transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 853 - 925 | 3.3e-12 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1046 - 1128 | 1.3e-22 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1071 - 1128 | 2.2e-11 | RNase H-like domain found in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 77 |
| Acc36I | ACCTGC | 1 cut(s) | 3044 |
| Acc65I | GGTACC | 1 cut(s) | 1747 |
| AccB1I | GGYRCC | 3 cut(s) | 1288, 1747, 3285 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 905, 2063 |
| AccI | GTMKAC | 1 cut(s) | 3010 |
| AciI | CCGC | 7 cut(s) | 360, 629, 1177, 1214, 1382, 1715, 2738 |
| AclWI | GGATC | 9 cut(s) | 328, 495, 508, 953, 1013, 1529, 2632, 2969, 2982 |
| AcoI | YGGCCR | 2 cut(s) | 165, 2773 |
| AcsI | RAATTY | 8 cut(s) | 128, 964, 1058, 1136, 1181, 1839, 2030, 3079 |
| AcuI | CTGAAG | 3 cut(s) | 2184, 2743, 3231 |
| AfaI | GTAC | 9 cut(s) | 1052, 1147, 1243, 1256, 1684, 1749, 1860, 2001, 3378 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 905, 1155, 2063, 2647 |
| AflII | CTTAAG | 3 cut(s) | 2012, 2096, 2888 |
| AflIII | ACRYGT | 2 cut(s) | 2838, 2944 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2704 |
| AhlI | ACTAGT | 1 cut(s) | 398 |
| AjnI | CCWGG | 3 cut(s) | 1148, 1291, 2384 |
| Alw21I | GWGCWC | 2 cut(s) | 243, 267 |
| Alw26I | GTCTC | 6 cut(s) | 110, 579, 865, 1724, 2103, 2177 |
| AlwI | GGATC | 9 cut(s) | 328, 495, 508, 953, 1013, 1529, 2632, 2969, 2982 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2497 |
| Ama87I | CYCGRG | 2 cut(s) | 86, 712 |
| AoxI | GGCC | 9 cut(s) | 165, 888, 1215, 1432, 1669, 2271, 2773, 3098, 3177 |
| ApeKI | GCWGC | 5 cut(s) | 2160, 2211, 2612, 3155, 3329 |
| ApoI | RAATTY | 8 cut(s) | 128, 964, 1058, 1136, 1181, 1839, 2030, 3079 |
| AseI | ATTAAT | 1 cut(s) | 1676 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1692 |
| Asp718I | GGTACC | 1 cut(s) | 1747 |
| AspLEI | GCGC | 2 cut(s) | 58, 106 |
| AspS9I | GGNCC | 5 cut(s) | 480, 686, 716, 1669, 3178 |
| AsuC2I | CCSGG | 2 cut(s) | 248, 1647 |
| AsuHPI | GGTGA | 8 cut(s) | 367, 499, 569, 845, 2301, 2329, 2535, 2708 |
| AvaI | CYCGRG | 2 cut(s) | 86, 712 |
| AvaII | GGWCC | 3 cut(s) | 480, 686, 716 |
| AxyI | CCTNAGG | 2 cut(s) | 1305, 1477 |
| BaeGI | GKGCMC | 3 cut(s) | 1291, 1653, 3288 |
| BalI | TGGCCA | 2 cut(s) | 167, 2775 |
| BamHI | GGATCC | 2 cut(s) | 500, 2974 |
| BanI | GGYRCC | 3 cut(s) | 1288, 1747, 3285 |
| BanII | GRGCYC | 2 cut(s) | 267, 2534 |
| BbsI | GAAGAC | 3 cut(s) | 1536, 2474, 2787 |
| Bbv12I | GWGCWC | 2 cut(s) | 243, 267 |
| BbvCI | CCTCAGC | 1 cut(s) | 2193 |
| BbvI | GCAGC | 5 cut(s) | 2147, 2198, 2624, 3167, 3316 |
