGTCACTTTTGAAGAAGAAGGTTGGTAATTCTGTTGTGGTGGAATCTCAATTACTCGCCATCCATGATACTTCCAATCCAAGGTGGGCACCAGAAGCTATTCTACAAACTAGAATGGTGAAAAGACGTGGTGAGGCTGCCACACAATGGCTCATACAGTGGTTTGGGACCTCCCCTGACGAGGCAACATGGGAATTTGCTCACGACATTATCCAGAGGTACCCAGACTTCCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

153

Amino Acids

17.86

Weight (kDa)

9.4

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 17 - 81 5.4e-23 Tf2-1-like, SH3 domain
Integrase_p58_C PF22938 46 - 80 8.1e-09 Integrase p58, C-terminal domain
Chromo PF00385 103 - 148 1.3e-06 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 441
AccB1I GGYRCC 2 cut(s) 310, 441
AccB7I CCANNNNNTGG 1 cut(s) 369
AcsI RAATTY 2 cut(s) 38, 416
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 3 cut(s) 303, 369, 403
AgsI TTSAA 2 cut(s) 44, 235
AjiI CACGTC 1 cut(s) 350
AluBI AGCT 5 cut(s) 47, 118, 187, 200, 320
AluI AGCT 5 cut(s) 47, 118, 187, 200, 320
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 184, 359
ApoI RAATTY 2 cut(s) 38, 416
Asp700I GAANNNNTTC 1 cut(s) 321
Asp718I GGTACC 1 cut(s) 441
AspS9I GGNCC 2 cut(s) 137, 390
AsuHPI GGTGA 2 cut(s) 352, 365
AvaII GGWCC 2 cut(s) 137, 390
BaeGI GKGCMC 1 cut(s) 313
BanI GGYRCC 2 cut(s) 310, 441
BanII GRGCYC 1 cut(s) 12
BarI GAAGNNNNNNTAC 3 cut(s) 309, 341, 434
BbvI GCAGC 2 cut(s) 196, 346
BccI CCATC 1 cut(s) 290
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 182
BglI GCCNNNNNGGC 1 cut(s) 82
BisI GCNGC 2 cut(s) 185, 360
BlsI GCNGC 2 cut(s) 186, 361
Bme18I GGWCC 2 cut(s) 137, 390
BmgBI CACGTC 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 137, 390
BmiI GGNNCC 4 cut(s) 139, 312, 391, 443
BpmI CTGGAG 2 cut(s) 56, 69
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 302
Bsc4I CCNNNNNNNGG 3 cut(s) 303, 369, 403
Bse1I ACTGG 1 cut(s) 454
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 303, 369, 403
BseNI ACTGG 1 cut(s) 454
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 2 cut(s) 196, 346
BshFI GGCC 1 cut(s) 173
BshNI GGYRCC 2 cut(s) 310, 441
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 3 cut(s) 303, 369, 403
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 12, 313
BspANI GGCC 1 cut(s) 173
BspLI GGNNCC 4 cut(s) 139, 312, 391, 443
BspMAI CTGCAG 1 cut(s) 186
BspT107I GGYRCC 2 cut(s) 310, 441
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 282
BstMWI GCNNNNNNNGC 2 cut(s) 82, 317
BstSFI CTRYAG 1 cut(s) 182
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 196, 346
BsuRI GGCC 1 cut(s) 173
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 386
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 137, 390
Csp6I GTAC 1 cut(s) 442
CviAII CATG 3 cut(s) 221, 287, 411
CviQI GTAC 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 137, 390
Eco57I CTGAAG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 3 cut(s) 224, 290, 414
FaqI GGGAC 1 cut(s) 403
FatI CATG 3 cut(s) 220, 286, 410
Fnu4HI GCNGC 2 cut(s) 185, 360
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 185, 360
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 185, 360
GsuI CTGGAG 2 cut(s) 56, 69
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 3 cut(s) 224, 290, 414
HinfI GANTC 1 cut(s) 266
HphI GGTGA 2 cut(s) 352, 365
Hpy188III TCNNGA 2 cut(s) 425, 436
HpyAV CCTTC 3 cut(s) 151, 204, 235
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 2 cut(s) 101, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 317
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 3 cut(s) 224, 290, 414
KpnI GGTACC 1 cut(s) 445
LpnPI CCDG 6 cut(s) 33, 86, 111, 327, 411, 449
Lsp1109I GCAGC 2 cut(s) 196, 346
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 1 cut(s) 225
MboII GAAGA 2 cut(s) 247, 250
MhlI GDGCHC 2 cut(s) 12, 313
MluCI AATT 5 cut(s) 38, 159, 250, 272, 416
MnlI CCTC 5 cut(s) 160, 349, 397, 403, 432
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 82, 317
NlaIII CATG 3 cut(s) 224, 290, 414
NlaIV GGNNCC 4 cut(s) 139, 312, 391, 443
NmuCI GTSAC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 369
PkrI GCNGC 2 cut(s) 186, 361
PpuMI RGGWCCY 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 390
PspN4I GGNNCC 4 cut(s) 139, 312, 391, 443
PspPI GGNCC 2 cut(s) 137, 390
PspPPI RGGWCCY 1 cut(s) 390
PstI CTGCAG 1 cut(s) 186
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 185, 360
Sau96I GGNCC 2 cut(s) 137, 390
SduI GDGCHC 2 cut(s) 12, 313
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 2 cut(s) 137, 390
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 5 cut(s) 38, 159, 250, 272, 416
SspI AATATT 1 cut(s) 131
SspMI CTAG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 381
TaiI ACGT 1 cut(s) 352
TasI AATT 5 cut(s) 38, 159, 250, 272, 416
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 386
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 2 cut(s) 184, 359
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 369
VpaK11BI GGWCC 2 cut(s) 137, 390
XapI RAATTY 2 cut(s) 38, 416
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.