| BceAI | ACGGC | 1 cut(s) | 32 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 89, 123, 3224, 3258 |
| BciT130I | CCWGG | 3 cut(s) | 1150, 1293, 2386 |
| BciVI | GTATCC | 1 cut(s) | 2643 |
| BclI | TGATCA | 1 cut(s) | 735 |
| BcnI | CCSGG | 2 cut(s) | 248, 1647 |
| BcoDI | GTCTC | 6 cut(s) | 110, 579, 865, 1724, 2103, 2177 |
| BcuI | ACTAGT | 1 cut(s) | 398 |
| BfmI | CTRYAG | 5 cut(s) | 1657, 2817, 2925, 3061, 3090 |
| BfoI | RGCGCY | 1 cut(s) | 59 |
| BfrI | CTTAAG | 3 cut(s) | 2012, 2096, 2888 |
| BfuAI | ACCTGC | 1 cut(s) | 3044 |
| BfuI | GTATCC | 1 cut(s) | 2643 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 53 |
| BglII | AGATCT | 1 cut(s) | 386 |
| BisI | GCNGC | 6 cut(s) | 1215, 2161, 2212, 2613, 3156, 3330 |
| BlsI | GCNGC | 6 cut(s) | 1216, 2162, 2213, 2614, 3157, 3331 |
| BmcAI | AGTACT | 1 cut(s) | 1052 |
| Bme1390I | CCNGG | 5 cut(s) | 248, 1150, 1293, 1647, 2386 |
| Bme18I | GGWCC | 3 cut(s) | 480, 686, 716 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2704 |
| BmeT110I | CYCGRG | 2 cut(s) | 86, 712 |
| BmgT120I | GGNCC | 5 cut(s) | 480, 686, 716, 1669, 3178 |
| BmiI | GGNNCC | 9 cut(s) | 252, 502, 717, 1290, 1670, 1749, 1921, 2976, 3287 |
| BmrFI | CCNGG | 5 cut(s) | 248, 1150, 1293, 1647, 2386 |
| BmrI | ACTGGG | 1 cut(s) | 3188 |
| BmsI | GCATC | 8 cut(s) | 87, 115, 124, 129, 627, 886, 1573, 3232 |
| BmuI | ACTGGG | 1 cut(s) | 3188 |
| BpiI | GAAGAC | 3 cut(s) | 1536, 2474, 2787 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 107, 139, 1560, 1592, 3255, 3287 |
| BpmI | CTGGAG | 3 cut(s) | 281, 360, 2364 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2193, 2958 |
| BpuEI | CTTGAG | 3 cut(s) | 2219, 2722, 2810 |
| BpuMI | CCSGG | 2 cut(s) | 248, 1647 |
| BsaBI | GATNNNNATC | 2 cut(s) | 319, 2631 |
| BsaI | GGTCTC | 1 cut(s) | 110 |
| BsaJI | CCNNGG | 8 cut(s) | 162, 483, 1218, 1517, 1646, 1923, 2671, 2828 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1008, 1038, 2100, 2130, 2572, 2602, 2955, 2985 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 905, 1155, 2063, 2647 |
| Bse118I | RCCGGY | 1 cut(s) | 334 |
| Bse1I | ACTGG | 6 cut(s) | 377, 1939, 2057, 2546, 3054, 3194 |
| Bse21I | CCTNAGG | 2 cut(s) | 1305, 1477 |
| Bse3DI | GCAATG | 3 cut(s) | 1636, 2226, 3291 |
| Bse8I | GATNNNNATC | 2 cut(s) | 319, 2631 |
| BseBI | CCWGG | 3 cut(s) | 1150, 1293, 2386 |
| BseDI | CCNNGG | 8 cut(s) | 162, 483, 1218, 1517, 1646, 1923, 2671, 2828 |
| BseJI | GATNNNNATC | 2 cut(s) | 319, 2631 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 905, 1155, 2063, 2647 |
| BseMI | GCAATG | 3 cut(s) | 1636, 2226, 3291 |
| BseNI | ACTGG | 6 cut(s) | 377, 1939, 2057, 2546, 3054, 3194 |
| BseRI | GAGGAG | 8 cut(s) | 22, 128, 1029, 1506, 1742, 1815, 2007, 2530 |
| BseSI | GKGCMC | 3 cut(s) | 1291, 1653, 3288 |
| BseXI | GCAGC | 5 cut(s) | 2147, 2198, 2624, 3167, 3316 |
| BsgI | GTGCAG | 2 cut(s) | 2146, 2510 |
| Bsh1285I | CGRYCG | 2 cut(s) | 339, 1382 |
| BshFI | GGCC | 9 cut(s) | 167, 890, 1217, 1434, 1671, 2273, 2775, 3100, 3179 |
| BshNI | GGYRCC | 3 cut(s) | 1288, 1747, 3285 |
| BsiEI | CGRYCG | 2 cut(s) | 339, 1382 |
| BsiHKAI | GWGCWC | 2 cut(s) | 243, 267 |
| BsiHKCI | CYCGRG | 2 cut(s) | 86, 712 |
| BsiSI | CCGG | 4 cut(s) | 248, 299, 335, 1646 |
| BslFI | GGGAC | 4 cut(s) | 729, 2955, 3060, 3100 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 905, 1155, 2063, 2647 |
| BsmAI | GTCTC | 6 cut(s) | 110, 579, 865, 1724, 2103, 2177 |
| BsmFI | GGGAC | 4 cut(s) | 729, 2955, 3060, 3100 |
| BsnI | GGCC | 9 cut(s) | 167, 890, 1217, 1434, 1671, 2273, 2775, 3100, 3179 |
| Bso31I | GGTCTC | 1 cut(s) | 110 |
| BsoBI | CYCGRG | 2 cut(s) | 86, 712 |
| Bsp1286I | GDGCHC | 6 cut(s) | 243, 267, 1291, 1653, 2534, 3288 |
| Bsp19I | CCATGG | 3 cut(s) | 162, 483, 2671 |
| BspACI | CCGC | 7 cut(s) | 360, 629, 1177, 1214, 1382, 1715, 2738 |
| BspANI | GGCC | 9 cut(s) | 167, 890, 1217, 1434, 1671, 2273, 2775, 3100, 3179 |
| BspHI | TCATGA | 2 cut(s) | 2133, 3183 |
| BspLI | GGNNCC | 9 cut(s) | 252, 502, 717, 1290, 1670, 1749, 1921, 2976, 3287 |
| BspMAI | CTGCAG | 1 cut(s) | 1661 |
| BspMI | ACCTGC | 1 cut(s) | 3044 |
| BspPI | GGATC | 9 cut(s) | 328, 495, 508, 953, 1013, 1529, 2632, 2969, 2982 |
| BspQI | GCTCTTC | 2 cut(s) | 1597, 2683 |
| BspT107I | GGYRCC | 3 cut(s) | 1288, 1747, 3285 |
| BspTI | CTTAAG | 3 cut(s) | 2012, 2096, 2888 |
| BspTNI | GGTCTC | 1 cut(s) | 110 |
| BsrDI | GCAATG | 3 cut(s) | 1636, 2226, 3291 |
| BsrFI | RCCGGY | 1 cut(s) | 334 |
| BsrI | ACTGG | 6 cut(s) | 377, 1939, 2057, 2546, 3054, 3194 |
| BssAI | RCCGGY | 1 cut(s) | 334 |
| BssECI | CCNNGG | 8 cut(s) | 162, 483, 1218, 1517, 1646, 1923, 2671, 2828 |
| BssT1I | CCWWGG | 6 cut(s) | 162, 483, 1218, 1923, 2671, 2828 |
| Bst2UI | CCWGG | 3 cut(s) | 1150, 1293, 2386 |
| Bst4CI | ACNGT | 7 cut(s) | 310, 421, 1246, 1266, 2152, 2620, 2929 |
| Bst6I | CTCTTC | 4 cut(s) | 1338, 1597, 1713, 2683 |
| BstAFI | CTTAAG | 3 cut(s) | 2012, 2096, 2888 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2497 |
| BstC8I | GCNNGC | 5 cut(s) | 102, 144, 1365, 1404, 3177 |
| BstDSI | CCRYGG | 3 cut(s) | 162, 483, 2671 |
| BstEII | GGTNACC | 1 cut(s) | 355 |
| BstH2I | RGCGCY | 1 cut(s) | 59 |
| BstHHI | GCGC | 2 cut(s) | 58, 106 |
| BstMAI | GTCTC | 6 cut(s) | 110, 579, 865, 1724, 2103, 2177 |
| BstMCI | CGRYCG | 2 cut(s) | 339, 1382 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 53, 143, 658, 1220, 1604, 1626, 1817, 1973, 2497 |
| BstNI | CCWGG | 3 cut(s) | 1150, 1293, 2386 |
| BstNSI | RCATGY | 4 cut(s) | 1398, 2842, 2948, 3329 |
| BstPI | GGTNACC | 1 cut(s) | 355 |
| BstSCI | CCNGG | 5 cut(s) | 246, 1148, 1291, 1645, 2384 |
| BstSFI | CTRYAG | 5 cut(s) | 1657, 2817, 2925, 3061, 3090 |
| BstSLI | GKGCMC | 3 cut(s) | 1291, 1653, 3288 |
| BstV1I | GCAGC | 5 cut(s) | 2147, 2198, 2624, 3167, 3316 |
| BstV2I | GAAGAC | 3 cut(s) | 1536, 2474, 2787 |
| BstX2I | RGATCY | 5 cut(s) | 320, 386, 500, 1018, 2974 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 199, 1149 |
| BstYI | RGATCY | 5 cut(s) | 320, 386, 500, 1018, 2974 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1305, 1477 |
| BsuI | GTATCC | 1 cut(s) | 2643 |
| BsuRI | GGCC | 9 cut(s) | 167, 890, 1217, 1434, 1671, 2273, 2775, 3100, 3179 |
| BtgI | CCRYGG | 3 cut(s) | 162, 483, 2671 |
| BtgZI | GCGATG | 1 cut(s) | 152 |
| BtsI | GCAGTG | 2 cut(s) | 2952, 2976 |
| BtsIMutI | CAGTG | 9 cut(s) | 315, 384, 417, 1006, 2064, 2934, 2952, 2976, 3105 |
| BveI | ACCTGC | 1 cut(s) | 3044 |
| Cac8I | GCNNGC | 5 cut(s) | 102, 144, 1365, 1404, 3177 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2497 |
| CciI | TCATGA | 2 cut(s) | 2133, 3183 |
| CfoI | GCGC | 2 cut(s) | 58, 106 |
| Cfr10I | RCCGGY | 1 cut(s) | 334 |
| Cfr13I | GGNCC | 5 cut(s) | 480, 686, 716, 1669, 3178 |
| CsiI | ACCWGGT | 1 cut(s) | 1291 |
| Csp6I | GTAC | 9 cut(s) | 1051, 1146, 1242, 1255, 1683, 1748, 1859, 2000, 3377 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 36 |
| CviQI | GTAC | 9 cut(s) | 1051, 1146, 1242, 1255, 1683, 1748, 1859, 2000, 3377 |
| DraI | TTTAAA | 1 cut(s) | 1953 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 77 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2704 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 77 |
| EaeI | YGGCCR | 2 cut(s) | 165, 2773 |
| Eam1104I | CTCTTC | 4 cut(s) | 1338, 1597, 1713, 2683 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2704 |
| EarI | CTCTTC | 4 cut(s) | 1338, 1597, 1713, 2683 |
| EciI | GGCGGA | 1 cut(s) | 1730 |
| Ecl136II | GAGCTC | 1 cut(s) | 265 |
| Eco130I | CCWWGG | 6 cut(s) | 162, 483, 1218, 1923, 2671, 2828 |
| Eco24I | GRGCYC | 2 cut(s) | 267, 2534 |
| Eco31I | GGTCTC | 1 cut(s) | 110 |
| Eco32I | GATATC | 1 cut(s) | 2453 |
| Eco47I | GGWCC | 3 cut(s) | 480, 686, 716 |
| Eco53kI | GAGCTC | 1 cut(s) | 265 |
| Eco57I | CTGAAG | 3 cut(s) | 2184, 2743, 3231 |
| Eco81I | CCTNAGG | 2 cut(s) | 1305, 1477 |
| Eco88I | CYCGRG | 2 cut(s) | 86, 712 |
| Eco91I | GGTNACC | 1 cut(s) | 355 |
| EcoICRI | GAGCTC | 1 cut(s) | 265 |
| EcoO109I | RGGNCCY | 3 cut(s) | 686, 716, 3178 |
| EcoO65I | GGTNACC | 1 cut(s) | 355 |
| EcoRI | GAATTC | 2 cut(s) | 1181, 2030 |
| EcoRII | CCWGG | 3 cut(s) | 1148, 1291, 2384 |
| EcoRV | GATATC | 1 cut(s) | 2453 |
| EcoT14I | CCWWGG | 6 cut(s) | 162, 483, 1218, 1923, 2671, 2828 |
| EcoT22I | ATGCAT | 1 cut(s) | 1092 |
| EcoT38I | GRGCYC | 2 cut(s) | 267, 2534 |
| ErhI | CCWWGG | 6 cut(s) | 162, 483, 1218, 1923, 2671, 2828 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3295, 3327 |
| FaqI | GGGAC | 4 cut(s) | 729, 2955, 3060, 3100 |
| FauI | CCCGC | 2 cut(s) | 622, 1170 |
| FbaI | TGATCA | 1 cut(s) | 735 |
| FblI | GTMKAC | 1 cut(s) | 3010 |
| Fnu4HI | GCNGC | 6 cut(s) | 1215, 2161, 2212, 2613, 3156, 3330 |
| FriOI | GRGCYC | 2 cut(s) | 267, 2534 |
| Fsp4HI | GCNGC | 6 cut(s) | 1215, 2161, 2212, 2613, 3156, 3330 |
| GlaI | GCGC | 2 cut(s) | 57, 105 |
| GluI | GCNGC | 6 cut(s) | 1215, 2161, 2212, 2613, 3156, 3330 |
| GsuI | CTGGAG | 3 cut(s) | 281, 360, 2364 |
| HaeII | RGCGCY | 1 cut(s) | 59 |
| HaeIII | GGCC | 9 cut(s) | 167, 890, 1217, 1434, 1671, 2273, 2775, 3100, 3179 |
| HapII | CCGG | 4 cut(s) | 248, 299, 335, 1646 |
| HhaI | GCGC | 2 cut(s) | 58, 106 |
| Hin6I | GCGC | 2 cut(s) | 56, 104 |
| HinP1I | GCGC | 2 cut(s) | 56, 104 |
| HincII | GTYRAC | 2 cut(s) | 177, 3011 |
| HindII | GTYRAC | 2 cut(s) | 177, 3011 |
| HindIII | AAGCTT | 1 cut(s) | 74 |
| HpaII | CCGG | 4 cut(s) | 248, 299, 335, 1646 |
| HphI | GGTGA | 8 cut(s) | 367, 499, 569, 845, 2301, 2329, 2535, 2708 |
| Hpy166II | GTNNAC | 8 cut(s) | 82, 177, 945, 1269, 1861, 2002, 2148, 3011 |
| Hpy8I | GTNNAC | 8 cut(s) | 82, 177, 945, 1269, 1861, 2002, 2148, 3011 |
| Hpy99I | CGWCG | 1 cut(s) | 53 |
| HpyAV | CCTTC | 9 cut(s) | 264, 774, 1244, 1278, 1333, 1828, 2545, 2767, 3275 |
| HpyCH4III | ACNGT | 7 cut(s) | 310, 421, 1246, 1266, 2152, 2620, 2929 |
| HpyCH4IV | ACGT | 1 cut(s) | 63 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 53, 143, 658, 1220, 1604, 1626, 1817, 1973, 2497 |
| HpySE526I | ACGT | 1 cut(s) | 63 |
| HspAI | GCGC | 2 cut(s) | 56, 104 |
| KpnI | GGTACC | 1 cut(s) | 1751 |
| Ksp22I | TGATCA | 1 cut(s) | 735 |
| LguI | GCTCTTC | 2 cut(s) | 1597, 2683 |
| LmnI | GCTCC | 7 cut(s) | 63, 238, 256, 262, 1973, 2084, 3263 |
| Lsp1109I | GCAGC | 5 cut(s) | 2147, 2198, 2624, 3167, 3316 |
| LweI | GCATC | 8 cut(s) | 87, 115, 124, 129, 627, 886, 1573, 3232 |
| MabI | ACCWGGT | 1 cut(s) | 1291 |
| MaeII | ACGT | 1 cut(s) | 63 |
| MaeIII | GTNAC | 4 cut(s) | 355, 394, 542, 3056 |
| MfeI | CAATTG | 3 cut(s) | 774, 1077, 2024 |
| MflI | RGATCY | 5 cut(s) | 320, 386, 500, 1018, 2974 |
| MhlI | GDGCHC | 6 cut(s) | 243, 267, 1291, 1653, 2534, 3288 |
| MlsI | TGGCCA | 2 cut(s) | 167, 2775 |
| MluNI | TGGCCA | 2 cut(s) | 167, 2775 |
| MlyI | GAGTC | 4 cut(s) | 675, 1730, 2740, 2801 |
| MmeI | TCCRAC | 4 cut(s) | 458, 698, 2044, 2390 |
| Mox20I | TGGCCA | 2 cut(s) | 167, 2775 |
| Mph1103I | ATGCAT | 1 cut(s) | 1092 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1692 |
| MscI | TGGCCA | 2 cut(s) | 167, 2775 |
| MslI | CAYNNNNRTG | 5 cut(s) | 197, 731, 2138, 2739, 3110 |
| Msp20I | TGGCCA | 2 cut(s) | 167, 2775 |
| MspCI | CTTAAG | 3 cut(s) | 2012, 2096, 2888 |
| MspI | CCGG | 4 cut(s) | 248, 299, 335, 1646 |
| MspR9I | CCNGG | 5 cut(s) | 248, 1150, 1293, 1647, 2386 |
| MunI | CAATTG | 3 cut(s) | 774, 1077, 2024 |
| MvaI | CCWGG | 3 cut(s) | 1150, 1293, 2386 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 53, 143, 658, 1220, 1604, 1626, 1817, 1973, 2497 |
| NciI | CCSGG | 2 cut(s) | 248, 1647 |
| NcoI | CCATGG | 3 cut(s) | 162, 483, 2671 |
| NlaIV | GGNNCC | 9 cut(s) | 252, 502, 717, 1290, 1670, 1749, 1921, 2976, 3287 |
| NmeAIII | GCCGAG | 1 cut(s) | 2547 |
| NmuCI | GTSAC | 2 cut(s) | 355, 542 |
| NsiI | ATGCAT | 1 cut(s) | 1092 |
| NspI | RCATGY | 4 cut(s) | 1398, 2842, 2948, 3329 |
| PaeR7I | CTCGAG | 1 cut(s) | 86 |
| PagI | TCATGA | 2 cut(s) | 2133, 3183 |
| PciI | ACATGT | 2 cut(s) | 2838, 2944 |
| PciSI | GCTCTTC | 2 cut(s) | 1597, 2683 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1692 |
| PfeI | GAWTC | 8 cut(s) | 1231, 1482, 1612, 1874, 2260, 2306, 2511, 3146 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 905, 2063 |
| PkrI | GCNGC | 6 cut(s) | 1216, 2162, 2213, 2614, 3157, 3331 |
| PleI | GAGTC | 4 cut(s) | 674, 1729, 2739, 2800 |
| PpsI | GAGTC | 4 cut(s) | 674, 1729, 2739, 2800 |
| PpuMI | RGGWCCY | 2 cut(s) | 686, 716 |
| PscI | ACATGT | 2 cut(s) | 2838, 2944 |
| PshBI | ATTAAT | 1 cut(s) | 1676 |
| Psp124BI | GAGCTC | 1 cut(s) | 267 |
| Psp5II | RGGWCCY | 2 cut(s) | 686, 716 |
| Psp6I | CCWGG | 3 cut(s) | 1148, 1291, 2384 |
| PspEI | GGTNACC | 1 cut(s) | 355 |
| PspGI | CCWGG | 3 cut(s) | 1148, 1291, 2384 |
| PspN4I | GGNNCC | 9 cut(s) | 252, 502, 717, 1290, 1670, 1749, 1921, 2976, 3287 |
| PspPI | GGNCC | 5 cut(s) | 480, 686, 716, 1669, 3178 |
| PspPPI | RGGWCCY | 2 cut(s) | 686, 716 |
| PspXI | VCTCGAGB | 1 cut(s) | 86 |
| PstI | CTGCAG | 1 cut(s) | 1661 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2497 |
| PsuI | RGATCY | 5 cut(s) | 320, 386, 500, 1018, 2974 |
| RsaI | GTAC | 9 cut(s) | 1052, 1147, 1243, 1256, 1684, 1749, 1860, 2001, 3378 |
| RsaNI | GTAC | 9 cut(s) | 1051, 1146, 1242, 1255, 1683, 1748, 1859, 2000, 3377 |
| RseI | CAYNNNNRTG | 5 cut(s) | 197, 731, 2138, 2739, 3110 |
| SacI | GAGCTC | 1 cut(s) | 267 |
| SalI | GTCGAC | 1 cut(s) | 3009 |
| SapI | GCTCTTC | 2 cut(s) | 1597, 2683 |
| SatI | GCNGC | 6 cut(s) | 1215, 2161, 2212, 2613, 3156, 3330 |
| Sau96I | GGNCC | 5 cut(s) | 480, 686, 716, 1669, 3178 |
| ScaI | AGTACT | 1 cut(s) | 1052 |
| SchI | GAGTC | 4 cut(s) | 675, 1730, 2740, 2801 |
| ScrFI | CCNGG | 5 cut(s) | 248, 1150, 1293, 1647, 2386 |
| SduI | GDGCHC | 6 cut(s) | 243, 267, 1291, 1653, 2534, 3288 |
| SexAI | ACCWGGT | 1 cut(s) | 1291 |
| SfaNI | GCATC | 8 cut(s) | 87, 115, 124, 129, 627, 886, 1573, 3232 |
| SfcI | CTRYAG | 5 cut(s) | 1657, 2817, 2925, 3061, 3090 |
| Sfr274I | CTCGAG | 1 cut(s) | 86 |
| SinI | GGWCC | 3 cut(s) | 480, 686, 716 |
| SlaI | CTCGAG | 1 cut(s) | 86 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 197, 731, 2138, 2739, 3110 |
| SmlI | CTYRAG | 7 cut(s) | 86, 2012, 2096, 2234, 2701, 2789, 2888 |
| SmoI | CTYRAG | 7 cut(s) | 86, 2012, 2096, 2234, 2701, 2789, 2888 |
| SpeI | ACTAGT | 1 cut(s) | 398 |
| SsiI | CCGC | 7 cut(s) | 360, 629, 1177, 1214, 1382, 1715, 2738 |
| SspI | AATATT | 1 cut(s) | 445 |
| SstI | GAGCTC | 1 cut(s) | 267 |
| StyD4I | CCNGG | 5 cut(s) | 246, 1148, 1291, 1645, 2384 |
| StyI | CCWWGG | 6 cut(s) | 162, 483, 1218, 1923, 2671, 2828 |
| TaaI | ACNGT | 7 cut(s) | 310, 421, 1246, 1266, 2152, 2620, 2929 |
| TaiI | ACGT | 1 cut(s) | 66 |
| TaqI | TCGA | 7 cut(s) | 51, 87, 132, 1378, 1438, 3010, 3234 |
| TatI | WGTACW | 3 cut(s) | 1050, 1858, 3376 |
| TauI | GCSGC | 1 cut(s) | 1217 |
| TfiI | GAWTC | 8 cut(s) | 1231, 1482, 1612, 1874, 2260, 2306, 2511, 3146 |
| TscAI | CASTG | 9 cut(s) | 315, 384, 424, 1006, 2064, 2934, 2959, 2976, 3112 |
| TseFI | GTSAC | 2 cut(s) | 355, 542 |
| TseI | GCWGC | 5 cut(s) | 2160, 2211, 2612, 3155, 3329 |
| Tsp45I | GTSAC | 2 cut(s) | 355, 542 |
| TspGWI | ACGGA | 1 cut(s) | 1700 |
| TspRI | CASTG | 9 cut(s) | 315, 384, 424, 1006, 2064, 2934, 2959, 2976, 3112 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 905, 2063 |
| Vha464I | CTTAAG | 3 cut(s) | 2012, 2096, 2888 |
| VpaK11BI | GGWCC | 3 cut(s) | 480, 686, 716 |
| VspI | ATTAAT | 1 cut(s) | 1676 |
| XapI | RAATTY | 8 cut(s) | 128, 964, 1058, 1136, 1181, 1839, 2030, 3079 |
| XceI | RCATGY | 4 cut(s) | 1398, 2842, 2948, 3329 |
| XhoI | CTCGAG | 1 cut(s) | 86 |
| XmiI | GTMKAC | 1 cut(s) | 3010 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1692 |
| ZrmI | AGTACT | 1 cut(s) | 1052 |
| Zsp2I | ATGCAT | 1 cut(s) | 1092 |